Wall clock time and date at job start Tue Mar 31 2020 05:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34794 * 116.99917 * 2 1 4 4 O 1.21536 * 120.00107 * 359.97438 * 3 2 1 5 5 C 1.46948 * 120.00334 * 180.02562 * 3 2 1 6 6 C 1.33085 * 120.00347 * 188.95062 * 5 3 2 7 7 C 1.50704 * 119.99707 * 188.79401 * 6 5 3 8 8 C 1.50695 * 120.00052 * 8.79411 * 6 5 3 9 9 N 1.46897 * 109.47210 * 265.64974 * 8 6 5 10 10 C 1.46948 * 111.00159 * 163.36607 * 9 8 6 11 11 C 1.53050 * 109.36828 * 183.18655 * 10 9 8 12 12 N 1.46965 * 109.36246 * 301.59673 * 11 10 9 13 13 C 1.46894 * 110.99846 * 183.18125 * 12 11 10 14 14 C 1.50708 * 109.46735 * 169.99911 * 13 12 11 15 15 H 1.07996 * 119.99827 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99877 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00090 * 180.02562 * 16 14 13 18 18 Si 1.86810 * 120.00135 * 359.72517 * 16 14 13 19 19 H 1.48504 * 109.46796 * 270.27733 * 18 16 14 20 20 H 1.48503 * 109.46879 * 30.27450 * 18 16 14 21 21 H 1.48496 * 109.47146 * 150.27717 * 18 16 14 22 22 C 1.46957 * 110.87671 * 59.32002 * 12 11 10 23 23 C 1.46964 * 110.99413 * 287.16071 * 9 8 6 24 24 H 1.09000 * 109.47639 * 300.00039 * 1 2 3 25 25 H 1.09004 * 109.47191 * 60.00077 * 1 2 3 26 26 H 1.09004 * 109.47233 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99740 * 8.94265 * 5 3 2 28 28 H 1.09007 * 109.46995 * 275.62391 * 7 6 5 29 29 H 1.08991 * 109.47378 * 35.62829 * 7 6 5 30 30 H 1.09001 * 109.46287 * 155.62824 * 7 6 5 31 31 H 1.08995 * 109.47273 * 145.64342 * 8 6 5 32 32 H 1.09003 * 109.47012 * 25.64946 * 8 6 5 33 33 H 1.09000 * 109.49330 * 63.21633 * 10 9 8 34 34 H 1.09003 * 109.49165 * 303.15118 * 10 9 8 35 35 H 1.08998 * 109.49661 * 181.62910 * 11 10 9 36 36 H 1.09004 * 109.48852 * 61.55850 * 11 10 9 37 37 H 1.09002 * 109.46925 * 50.00664 * 13 12 11 38 38 H 1.08995 * 109.47949 * 290.00296 * 13 12 11 39 39 H 0.96999 * 119.99591 * 179.71720 * 17 16 14 40 40 H 1.09000 * 109.49485 * 60.64769 * 22 12 11 41 41 H 1.09003 * 109.48551 * 180.71473 * 22 12 11 42 42 H 1.08992 * 109.49168 * 296.77744 * 23 9 8 43 43 H 1.08996 * 109.48867 * 56.84792 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2203 -0.0005 5 6 3.5314 1.2780 -0.0006 6 6 4.1364 2.4498 0.1787 7 6 5.6260 2.5665 -0.0178 8 6 3.3319 3.6598 0.5783 9 7 2.9583 4.4180 -0.6232 10 6 1.8678 5.3594 -0.3339 11 6 1.4553 6.0706 -1.6249 12 7 2.6176 6.7723 -2.1873 13 6 2.2441 7.5304 -3.3888 14 6 3.3874 8.4248 -3.7940 15 1 4.3002 8.4292 -3.2169 16 6 3.2679 9.2374 -4.9015 17 7 4.2657 10.0176 -5.2554 18 14 1.6917 9.2241 -5.9041 19 1 1.7922 8.1955 -6.9705 20 1 0.5436 8.9071 -5.0172 21 1 1.4866 10.5589 -6.5216 22 6 3.7082 5.8308 -2.4767 23 6 4.1207 5.1197 -1.1856 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 4.1190 0.3837 -0.1464 28 1 6.1376 2.2695 0.8978 29 1 5.9367 1.9159 -0.8351 30 1 5.8809 3.5988 -0.2579 31 1 3.9286 4.2919 1.2359 32 1 2.4305 3.3403 1.1012 33 1 2.2068 6.0960 0.3946 34 1 1.0143 4.8145 0.0696 35 1 0.6662 6.7904 -1.4075 36 1 1.0907 5.3367 -2.3437 37 1 1.3649 8.1385 -3.1760 38 1 2.0192 6.8381 -4.2001 39 1 4.1831 10.5862 -6.0369 40 1 3.3692 5.0942 -3.2052 41 1 4.5617 6.3758 -2.8802 42 1 4.4853 5.8535 -0.4668 43 1 4.9098 4.3999 -1.4030 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931551585.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:36 Heat of formation + Delta-G solvation = -42.194109 kcal Electronic energy + Delta-G solvation = -22926.343550 eV Core-core repulsion = 19586.846667 eV Total energy + Delta-G solvation = -3339.496883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.47040 -38.88018 -36.98620 -35.67994 -34.00730 -32.28060 -30.45378 -29.15436 -28.87143 -27.27904 -26.27571 -23.70294 -22.98503 -21.93589 -20.98122 -19.14679 -18.85444 -17.68141 -16.77198 -16.41837 -16.27652 -15.78586 -15.05248 -14.43453 -14.40768 -14.26373 -13.85492 -13.74143 -13.53316 -13.19062 -13.11609 -13.06479 -12.68952 -12.32863 -12.17817 -11.92664 -11.71571 -11.55904 -11.32113 -10.93013 -10.80075 -10.70699 -10.61834 -10.40977 -9.96210 -9.89703 -9.76064 -9.32605 -9.21285 -8.54992 -8.01734 -7.30506 -6.02965 -3.99815 1.02152 2.72188 2.91039 3.30929 3.38161 3.41418 4.23825 4.44866 4.60375 4.65175 4.85739 4.96080 5.01426 5.04802 5.18779 5.30051 5.31072 5.31862 5.37356 5.48547 5.59077 5.62543 5.68297 5.85687 5.90368 5.93650 6.06445 6.09630 6.24262 6.26511 6.43626 6.49878 6.57786 6.69087 6.90225 7.01569 7.31085 7.39737 7.64945 7.81832 7.97345 8.11779 8.69710 9.04997 9.59417 11.10165 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023738 B = 0.003910 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.247658 B = 7158.702750 C = 7813.210959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.488 3.512 4 O -0.484 6.484 5 C -0.202 4.202 6 C -0.002 4.002 7 C -0.135 4.135 8 C 0.069 3.931 9 N -0.517 5.517 10 C 0.069 3.931 11 C 0.055 3.945 12 N -0.529 5.529 13 C 0.162 3.838 14 C -0.507 4.507 15 H 0.080 0.920 16 C 0.068 3.932 17 N -0.902 5.902 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.267 1.267 21 H -0.286 1.286 22 C 0.068 3.932 23 C 0.047 3.953 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.136 0.864 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.038 0.962 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.028 0.972 38 H -0.016 1.016 39 H 0.263 0.737 40 H 0.028 0.972 41 H 0.090 0.910 42 H 0.039 0.961 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.554 -20.104 13.008 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C 0.334 3.666 4 O -0.372 6.372 5 C -0.222 4.222 6 C -0.004 4.004 7 C -0.191 4.191 8 C -0.058 4.058 9 N -0.241 5.241 10 C -0.059 4.059 11 C -0.074 4.074 12 N -0.254 5.254 13 C 0.036 3.964 14 C -0.546 4.546 15 H 0.098 0.902 16 C -0.133 4.133 17 N -0.541 5.541 18 Si 0.703 3.297 19 H -0.204 1.204 20 H -0.192 1.192 21 H -0.212 1.212 22 C -0.060 4.060 23 C -0.080 4.080 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.154 0.846 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.120 0.880 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.001 0.999 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.749 -19.643 12.864 23.641 hybrid contribution -1.012 0.048 -0.717 1.241 sum -3.761 -19.595 12.147 23.359 Atomic orbital electron populations 1.23182 0.76612 1.03231 1.02515 1.86578 1.23138 1.33571 1.84940 1.21530 0.90114 0.81215 0.73770 1.90874 1.67012 1.35025 1.44277 1.21580 0.89959 0.99143 1.11502 1.22598 0.96217 0.93891 0.87670 1.21206 0.90762 1.04354 1.02783 1.21492 0.99272 0.92486 0.92564 1.62063 1.08372 1.26593 1.27085 1.22079 0.93895 0.92931 0.96951 1.22106 0.93988 0.95922 0.95339 1.62132 1.06777 1.24338 1.32116 1.20160 0.97600 0.92718 0.85950 1.21039 1.00944 1.21391 1.11187 0.90203 1.24896 0.96187 0.95130 0.97130 1.69896 1.31332 1.26303 1.26551 0.86853 0.84680 0.77411 0.80752 1.20358 1.19213 1.21188 1.22010 0.96481 0.93310 0.94246 1.22508 0.92353 0.95926 0.97243 0.92140 0.91890 0.88513 0.84627 0.90180 0.90363 0.89885 0.94382 0.87962 0.94688 0.90569 0.91155 0.95167 0.95433 0.99861 0.92713 0.95425 0.89133 0.94274 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.36 -4.10 10.58 -40.75 -0.43 -4.53 16 3 C 0.49 6.14 7.69 34.26 0.26 6.40 16 4 O -0.48 -7.20 12.20 -19.29 -0.24 -7.43 16 5 C -0.20 -2.13 9.77 -37.85 -0.37 -2.50 16 6 C 0.00 -0.02 5.32 -101.14 -0.54 -0.56 16 7 C -0.13 -1.10 9.42 36.01 0.34 -0.76 16 8 C 0.07 0.88 4.13 -4.98 -0.02 0.86 16 9 N -0.52 -8.07 4.09 -235.92 -0.96 -9.03 16 10 C 0.07 1.13 5.49 -3.77 -0.02 1.11 16 11 C 0.06 1.05 5.61 -3.76 -0.02 1.03 16 12 N -0.53 -11.65 4.70 -235.90 -1.11 -12.76 16 13 C 0.16 4.09 3.79 -4.98 -0.02 4.07 16 14 C -0.51 -14.65 9.03 -34.44 -0.31 -14.96 16 15 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 18 Si 0.88 21.96 27.46 -169.99 -4.67 17.29 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.50 6.55 56.52 0.37 -6.13 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16 23 C 0.05 0.77 5.06 -3.76 -0.02 0.75 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.08 0.74 5.81 -51.93 -0.30 0.44 16 31 H 0.04 0.46 8.04 -51.93 -0.42 0.04 16 32 H 0.10 1.39 5.37 -51.93 -0.28 1.11 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.19 7.62 -51.93 -0.40 0.79 16 35 H 0.07 1.27 8.07 -51.93 -0.42 0.86 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.70 7.10 -51.93 -0.37 0.34 16 38 H -0.02 -0.42 7.54 -51.93 -0.39 -0.81 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.98 6.79 -51.93 -0.35 1.63 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.04 5.18 -51.93 -0.27 0.77 16 LS Contribution 338.99 15.07 5.11 5.11 Total: -1.00 -32.86 338.99 -8.26 -41.13 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -6.97 Total: -2.77 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 0.23 Total: 0.07 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -1.30 Total: -48.87 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.67 Total: -11.96 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.86 -8.26 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931551585.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.065 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds