Wall clock time and date at job start Tue Mar 31 2020 05:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47190 * 2 1 4 4 C 1.53000 * 109.46870 * 239.99973 * 2 1 3 5 5 O 1.45199 * 109.46930 * 120.00260 * 2 1 3 6 6 C 1.34633 * 117.00218 * 59.99729 * 5 2 1 7 7 O 1.21513 * 120.00004 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00380 * 179.97438 * 6 5 2 9 9 C 1.47579 * 134.49764 * 180.02562 * 8 6 5 10 10 C 1.53948 * 86.11722 * 155.36460 * 9 8 6 11 11 N 1.46494 * 113.74227 * 137.95482 * 10 9 8 12 12 C 1.36940 * 119.99893 * 299.99792 * 11 10 9 13 13 H 1.07996 * 120.00423 * 306.42054 * 12 11 10 14 14 C 1.38813 * 119.99800 * 126.42429 * 12 11 10 15 15 N 1.31625 * 119.99943 * 164.55446 * 14 12 11 16 16 Si 1.86801 * 120.00327 * 344.54586 * 14 12 11 17 17 H 1.48499 * 109.46788 * 93.23262 * 16 14 12 18 18 H 1.48490 * 109.47490 * 213.23553 * 16 14 12 19 19 H 1.48505 * 109.47108 * 333.23910 * 16 14 12 20 20 C 1.46503 * 120.00176 * 119.99812 * 11 10 9 21 21 C 1.52998 * 117.49993 * 182.77830 * 20 11 10 22 22 C 1.52996 * 60.00048 * 252.51020 * 21 20 11 23 23 C 1.47588 * 134.48741 * 0.02562 * 8 6 5 24 24 H 1.08998 * 109.47172 * 300.00022 * 1 2 3 25 25 H 1.09000 * 109.47271 * 60.00100 * 1 2 3 26 26 H 1.09004 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47067 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46932 * 300.00107 * 3 2 1 29 29 H 1.08998 * 109.47081 * 59.99923 * 3 2 1 30 30 H 1.09004 * 109.47688 * 300.00342 * 4 2 1 31 31 H 1.09000 * 109.47234 * 59.99903 * 4 2 1 32 32 H 1.09001 * 109.47006 * 180.02562 * 4 2 1 33 33 H 1.09002 * 113.76983 * 41.06440 * 9 8 6 34 34 H 1.08997 * 113.77020 * 269.66746 * 9 8 6 35 35 H 1.09001 * 113.74191 * 269.25963 * 10 9 8 36 36 H 0.96999 * 120.00065 * 179.97438 * 15 14 12 37 37 H 1.08997 * 115.54746 * 328.48342 * 20 11 10 38 38 H 1.09002 * 117.49928 * 0.02562 * 21 20 11 39 39 H 1.09000 * 117.50015 * 145.02087 * 21 20 11 40 40 H 1.08996 * 117.50065 * 252.51071 * 22 21 20 41 41 H 1.09003 * 117.51420 * 107.48102 * 22 21 20 42 42 H 1.08998 * 113.77075 * 90.33332 * 23 8 6 43 43 H 1.09002 * 113.76956 * 318.93456 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0679 -2.6658 2.4166 9 6 1.8732 -4.0481 2.8955 10 6 3.1945 -3.8572 3.6622 11 7 3.1710 -4.4008 5.0224 12 6 2.2634 -3.9287 5.9327 13 1 2.1958 -2.8687 6.1280 14 6 1.4303 -4.8128 6.6045 15 7 0.7821 -4.4180 7.6799 16 14 1.2290 -6.5626 5.9824 17 1 2.2001 -7.4484 6.6735 18 1 -0.1525 -7.0308 6.2599 19 1 1.4798 -6.5997 4.5192 20 6 4.1184 -5.4493 5.4087 21 6 4.0010 -6.0214 6.8228 22 6 5.1679 -5.0987 6.4654 23 6 2.9009 -2.3477 3.5927 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7490 -1.2494 31 1 1.6766 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.9275 -4.7982 2.1065 34 1 1.0041 -4.1708 3.5417 35 1 4.0769 -4.1591 3.0979 36 1 0.1997 -5.0356 8.1492 37 1 4.4146 -6.1319 4.6123 38 1 3.2185 -5.6180 7.4656 39 1 4.2198 -7.0808 6.9570 40 1 6.1544 -5.5510 6.3644 41 1 5.1536 -4.0878 6.8729 42 1 2.3337 -1.9708 4.4438 43 1 3.7756 -1.7403 3.3603 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930870775.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:31 Heat of formation + Delta-G solvation = 14.273345 kcal Electronic energy + Delta-G solvation = -23328.919376 eV Core-core repulsion = 19991.871105 eV Total energy + Delta-G solvation = -3337.048271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45763 -38.93406 -36.98591 -36.03931 -33.87579 -32.64898 -31.35235 -27.95969 -27.40718 -27.34710 -25.65944 -24.69589 -22.07007 -21.66445 -20.50803 -19.66574 -18.84230 -17.35336 -16.74661 -16.41982 -16.28548 -15.46206 -14.94219 -14.67402 -14.22787 -14.00158 -13.91062 -13.36599 -13.18398 -12.61996 -12.51721 -12.26771 -12.05739 -11.98001 -11.85984 -11.80933 -11.64535 -11.49095 -11.28329 -11.12013 -10.79349 -10.71485 -10.50157 -10.40265 -10.21250 -9.80441 -9.69942 -9.54509 -9.18461 -8.53223 -8.21676 -6.66029 -6.13921 -3.83437 2.37104 3.23797 3.31969 3.43406 3.48424 4.11260 4.41803 4.74212 4.75090 4.76861 4.79318 4.92795 5.08424 5.40403 5.43190 5.47040 5.51988 5.64521 5.66494 5.74352 5.77524 5.79669 5.87508 5.93734 5.96939 5.98407 6.07289 6.13469 6.18579 6.31630 6.38335 6.41596 6.43842 6.49880 6.75266 6.80439 6.96772 7.23158 7.95168 8.17995 8.34846 8.70856 8.84690 9.49381 9.95399 10.95136 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026833 B = 0.004448 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.241800 B = 6293.093113 C = 6560.164424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.182 4.182 5 O -0.363 6.363 6 C 0.670 3.330 7 O -0.583 6.583 8 N -0.626 5.626 9 C 0.111 3.889 10 C 0.149 3.851 11 N -0.557 5.557 12 C -0.292 4.292 13 H 0.077 0.923 14 C 0.060 3.940 15 N -0.891 5.891 16 Si 0.880 3.120 17 H -0.268 1.268 18 H -0.304 1.304 19 H -0.266 1.266 20 C 0.107 3.893 21 C -0.198 4.198 22 C -0.209 4.209 23 C 0.097 3.903 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.267 0.733 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 5.543 -11.825 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.196 4.196 4 C -0.239 4.239 5 O -0.278 6.278 6 C 0.426 3.574 7 O -0.474 6.474 8 N -0.367 5.367 9 C -0.012 4.012 10 C 0.040 3.960 11 N -0.275 5.275 12 C -0.420 4.420 13 H 0.095 0.905 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.707 3.293 17 H -0.194 1.194 18 H -0.232 1.232 19 H -0.191 1.191 20 C -0.001 4.001 21 C -0.236 4.236 22 C -0.250 4.250 23 C -0.027 4.027 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.139 0.861 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.446 5.525 -12.145 14.064 hybrid contribution -0.404 -0.887 -0.194 0.994 sum 4.042 4.638 -12.338 13.787 Atomic orbital electron populations 1.22508 0.94261 1.05110 1.02124 1.21975 0.94274 0.91442 0.82551 1.21837 1.02115 0.92826 1.02863 1.22508 1.01378 1.03617 0.96399 1.86322 1.71811 1.23917 1.45752 1.17509 0.78153 0.79870 0.81835 1.90839 1.42095 1.70558 1.43901 1.48667 1.53120 1.14930 1.20020 1.24081 1.02305 0.79326 0.95455 1.22331 0.94813 0.92324 0.86493 1.43517 1.35216 1.42462 1.06286 1.18505 1.12480 0.93819 1.17224 0.90523 1.25832 0.94319 0.98677 0.95530 1.69850 1.29712 1.36541 1.16820 0.86922 0.76191 0.85593 0.80543 1.19354 1.23196 1.19057 1.21319 0.94380 0.94031 0.90344 1.23562 1.02319 0.97148 1.00573 1.23355 0.92973 1.00654 1.07981 1.23824 0.93302 0.99318 0.86251 0.92215 0.91515 0.89337 0.91603 0.90455 0.91501 0.89338 0.91527 0.92354 0.91397 0.88560 0.89062 0.92321 0.89195 0.86091 0.90602 0.90945 0.89057 0.88013 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 8.37 37.16 0.31 -2.09 16 2 C 0.13 1.80 1.13 -90.62 -0.10 1.70 16 3 C -0.14 -1.40 8.85 37.16 0.33 -1.07 16 4 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 5 O -0.36 -6.10 9.87 -40.31 -0.40 -6.50 16 6 C 0.67 12.68 8.22 54.05 0.44 13.12 16 7 O -0.58 -11.83 12.61 -19.28 -0.24 -12.07 16 8 N -0.63 -11.72 3.61 -184.36 -0.66 -12.39 16 9 C 0.11 2.13 8.44 -2.97 -0.03 2.10 16 10 C 0.15 2.72 4.62 -70.15 -0.32 2.40 16 11 N -0.56 -11.69 2.34 -159.93 -0.37 -12.07 16 12 C -0.29 -7.21 7.78 -15.06 -0.12 -7.33 16 13 H 0.08 2.08 6.82 -52.49 -0.36 1.73 16 14 C 0.06 1.57 3.72 -17.43 -0.06 1.50 16 15 N -0.89 -25.08 13.97 55.49 0.78 -24.31 16 16 Si 0.88 20.62 24.66 -169.99 -4.19 16.43 16 17 H -0.27 -6.00 5.63 56.52 0.32 -5.68 16 18 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.11 2.07 5.13 -67.93 -0.35 1.72 16 21 C -0.20 -4.03 6.55 -26.73 -0.18 -4.20 16 22 C -0.21 -3.81 10.36 -26.73 -0.28 -4.09 16 23 C 0.10 1.72 8.32 -2.97 -0.02 1.69 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 1.41 5.88 -51.93 -0.31 1.10 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.34 5.88 -51.93 -0.31 1.04 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.10 2.06 7.68 -51.93 -0.40 1.67 16 35 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 36 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 38 H 0.12 2.88 4.94 -51.93 -0.26 2.63 16 39 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 42 H 0.10 2.01 6.28 -51.93 -0.33 1.68 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -28.41 336.10 -7.16 -35.57 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.06 Total: 6.79 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -0.06 Total: 3.48 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: -0.26 Total: -48.77 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.64 Total: -18.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.19 Total: 16.43 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.41 -7.16 -35.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930870775.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.844 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds