Wall clock time and date at job start Tue Mar 31 2020 05:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47321 * 240.00197 * 2 1 3 5 5 O 1.45197 * 109.47098 * 119.99904 * 2 1 3 6 6 C 1.34637 * 116.99840 * 60.00360 * 5 2 1 7 7 O 1.21511 * 120.00341 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99811 * 179.97438 * 6 5 2 9 9 C 1.47162 * 120.70845 * 180.02562 * 8 6 5 10 10 C 1.53890 * 108.03178 * 132.75984 * 9 8 6 11 11 H 1.08996 * 112.09316 * 181.90668 * 10 9 8 12 12 C 1.54547 * 107.82864 * 305.86638 * 10 9 8 13 13 C 1.55858 * 104.09159 * 89.27687 * 12 10 9 14 14 C 1.54548 * 105.00220 * 359.97438 * 13 12 10 15 15 H 1.09007 * 112.17980 * 146.41277 * 14 13 12 16 16 C 1.47164 * 120.70996 * 359.72412 * 8 6 5 17 17 N 1.48305 * 107.20887 * 58.35945 * 10 9 8 18 18 C 1.36935 * 128.07765 * 106.70217 * 17 10 9 19 19 H 1.08010 * 119.99903 * 15.01174 * 18 17 10 20 20 C 1.38815 * 120.00459 * 195.00556 * 18 17 10 21 21 N 1.31619 * 119.99361 * 9.30010 * 20 18 17 22 22 Si 1.86797 * 120.00399 * 189.29125 * 20 18 17 23 23 H 1.48500 * 109.46808 * 94.22177 * 22 20 18 24 24 H 1.48495 * 109.47273 * 214.22202 * 22 20 18 25 25 H 1.48503 * 109.46867 * 334.22629 * 22 20 18 26 26 H 1.08997 * 109.47606 * 299.99938 * 1 2 3 27 27 H 1.09003 * 109.47412 * 60.00029 * 1 2 3 28 28 H 1.09005 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46723 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47767 * 299.99631 * 3 2 1 31 31 H 1.09002 * 109.47293 * 60.00625 * 3 2 1 32 32 H 1.08996 * 109.47150 * 299.99840 * 4 2 1 33 33 H 1.09003 * 109.46763 * 60.00017 * 4 2 1 34 34 H 1.08999 * 109.47029 * 179.97438 * 4 2 1 35 35 H 1.09003 * 109.75027 * 252.38950 * 9 8 6 36 36 H 1.09001 * 109.75390 * 13.07338 * 9 8 6 37 37 H 1.08993 * 110.36782 * 207.91385 * 12 10 9 38 38 H 1.08998 * 110.36615 * 330.23582 * 12 10 9 39 39 H 1.08994 * 110.28578 * 241.09350 * 13 12 10 40 40 H 1.09004 * 110.39040 * 118.92507 * 13 12 10 41 41 H 1.08996 * 109.74909 * 346.87454 * 16 8 6 42 42 H 1.08997 * 109.75051 * 107.60704 * 16 8 6 43 43 H 0.97000 * 119.99778 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9517 -2.5097 0.5035 8 7 2.0681 -2.6657 2.4166 9 6 1.6825 -4.0741 2.5989 10 6 2.9461 -4.8695 2.9719 11 1 2.7407 -5.9333 3.0906 12 6 4.0131 -4.5986 1.8872 13 6 4.7713 -3.3399 2.4068 14 6 4.0852 -2.9836 3.7450 15 1 4.7859 -2.5667 4.4685 16 6 2.9228 -2.0324 3.4335 17 7 3.4967 -4.2637 4.2085 18 6 3.4681 -4.7683 5.4812 19 1 3.2273 -5.8084 5.6445 20 6 3.7486 -3.9430 6.5616 21 7 3.8615 -2.6436 6.3852 22 14 3.9657 -4.6766 8.2657 23 1 5.4077 -4.9282 8.5162 24 1 3.4448 -3.7284 9.2829 25 1 3.2175 -5.9564 8.3527 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 0.9473 -4.1541 3.3996 36 1 1.2614 -4.4637 1.6721 37 1 4.6923 -5.4468 1.8031 38 1 3.5362 -4.3967 0.9281 39 1 4.6697 -2.5181 1.6980 40 1 5.8240 -3.5711 2.5699 41 1 3.3124 -1.0889 3.0515 42 1 2.3451 -1.8529 4.3403 43 1 4.0579 -2.0669 7.1400 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852776993.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:14 Heat of formation + Delta-G solvation = -45.994244 kcal Electronic energy + Delta-G solvation = -24377.595953 eV Core-core repulsion = 21037.934283 eV Total energy + Delta-G solvation = -3339.661670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50579 -38.91135 -36.44472 -34.10850 -33.29906 -32.28894 -30.56525 -29.21247 -27.32052 -27.26581 -26.23209 -24.02660 -23.65601 -21.65872 -19.72351 -19.41888 -18.61997 -17.75157 -16.28402 -16.16865 -15.85166 -14.99729 -14.70026 -14.42869 -13.97529 -13.78787 -13.66002 -13.01414 -12.99517 -12.78317 -12.42429 -12.20576 -11.84683 -11.81473 -11.76315 -11.70216 -11.55499 -11.20814 -11.07308 -11.04497 -10.87506 -10.77561 -10.29118 -10.09663 -10.03610 -9.85162 -9.63673 -9.55570 -9.51695 -8.79442 -8.08696 -6.85414 -5.85281 -3.20163 2.68018 3.34904 3.38747 3.41882 3.43126 4.36820 4.43951 4.84723 4.88006 5.02354 5.20648 5.32778 5.51530 5.59109 5.59648 5.67519 5.74815 5.75510 5.81499 5.83912 5.95998 5.96658 6.04575 6.08315 6.14978 6.30270 6.38622 6.40421 6.46495 6.54614 6.64491 6.66660 6.76577 6.83975 6.91867 7.02032 7.29455 7.47409 7.66682 8.09528 8.13891 8.90090 9.04989 9.66972 10.43829 11.28072 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027528 B = 0.005167 C = 0.004882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.885253 B = 5417.202181 C = 5733.829277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.181 4.181 5 O -0.361 6.361 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.575 5.575 9 C 0.118 3.882 10 C 0.133 3.867 11 H 0.080 0.920 12 C -0.125 4.125 13 C -0.135 4.135 14 C 0.167 3.833 15 H 0.121 0.879 16 C 0.110 3.890 17 N -0.584 5.584 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.915 5.915 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.144 4.881 -11.545 12.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.238 4.238 5 O -0.276 6.276 6 C 0.401 3.599 7 O -0.484 6.484 8 N -0.314 5.314 9 C -0.006 4.006 10 C 0.024 3.976 11 H 0.098 0.902 12 C -0.164 4.164 13 C -0.175 4.175 14 C 0.059 3.941 15 H 0.138 0.862 16 C -0.013 4.013 17 N -0.305 5.305 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.561 5.561 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.329 4.830 -11.523 12.709 hybrid contribution 0.003 -0.184 0.867 0.886 sum -2.326 4.646 -10.656 11.855 Atomic orbital electron populations 1.22498 0.94455 1.05013 1.01906 1.21924 0.94099 0.91455 0.82760 1.21836 1.02206 0.92943 1.02702 1.22494 1.01415 1.03589 0.96318 1.86332 1.71576 1.24235 1.45480 1.18034 0.79125 0.80291 0.82438 1.90798 1.42995 1.70547 1.44083 1.47150 1.51369 1.11968 1.20897 1.22421 0.98568 0.78818 1.00756 1.21983 0.91293 0.96125 0.88166 0.90200 1.22746 0.98054 0.97890 0.97686 1.22913 0.98971 0.96769 0.98813 1.21806 0.92946 0.87202 0.92097 0.86195 1.22446 0.93391 0.95488 0.89978 1.45167 1.63557 1.19665 1.02145 1.19036 1.41955 0.93583 0.80700 0.90495 1.24822 1.02246 0.95239 0.97728 1.69831 1.54108 1.02018 1.30170 0.86098 0.77797 0.77970 0.83834 1.21632 1.21766 1.20618 0.92382 0.91715 0.89324 0.91556 0.90614 0.91567 0.89306 0.91737 0.92369 0.91757 0.90485 0.92629 0.92646 0.93140 0.92795 0.91533 0.90098 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.37 37.16 0.31 -2.11 16 2 C 0.13 1.88 1.13 -90.62 -0.10 1.78 16 3 C -0.14 -1.52 8.85 37.16 0.33 -1.19 16 4 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 5 O -0.36 -6.35 8.58 -40.31 -0.35 -6.70 16 6 C 0.65 12.50 7.74 54.05 0.42 12.92 16 7 O -0.59 -11.85 11.35 -19.28 -0.22 -12.07 16 8 N -0.58 -11.52 2.27 -177.62 -0.40 -11.92 16 9 C 0.12 2.31 5.89 -3.22 -0.02 2.29 16 10 C 0.13 2.66 4.27 -65.66 -0.28 2.38 16 11 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 12 C -0.12 -2.28 6.31 -24.39 -0.15 -2.43 16 13 C -0.14 -2.61 6.22 -24.39 -0.15 -2.76 16 14 C 0.17 3.72 3.11 -65.91 -0.21 3.52 16 15 H 0.12 3.01 6.36 -51.93 -0.33 2.68 16 16 C 0.11 2.34 5.78 -3.48 -0.02 2.32 16 17 N -0.58 -13.82 2.81 -152.87 -0.43 -14.25 16 18 C -0.22 -5.84 10.37 -15.06 -0.16 -5.99 16 19 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 20 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 21 N -0.91 -24.72 10.42 55.49 0.58 -24.15 16 22 Si 0.91 21.07 29.56 -169.99 -5.03 16.05 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 1.41 5.88 -51.93 -0.31 1.10 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.39 5.88 -51.93 -0.31 1.09 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.08 1.43 7.11 -51.93 -0.37 1.06 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.99 7.84 -51.93 -0.41 0.58 16 39 H 0.05 0.93 7.83 -51.93 -0.41 0.53 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 1.33 7.04 -51.93 -0.37 0.97 16 42 H 0.08 1.96 7.82 -51.93 -0.41 1.56 16 43 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 329.64 15.07 4.97 4.97 Total: -1.00 -27.97 329.64 -7.78 -35.75 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.09 Total: 3.86 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 0.19 Total: 8.45 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: -0.25 Total: -50.32 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.56 Total: -18.76 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.97 -7.78 -35.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852776993.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.244 kcal (2) G-P(sol) polarization free energy of solvation -27.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds