Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34803 * 116.99848 * 2 1 4 4 O 1.21533 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.46944 * 120.00071 * 179.97438 * 3 2 1 6 6 C 1.33081 * 120.00118 * 186.01286 * 5 3 2 7 7 C 1.50701 * 120.00079 * 7.17318 * 6 5 3 8 8 C 1.50705 * 119.99895 * 187.17756 * 6 5 3 9 9 N 1.46898 * 109.47147 * 95.00125 * 8 6 5 10 10 C 1.46961 * 111.00106 * 169.99800 * 9 8 6 11 11 C 1.53044 * 109.36433 * 183.18656 * 10 9 8 12 12 N 1.46956 * 109.36577 * 301.59550 * 11 10 9 13 13 C 1.46898 * 110.99938 * 183.18837 * 12 11 10 14 14 C 1.50703 * 109.46947 * 170.00380 * 13 12 11 15 15 H 1.07994 * 119.99965 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99823 * 179.72854 * 14 13 12 17 17 N 1.31512 * 120.00019 * 0.27290 * 16 14 13 18 18 Si 1.86802 * 120.00032 * 180.27575 * 16 14 13 19 19 H 1.48500 * 109.47098 * 59.99760 * 18 16 14 20 20 H 1.48500 * 109.47273 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46810 * 299.99916 * 18 16 14 22 22 C 1.46955 * 110.87634 * 59.32528 * 12 11 10 23 23 C 1.46959 * 110.99970 * 293.79760 * 9 8 6 24 24 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47225 * 300.00036 * 1 2 3 26 26 H 1.09001 * 109.47160 * 60.00367 * 1 2 3 27 27 H 1.08005 * 120.00144 * 6.01519 * 5 3 2 28 28 H 1.08997 * 109.46960 * 275.52080 * 7 6 5 29 29 H 1.08996 * 109.46878 * 35.52032 * 7 6 5 30 30 H 1.09003 * 109.47162 * 155.52044 * 7 6 5 31 31 H 1.08999 * 109.47093 * 334.99728 * 8 6 5 32 32 H 1.09003 * 109.46580 * 214.99954 * 8 6 5 33 33 H 1.09002 * 109.48875 * 63.21775 * 10 9 8 34 34 H 1.09002 * 109.48588 * 303.15445 * 10 9 8 35 35 H 1.09007 * 109.48693 * 181.63194 * 11 10 9 36 36 H 1.08999 * 109.49075 * 61.56923 * 11 10 9 37 37 H 1.08998 * 109.47287 * 50.00683 * 13 12 11 38 38 H 1.09000 * 109.47362 * 290.00540 * 13 12 11 39 39 H 0.97007 * 120.00004 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.49184 * 60.64622 * 22 12 11 41 41 H 1.09005 * 109.48895 * 180.70758 * 22 12 11 42 42 H 1.09006 * 109.48615 * 296.78031 * 23 9 8 43 43 H 1.08998 * 109.48889 * 56.84220 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2011 0.0000 4 8 1.4020 2.2204 0.0005 5 6 3.5314 1.2781 0.0006 6 6 4.1358 2.4575 0.1213 7 6 3.3253 3.6927 0.4190 8 6 5.6309 2.5581 -0.0398 9 7 5.9503 2.9303 -1.4244 10 6 7.3735 3.2688 -1.5639 11 6 7.6482 3.7263 -2.9983 12 7 7.2705 2.6560 -3.9319 13 6 7.5899 3.0283 -5.3166 14 6 7.4209 1.8274 -6.2113 15 1 7.1073 0.8824 -5.7931 16 6 7.6609 1.9369 -7.5646 17 7 8.0424 3.0878 -8.0738 18 14 7.4441 0.4503 -8.6748 19 1 6.0394 -0.0251 -8.5968 20 1 7.7613 0.8281 -10.0755 21 1 8.3587 -0.6337 -8.2347 22 6 5.8472 2.3176 -3.7925 23 6 5.5724 1.8601 -2.3580 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 4.1194 0.3774 -0.0970 28 1 2.9284 4.0996 -0.5110 29 1 2.5009 3.4347 1.0838 30 1 3.9604 4.4369 0.8995 31 1 6.0868 1.5956 0.1921 32 1 6.0192 3.3171 0.6394 33 1 7.9797 2.3911 -1.3397 34 1 7.6259 4.0719 -0.8714 35 1 8.7089 3.9502 -3.1118 36 1 7.0625 4.6200 -3.2134 37 1 8.6205 3.3791 -5.3700 38 1 6.9184 3.8223 -5.6435 39 1 8.2109 3.1649 -9.0260 40 1 5.2410 3.1954 -4.0166 41 1 5.5948 1.5146 -4.4850 42 1 6.1582 0.9663 -2.1429 43 1 4.5118 1.6362 -2.2445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931551586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -54.079378 kcal Electronic energy + Delta-G solvation = -22478.247866 eV Core-core repulsion = 19138.235598 eV Total energy + Delta-G solvation = -3340.012267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54708 -38.99945 -37.07433 -35.87520 -33.88241 -32.32516 -30.45502 -29.24718 -28.39341 -27.18857 -26.17671 -23.99245 -23.15239 -21.88210 -21.30163 -19.20297 -18.88273 -17.77672 -16.51524 -16.31172 -16.23680 -15.90087 -14.94079 -14.88846 -14.57073 -14.23453 -13.88209 -13.79049 -13.75337 -13.26809 -13.17674 -12.69999 -12.41454 -12.19013 -12.08060 -11.93268 -11.76927 -11.58571 -11.17223 -10.92364 -10.88213 -10.75949 -10.65379 -10.44562 -10.31767 -10.15543 -9.72279 -9.45604 -9.18583 -8.43113 -8.22931 -7.23655 -6.01991 -4.03591 0.94941 2.63891 2.79884 3.34028 3.37981 3.40826 4.09424 4.42828 4.50543 4.64358 4.90651 4.94038 4.94720 4.98696 5.18231 5.28725 5.31678 5.33573 5.40219 5.49879 5.53819 5.69157 5.75163 5.80013 5.88382 5.91703 6.04293 6.07707 6.15737 6.27858 6.40425 6.41891 6.57827 6.68923 7.11010 7.12332 7.33613 7.37131 7.67013 7.79991 8.09086 8.20452 8.55325 9.03591 9.60628 11.08864 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017619 B = 0.003796 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.840157 B = 7374.895801 C = 8553.044713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.495 3.505 4 O -0.508 6.508 5 C -0.217 4.217 6 C 0.008 3.992 7 C -0.123 4.123 8 C 0.079 3.921 9 N -0.532 5.532 10 C 0.063 3.937 11 C 0.056 3.944 12 N -0.539 5.539 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.062 0.938 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.068 3.932 23 C 0.053 3.947 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.138 0.862 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.041 0.959 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.030 0.970 38 H -0.008 1.008 39 H 0.262 0.738 40 H 0.029 0.971 41 H 0.087 0.913 42 H 0.041 0.959 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -2.629 19.161 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.343 3.657 4 O -0.399 6.399 5 C -0.237 4.237 6 C 0.006 3.994 7 C -0.179 4.179 8 C -0.048 4.048 9 N -0.257 5.257 10 C -0.065 4.065 11 C -0.073 4.073 12 N -0.264 5.264 13 C 0.069 3.931 14 C -0.547 4.547 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.060 4.060 23 C -0.075 4.075 24 H 0.118 0.882 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.155 0.845 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.060 0.940 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.048 0.952 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.105 0.895 42 H 0.059 0.941 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.672 -2.251 18.970 21.412 hybrid contribution -0.272 -0.768 -0.776 1.125 sum -9.945 -3.019 18.194 20.953 Atomic orbital electron populations 1.23226 0.76445 1.03537 1.02465 1.86602 1.23267 1.33137 1.84561 1.21517 0.90025 0.81147 0.73043 1.90832 1.67471 1.35548 1.46051 1.21690 0.89853 0.99538 1.12592 1.22632 0.95966 0.94502 0.86253 1.21172 0.99103 0.94423 1.03215 1.21242 0.90589 1.00954 0.92053 1.62143 1.19740 1.41061 1.02802 1.22187 0.86636 0.99765 0.97898 1.22065 1.00308 0.93708 0.91212 1.62300 1.17009 1.38664 1.08440 1.19692 0.96094 0.95773 0.81531 1.21117 1.45520 0.96417 0.91658 0.91980 1.24987 0.95393 0.96048 0.98140 1.69951 1.46804 1.24121 1.12948 0.86565 0.78613 0.82856 0.79400 1.20273 1.21348 1.20171 1.21977 0.89632 1.00544 0.93894 1.22367 1.00049 0.92065 0.93021 0.88231 0.92071 0.91857 0.84468 0.89438 0.89856 0.92013 0.93340 0.89297 0.94033 0.90970 0.90853 0.95056 0.95218 0.99059 0.92865 0.95317 0.89504 0.94084 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.57 101.05 1.07 1.38 16 2 O -0.36 -4.12 10.58 -40.77 -0.43 -4.55 16 3 C 0.50 6.23 7.76 34.26 0.27 6.49 16 4 O -0.51 -7.25 13.07 -19.29 -0.25 -7.51 16 5 C -0.22 -2.44 8.29 -37.85 -0.31 -2.76 16 6 C 0.01 0.09 5.01 -101.14 -0.51 -0.42 16 7 C -0.12 -1.36 8.48 36.01 0.31 -1.06 16 8 C 0.08 0.86 5.14 -4.97 -0.03 0.83 16 9 N -0.53 -7.53 4.70 -235.90 -1.11 -8.64 16 10 C 0.06 0.90 5.61 -3.77 -0.02 0.88 16 11 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 12 N -0.54 -11.68 4.70 -235.91 -1.11 -12.78 16 13 C 0.19 5.09 4.72 -4.98 -0.02 5.07 16 14 C -0.51 -14.31 8.47 -34.44 -0.29 -14.60 16 15 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.07 1.36 5.43 -3.77 -0.02 1.34 16 23 C 0.05 0.83 5.31 -3.77 -0.02 0.81 16 24 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.14 1.37 7.99 -52.48 -0.42 0.96 16 28 H 0.09 1.11 8.04 -51.93 -0.42 0.69 16 29 H 0.08 0.96 6.13 -51.93 -0.32 0.64 16 30 H 0.06 0.58 8.03 -51.93 -0.42 0.16 16 31 H 0.05 0.50 7.97 -51.93 -0.41 0.08 16 32 H 0.09 0.82 7.95 -51.93 -0.41 0.41 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 1.85 6.79 -51.93 -0.35 1.50 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.08 6.23 -51.93 -0.32 0.76 16 LS Contribution 346.89 15.07 5.23 5.23 Total: -1.00 -31.49 346.89 -8.88 -40.37 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -7.22 Total: -3.12 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 0.30 Total: 0.44 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.48 Total: -47.53 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -0.68 Total: -12.06 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.49 -8.88 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931551586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.706 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds