Wall clock time and date at job start Tue Mar 31 2020 06:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 N 1.46499 * 109.47081 * 119.99542 * 2 1 3 5 5 C 1.46501 * 120.00211 * 118.44076 * 4 2 1 6 6 C 1.50695 * 109.47321 * 270.00352 * 5 4 2 7 7 H 1.08007 * 119.99981 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00106 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99857 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00230 * 179.97438 * 8 6 5 11 11 H 1.48494 * 109.47381 * 270.00213 * 10 8 6 12 12 H 1.48501 * 109.46960 * 30.00297 * 10 8 6 13 13 H 1.48501 * 109.47245 * 149.99751 * 10 8 6 14 14 C 1.34779 * 120.00074 * 298.44817 * 4 2 1 15 15 O 1.21285 * 120.00027 * 354.93200 * 14 4 2 16 16 C 1.50700 * 119.99956 * 174.93910 * 14 4 2 17 17 H 1.08995 * 109.30252 * 31.05517 * 16 14 4 18 18 C 1.52921 * 109.29956 * 271.47189 * 16 14 4 19 19 C 1.53343 * 108.67922 * 188.93294 * 18 16 14 20 20 C 1.53077 * 108.42256 * 67.53166 * 19 18 16 21 21 C 1.50174 * 109.89067 * 311.10535 * 20 19 18 22 22 O 1.21285 * 118.24326 * 197.60216 * 21 20 19 23 23 N 1.33352 * 123.50930 * 17.57925 * 21 20 19 24 24 C 1.46508 * 117.94688 * 177.78147 * 23 21 20 25 25 H 1.09006 * 109.47200 * 306.83051 * 1 2 3 26 26 H 1.09000 * 109.47140 * 66.82621 * 1 2 3 27 27 H 1.09006 * 109.47248 * 186.82668 * 1 2 3 28 28 H 1.08996 * 109.47139 * 239.99654 * 2 1 3 29 29 H 1.09003 * 109.47705 * 175.03614 * 3 2 1 30 30 H 1.09004 * 109.46943 * 295.03360 * 3 2 1 31 31 H 1.09001 * 109.47549 * 55.03173 * 3 2 1 32 32 H 1.08995 * 109.47330 * 149.99883 * 5 4 2 33 33 H 1.09001 * 109.46819 * 30.00102 * 5 4 2 34 34 H 0.96998 * 119.99789 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.60489 * 308.69567 * 18 16 14 36 36 H 1.09005 * 109.59927 * 69.01566 * 18 16 14 37 37 H 1.08997 * 109.67806 * 187.26359 * 19 18 16 38 38 H 1.09000 * 109.67347 * 307.76904 * 19 18 16 39 39 H 1.09006 * 109.39688 * 71.22883 * 20 19 18 40 40 H 1.09000 * 109.40279 * 190.97320 * 20 19 18 41 41 H 1.09006 * 109.46683 * 270.00166 * 24 23 21 42 42 H 1.08995 * 109.46990 * 29.99515 * 24 23 21 43 43 H 1.08994 * 109.47424 * 149.99673 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8322 -1.9013 1.0622 6 6 1.9334 -3.1106 1.0386 7 1 0.8629 -2.9895 1.1161 8 6 2.4776 -4.3717 0.9180 9 7 3.7811 -4.5192 0.8242 10 14 1.3636 -5.8709 0.8894 11 1 1.1591 -6.3623 2.2757 12 1 0.0529 -5.5024 0.2965 13 1 1.9930 -6.9399 0.0731 14 6 1.7187 -0.2120 2.4201 15 8 1.1239 0.8391 2.5313 16 6 2.1230 -0.9829 3.6502 17 1 3.0446 -1.5283 3.4470 18 6 1.0172 -1.9757 4.0107 19 6 1.3355 -2.5899 5.3792 20 6 1.2114 -1.4948 6.4416 21 6 1.9696 -0.2734 6.0073 22 8 2.2506 0.5562 6.8463 23 7 2.3508 -0.0524 4.7487 24 6 3.0422 1.2047 4.4514 25 1 -0.3634 0.6161 0.8226 26 1 -0.3633 0.4044 -0.9447 27 1 -0.3634 -1.0204 0.1222 28 1 1.8933 -0.5139 -0.8899 29 1 3.1264 1.4438 0.0889 30 1 1.7511 1.9299 -0.9312 31 1 1.6059 1.9814 0.8421 32 1 3.5171 -1.9740 1.9070 33 1 3.4029 -1.8546 0.1348 34 1 4.1639 -5.4065 0.7397 35 1 0.0600 -1.4562 4.0566 36 1 0.9710 -2.7613 3.2564 37 1 0.6295 -3.3918 5.5947 38 1 2.3510 -2.9858 5.3765 39 1 0.1604 -1.2393 6.5771 40 1 1.6192 -1.8577 7.3850 41 1 2.3106 1.9670 4.1833 42 1 3.5998 1.5292 5.3299 43 1 3.7303 1.0530 3.6199 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906481884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:49 Heat of formation + Delta-G solvation = -74.966278 kcal Electronic energy + Delta-G solvation = -24363.843436 eV Core-core repulsion = 21022.925445 eV Total energy + Delta-G solvation = -3340.917991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63154 -39.06777 -36.16446 -35.39579 -33.69159 -33.27095 -31.74651 -29.33464 -27.18509 -26.78572 -26.64927 -24.79399 -23.06152 -21.92543 -21.66414 -18.63983 -18.18722 -16.76490 -16.39805 -16.29721 -16.14837 -15.20240 -15.08194 -14.56025 -14.27480 -13.93682 -13.72537 -13.23892 -13.17347 -12.99952 -12.79883 -12.39258 -12.19704 -12.01565 -11.81355 -11.68392 -11.60320 -11.49561 -11.16094 -11.01475 -10.96924 -10.77618 -10.72777 -10.59757 -10.43628 -10.14829 -9.80693 -9.58115 -9.03356 -8.70287 -8.16860 -7.82732 -6.30094 -4.38008 2.89853 3.04948 3.13496 3.22776 3.24194 3.37477 3.84882 4.22026 4.79678 4.92310 5.02045 5.04700 5.10002 5.26476 5.52105 5.57771 5.60826 5.64098 5.73960 5.77480 5.90339 5.93937 6.01331 6.02619 6.11906 6.13161 6.23652 6.28553 6.38256 6.42791 6.56052 6.61308 6.69153 6.70596 6.73776 7.05975 7.44616 7.63962 7.74499 7.91546 8.21086 8.42676 8.66813 8.87920 9.29894 10.76252 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.007982 C = 0.005738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.605215 B = 3506.923064 C = 4878.864509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 C -0.167 4.167 4 N -0.586 5.586 5 C 0.233 3.767 6 C -0.539 4.539 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.273 1.273 13 H -0.285 1.285 14 C 0.512 3.488 15 O -0.556 6.556 16 C 0.129 3.871 17 H 0.106 0.894 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.134 4.134 21 C 0.519 3.481 22 O -0.568 6.568 23 N -0.583 5.583 24 C 0.082 3.918 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.067 0.933 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.980 3.783 2.531 5.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 C -0.225 4.225 4 N -0.317 5.317 5 C 0.113 3.887 6 C -0.577 4.577 7 H 0.083 0.917 8 C -0.136 4.136 9 N -0.525 5.525 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.197 1.197 13 H -0.211 1.211 14 C 0.298 3.702 15 O -0.436 6.436 16 C 0.022 3.978 17 H 0.123 0.877 18 C -0.166 4.166 19 C -0.158 4.158 20 C -0.173 4.173 21 C 0.308 3.692 22 O -0.448 6.448 23 N -0.315 5.315 24 C -0.060 4.060 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.136 0.864 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.977 4.586 2.954 6.214 hybrid contribution -0.444 -1.144 -0.355 1.278 sum -3.421 3.441 2.600 5.505 Atomic orbital electron populations 1.22124 0.95663 1.02491 1.01664 1.20855 0.94138 0.92441 0.88052 1.22245 1.00847 0.96916 1.02487 1.48354 1.51251 1.28084 1.04037 1.19562 0.90327 0.80284 0.98503 1.21445 0.93753 0.90528 1.51982 0.91745 1.24933 0.95016 0.99014 0.94616 1.69911 1.10184 1.23737 1.48651 0.86585 0.80787 0.82354 0.78368 1.20272 1.19738 1.21074 1.20387 0.79629 0.85324 0.84859 1.90559 1.42930 1.23380 1.86778 1.21116 1.01819 0.89869 0.84985 0.87677 1.21936 0.96551 0.99101 0.98988 1.21642 1.03312 0.97283 0.93529 1.21673 1.01536 0.93575 1.00549 1.20095 0.79282 0.88296 0.81523 1.90662 1.56777 1.47176 1.50229 1.47022 1.56788 1.20216 1.07466 1.21676 0.97073 0.86251 1.01037 0.91533 0.92867 0.92219 0.89769 0.93231 0.92845 0.90310 0.94436 0.94434 0.92384 0.91464 0.86364 0.90355 0.90685 0.88582 0.88524 0.91525 0.90853 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.05 37.16 0.34 -2.30 16 2 C 0.15 2.55 3.28 -67.93 -0.22 2.33 16 3 C -0.17 -2.59 8.99 37.16 0.33 -2.25 16 4 N -0.59 -11.12 2.41 -167.48 -0.40 -11.52 16 5 C 0.23 4.97 4.89 -5.20 -0.03 4.94 16 6 C -0.54 -12.35 7.64 -34.44 -0.26 -12.61 16 7 H 0.06 1.49 7.45 -52.48 -0.39 1.10 16 8 C 0.07 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -22.59 13.29 55.43 0.74 -21.85 16 10 Si 0.89 18.87 29.54 -169.99 -5.02 13.85 16 11 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 12 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.51 9.64 5.32 -10.98 -0.06 9.58 16 15 O -0.56 -11.18 11.34 5.55 0.06 -11.12 16 16 C 0.13 2.26 2.55 -69.53 -0.18 2.08 16 17 H 0.11 1.94 5.83 -51.93 -0.30 1.63 16 18 C -0.13 -2.06 5.29 -26.59 -0.14 -2.20 16 19 C -0.12 -1.62 6.03 -26.51 -0.16 -1.78 16 20 C -0.13 -1.82 6.03 -28.10 -0.17 -1.99 16 21 C 0.52 9.06 7.47 -11.87 -0.09 8.97 16 22 O -0.57 -11.48 16.18 5.55 0.09 -11.39 16 23 N -0.58 -10.19 2.95 -176.51 -0.52 -10.71 16 24 C 0.08 1.38 8.83 59.85 0.53 1.91 16 25 H 0.07 1.17 6.65 -51.93 -0.35 0.82 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.08 1.43 7.78 -51.93 -0.40 1.03 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 1.35 6.08 -51.93 -0.32 1.04 16 32 H 0.04 0.83 5.89 -51.93 -0.31 0.53 16 33 H 0.04 0.86 7.91 -51.93 -0.41 0.45 16 34 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 35 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 36 H 0.12 2.10 5.84 -51.93 -0.30 1.80 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 42 H 0.07 1.20 7.13 -51.93 -0.37 0.83 16 43 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -27.28 334.88 -7.07 -34.35 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.86 Total: 5.14 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: -0.20 Total: 8.21 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.19 Total: -44.08 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.15 Total: -22.51 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.28 -7.07 -34.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906481884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.615 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds