Wall clock time and date at job start Tue Mar 31 2020 06:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46971 * 2 1 4 4 N 1.46498 * 109.46939 * 120.00314 * 2 1 3 5 5 C 1.46506 * 119.99674 * 124.35376 * 4 2 1 6 6 C 1.50704 * 109.46751 * 269.72206 * 5 4 2 7 7 H 1.08000 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31521 * 120.00231 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00028 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46960 * 59.99447 * 10 8 6 12 12 H 1.48493 * 109.46954 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.46717 * 299.99767 * 10 8 6 14 14 C 1.34771 * 120.00116 * 304.07461 * 4 2 1 15 15 O 1.21280 * 120.00300 * 354.87041 * 14 4 2 16 16 C 1.50698 * 119.99998 * 174.87277 * 14 4 2 17 17 H 1.09000 * 109.30075 * 333.11134 * 16 14 4 18 18 C 1.52924 * 109.30346 * 92.69143 * 16 14 4 19 19 C 1.53271 * 108.71645 * 171.25936 * 18 16 14 20 20 C 1.53070 * 108.24682 * 292.18782 * 19 18 16 21 21 C 1.50173 * 109.89199 * 48.96288 * 20 19 18 22 22 O 1.21281 * 118.24526 * 162.39326 * 21 20 19 23 23 N 1.33348 * 123.51117 * 342.42002 * 21 20 19 24 24 C 1.46502 * 117.95052 * 182.24164 * 23 21 20 25 25 H 1.08994 * 109.46884 * 305.78307 * 1 2 3 26 26 H 1.08995 * 109.46772 * 65.78647 * 1 2 3 27 27 H 1.09000 * 109.46862 * 185.78613 * 1 2 3 28 28 H 1.09006 * 109.47051 * 240.00230 * 2 1 3 29 29 H 1.09000 * 109.47175 * 184.68621 * 3 2 1 30 30 H 1.08999 * 109.47697 * 304.68954 * 3 2 1 31 31 H 1.09002 * 109.46713 * 64.69478 * 3 2 1 32 32 H 1.08993 * 109.47000 * 29.72297 * 5 4 2 33 33 H 1.09000 * 109.47047 * 149.72243 * 5 4 2 34 34 H 0.96993 * 120.00113 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.60273 * 290.82571 * 18 16 14 36 36 H 1.09004 * 109.59900 * 51.30949 * 18 16 14 37 37 H 1.08996 * 109.71013 * 172.53984 * 19 18 16 38 38 H 1.08997 * 109.84504 * 51.91317 * 19 18 16 39 39 H 1.09002 * 109.39942 * 288.83244 * 20 19 18 40 40 H 1.08997 * 109.32930 * 169.04888 * 20 19 18 41 41 H 1.09004 * 109.47089 * 266.41751 * 24 23 21 42 42 H 1.08996 * 109.46786 * 26.41584 * 24 23 21 43 43 H 1.09000 * 109.47269 * 146.41265 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.9376 -1.8238 1.0637 6 6 2.1469 -3.1028 0.9628 7 1 1.0677 -3.0745 0.9946 8 6 2.8013 -4.3092 0.8310 9 7 4.1155 -4.3437 0.7928 10 14 1.8213 -5.8946 0.7066 11 1 0.9338 -5.8360 -0.4825 12 1 2.7530 -7.0431 0.5723 13 1 0.9981 -6.0649 1.9308 14 6 1.6264 -0.2802 2.4185 15 8 0.9452 0.7165 2.5340 16 6 2.0348 -1.0596 3.6419 17 1 2.1992 -2.1015 3.3671 18 6 3.3310 -0.4748 4.2045 19 6 3.6168 -1.1277 5.5615 20 6 2.5457 -0.6637 6.5517 21 6 1.1822 -0.8304 5.9448 22 8 0.2204 -0.8240 6.6836 23 7 0.9724 -0.9857 4.6371 24 6 -0.4129 -1.0879 4.1713 25 1 -0.3633 0.6009 0.8336 26 1 -0.3633 0.4215 -0.9372 27 1 -0.3633 -1.0224 0.1036 28 1 1.8934 -0.5138 -0.8901 29 1 3.1268 1.4437 -0.0840 30 1 1.6098 1.9801 -0.8450 31 1 1.7469 1.9314 0.9291 32 1 3.5418 -1.6983 0.1653 33 1 3.5889 -1.8672 1.9366 34 1 4.5758 -5.1924 0.7004 35 1 4.1537 -0.6844 3.5209 36 1 3.2219 0.6025 4.3299 37 1 4.6012 -0.8226 5.9161 38 1 3.5817 -2.2128 5.4647 39 1 2.7079 0.3864 6.7948 40 1 2.6125 -1.2604 7.4613 41 1 -0.6991 -2.1379 4.1104 42 1 -1.0704 -0.5720 4.8710 43 1 -0.4996 -0.6298 3.1860 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906481883.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:46 Heat of formation + Delta-G solvation = -75.153523 kcal Electronic energy + Delta-G solvation = -24320.505855 eV Core-core repulsion = 20979.579744 eV Total energy + Delta-G solvation = -3340.926111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.68375 -39.09499 -36.20802 -35.42615 -33.73662 -33.25925 -31.76060 -29.41364 -27.13272 -26.79580 -26.68238 -24.87446 -22.96003 -22.02857 -21.69219 -18.65757 -18.20322 -16.82644 -16.39264 -16.29474 -16.18609 -15.21771 -15.08536 -14.48858 -14.31314 -14.02117 -13.84008 -13.35523 -13.19895 -13.04905 -12.92993 -12.38135 -12.10869 -11.93836 -11.79860 -11.69130 -11.61767 -11.49059 -11.22429 -11.02124 -10.93095 -10.87197 -10.79731 -10.65202 -10.47026 -10.17886 -9.83455 -9.55229 -9.05741 -8.67109 -8.20625 -7.83283 -6.28844 -4.37210 2.88798 2.96811 3.18345 3.23843 3.27186 3.44514 3.80524 4.24854 4.74274 4.84637 4.92465 4.97123 5.04398 5.21756 5.48038 5.55271 5.60723 5.63513 5.74933 5.79520 5.88222 5.93029 5.98793 6.01088 6.05182 6.09028 6.11600 6.25946 6.27698 6.35038 6.36228 6.62964 6.67754 6.68631 6.72860 7.04299 7.44275 7.65607 7.76329 7.92251 8.19525 8.43386 8.67256 8.85094 9.31809 10.77344 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.007804 C = 0.006072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.966839 B = 3587.106569 C = 4609.987530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 C -0.166 4.166 4 N -0.586 5.586 5 C 0.233 3.767 6 C -0.542 4.542 7 H 0.061 0.939 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.894 3.106 11 H -0.275 1.275 12 H -0.285 1.285 13 H -0.275 1.275 14 C 0.513 3.487 15 O -0.557 6.557 16 C 0.119 3.881 17 H 0.121 0.879 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.133 4.133 21 C 0.518 3.482 22 O -0.567 6.567 23 N -0.578 5.578 24 C 0.073 3.927 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.075 0.925 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 6.387 3.024 7.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 C -0.224 4.224 4 N -0.316 5.316 5 C 0.113 3.887 6 C -0.580 4.580 7 H 0.079 0.921 8 C -0.135 4.135 9 N -0.526 5.526 10 Si 0.722 3.278 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.300 3.700 15 O -0.437 6.437 16 C 0.013 3.987 17 H 0.139 0.861 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.173 4.173 21 C 0.306 3.694 22 O -0.447 6.447 23 N -0.309 5.309 24 C -0.070 4.070 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.222 6.758 3.404 7.570 hybrid contribution -0.324 -1.159 -0.390 1.265 sum -0.547 5.599 3.014 6.382 Atomic orbital electron populations 1.22162 0.95597 1.02471 1.02058 1.20872 0.94205 0.92374 0.88145 1.22198 1.00534 0.96789 1.02865 1.48358 1.46490 1.32652 1.04111 1.19554 0.88200 0.82268 0.98639 1.21435 0.93644 0.90883 1.52087 0.92051 1.24923 0.94890 0.99183 0.94545 1.69896 1.06933 1.26921 1.48877 0.86605 0.79873 0.82396 0.78971 1.20078 1.21080 1.20000 1.20374 0.80184 0.84638 0.84830 1.90563 1.40148 1.26370 1.86648 1.21219 0.87564 1.02848 0.87094 0.86124 1.21801 0.96054 1.00632 0.97734 1.21643 0.98549 1.01722 0.93943 1.21651 0.91671 1.04086 0.99846 1.20068 0.91706 0.75966 0.81639 1.90666 1.43079 1.52325 1.58627 1.46881 1.07591 1.70520 1.05892 1.21837 0.82168 1.01370 1.01608 0.90903 0.92812 0.92458 0.89642 0.93155 0.92627 0.90805 0.94344 0.94296 0.92338 0.88872 0.90829 0.90257 0.90416 0.88529 0.88396 0.93018 0.90594 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.95 37.16 0.33 -2.37 16 2 C 0.15 2.53 3.27 -67.93 -0.22 2.31 16 3 C -0.17 -2.53 9.23 37.16 0.34 -2.19 16 4 N -0.59 -11.16 2.41 -167.46 -0.40 -11.56 16 5 C 0.23 5.01 4.71 -5.19 -0.02 4.99 16 6 C -0.54 -13.03 8.62 -34.44 -0.30 -13.32 16 7 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -22.96 13.29 55.43 0.74 -22.22 16 10 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 14 C 0.51 9.68 5.01 -10.99 -0.06 9.62 16 15 O -0.56 -11.14 11.26 5.56 0.06 -11.08 16 16 C 0.12 2.10 2.33 -69.52 -0.16 1.94 16 17 H 0.12 2.37 6.08 -51.93 -0.32 2.05 16 18 C -0.12 -1.79 5.16 -26.63 -0.14 -1.93 16 19 C -0.12 -1.48 6.04 -26.56 -0.16 -1.64 16 20 C -0.13 -1.73 6.02 -28.10 -0.17 -1.90 16 21 C 0.52 9.09 7.47 -11.88 -0.09 9.00 16 22 O -0.57 -11.63 16.16 5.56 0.09 -11.54 16 23 N -0.58 -10.40 2.95 -176.51 -0.52 -10.92 16 24 C 0.07 1.31 9.77 59.85 0.58 1.89 16 25 H 0.07 1.28 6.25 -51.93 -0.32 0.96 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.47 7.83 -51.93 -0.41 1.06 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.25 6.20 -51.93 -0.32 0.93 16 32 H 0.04 0.88 7.95 -51.93 -0.41 0.47 16 33 H 0.04 0.84 5.61 -51.93 -0.29 0.55 16 34 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 35 H 0.09 1.32 7.08 -51.93 -0.37 0.96 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.00 8.13 -51.93 -0.42 0.58 16 39 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.37 7.09 -51.93 -0.37 1.00 16 43 H 0.08 1.52 5.41 -51.93 -0.28 1.24 16 LS Contribution 335.92 15.07 5.06 5.06 Total: -1.00 -28.18 335.92 -7.01 -35.19 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.86 Total: 4.34 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.15 Total: 8.01 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.19 Total: -44.71 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.15 Total: -22.62 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.18 -7.01 -35.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481883.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.968 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds