Wall clock time and date at job start Tue Mar 31 2020 05:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47538 * 2 1 4 4 H 1.09000 * 110.54031 * 51.00353 * 3 2 1 5 5 C 1.55133 * 110.52312 * 288.22664 * 3 2 1 6 6 C 1.54992 * 102.09343 * 220.39464 * 5 3 2 7 7 O 1.44382 * 103.48924 * 37.10703 * 6 5 3 8 8 C 1.43745 * 106.97423 * 319.93538 * 7 6 5 9 9 H 1.08990 * 109.88057 * 266.94184 * 8 7 6 10 10 C 1.50697 * 109.87326 * 145.93846 * 8 7 6 11 11 O 1.21277 * 120.00573 * 339.57300 * 10 8 7 12 12 N 1.34779 * 119.99862 * 159.57522 * 10 8 7 13 13 C 1.46966 * 120.59725 * 185.21983 * 12 10 8 14 14 C 1.53373 * 108.63781 * 235.20590 * 13 12 10 15 15 N 1.46962 * 108.63174 * 310.57759 * 14 13 12 16 16 C 1.36938 * 120.59348 * 235.20298 * 15 14 13 17 17 H 1.07999 * 120.00439 * 150.01267 * 16 15 14 18 18 C 1.38823 * 119.99963 * 330.01085 * 16 15 14 19 19 N 1.31615 * 119.99578 * 345.27657 * 18 16 15 20 20 Si 1.86795 * 120.00053 * 165.27245 * 18 16 15 21 21 H 1.48499 * 109.47308 * 60.00317 * 20 18 16 22 22 H 1.48503 * 109.47115 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47296 * 299.99983 * 20 18 16 24 24 C 1.46970 * 118.81510 * 55.47884 * 15 14 13 25 25 C 1.46967 * 120.59065 * 5.20216 * 12 10 8 26 26 H 1.08999 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46758 * 300.00035 * 1 2 3 28 28 H 1.08997 * 109.46987 * 60.00088 * 1 2 3 29 29 H 1.09005 * 109.47061 * 239.99315 * 2 1 3 30 30 H 1.09007 * 109.47097 * 119.99852 * 2 1 3 31 31 H 1.09000 * 110.83825 * 102.22868 * 5 3 2 32 32 H 1.08999 * 110.97833 * 338.62609 * 5 3 2 33 33 H 1.09000 * 110.61874 * 278.60532 * 6 5 3 34 34 H 1.09006 * 110.75508 * 155.67023 * 6 5 3 35 35 H 1.09003 * 109.60513 * 115.46207 * 13 12 10 36 36 H 1.08998 * 109.74806 * 355.03693 * 13 12 10 37 37 H 1.08998 * 109.60877 * 190.83171 * 14 13 12 38 38 H 1.09000 * 109.60535 * 70.32142 * 14 13 12 39 39 H 0.97000 * 120.00106 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.60899 * 64.26288 * 24 15 14 41 41 H 1.08999 * 109.60936 * 184.77446 * 24 15 14 42 42 H 1.09000 * 109.61085 * 244.53507 * 25 12 10 43 43 H 1.09000 * 109.61440 * 4.87743 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5621 2.0171 0.7933 5 6 1.7930 2.1067 -1.3800 6 6 3.1005 2.9116 -1.5917 7 8 4.1189 2.0519 -1.0364 8 6 3.5724 1.4727 0.1604 9 1 3.8428 2.0809 1.0234 10 6 4.0970 0.0711 0.3369 11 8 4.5464 -0.5326 -0.6142 12 7 4.0667 -0.5118 1.5517 13 6 4.6772 -1.8317 1.7636 14 6 3.6195 -2.7719 2.3549 15 7 2.9756 -2.0986 3.4915 16 6 2.9448 -2.6907 4.7259 17 1 2.9370 -2.0810 5.6173 18 6 2.9235 -4.0748 4.8314 19 7 2.6427 -4.8109 3.7771 20 14 3.2935 -4.8923 6.4697 21 1 2.3063 -4.4401 7.4827 22 1 3.2072 -6.3670 6.3177 23 1 4.6616 -4.5199 6.9110 24 6 2.3601 -0.7812 3.2783 25 6 3.4227 0.1614 2.6884 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5140 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 0.9294 2.7706 -1.3416 32 1 1.6691 1.3541 -2.1587 33 1 3.0605 3.8576 -1.0517 34 1 3.2805 3.0840 -2.6529 35 1 5.5140 -1.7407 2.4562 36 1 5.0310 -2.2308 0.8130 37 1 4.0965 -3.6906 2.6962 38 1 2.8721 -3.0047 1.5964 39 1 2.6274 -5.7779 3.8509 40 1 1.5251 -0.8756 2.5841 41 1 2.0051 -0.3850 4.2297 42 1 4.1701 0.3942 3.4469 43 1 2.9484 1.0817 2.3477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948858846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:00 Heat of formation + Delta-G solvation = -49.291953 kcal Electronic energy + Delta-G solvation = -24231.561105 eV Core-core repulsion = 20891.756436 eV Total energy + Delta-G solvation = -3339.804669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.69981 -38.47262 -36.65167 -34.74126 -33.79584 -31.22011 -30.85933 -30.20523 -29.04213 -26.83487 -24.12026 -23.52465 -22.99530 -22.45314 -21.21035 -19.88556 -18.58037 -17.26217 -16.66061 -16.23912 -15.98287 -15.07735 -14.89143 -14.60995 -14.50154 -14.29480 -13.63844 -13.52787 -13.30115 -13.26704 -13.00815 -12.75891 -12.36539 -11.96408 -11.76175 -11.62510 -11.30363 -11.18597 -11.08438 -10.83640 -10.78844 -10.71018 -10.66259 -10.40647 -10.22320 -10.00734 -9.96088 -9.81640 -9.06777 -8.59773 -8.21924 -6.69871 -5.86059 -3.34219 2.89661 3.22889 3.33887 3.40423 3.40874 4.04817 4.33753 4.42798 4.59690 4.64706 4.91214 5.06688 5.16146 5.23649 5.30531 5.32955 5.41279 5.46858 5.55192 5.60101 5.70049 5.73618 5.78701 5.82944 5.85989 5.99941 6.12794 6.22278 6.26659 6.31642 6.37231 6.40251 6.49514 6.70342 6.77773 6.89530 7.25969 7.55186 7.70562 7.89628 8.35891 8.59277 9.10752 9.72577 10.30000 11.21031 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030314 B = 0.004850 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.432234 B = 5771.589197 C = 6064.868644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C -0.106 4.106 4 H 0.091 0.909 5 C -0.147 4.147 6 C 0.045 3.955 7 O -0.351 6.351 8 C 0.062 3.938 9 H 0.087 0.913 10 C 0.518 3.482 11 O -0.536 6.536 12 N -0.598 5.598 13 C 0.087 3.913 14 C 0.160 3.840 15 N -0.589 5.589 16 C -0.260 4.260 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.901 5.901 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.129 3.871 25 C 0.085 3.915 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.024 0.976 39 H 0.256 0.744 40 H 0.029 0.971 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 14.421 -6.403 15.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.125 4.125 4 H 0.109 0.891 5 C -0.185 4.185 6 C -0.032 4.032 7 O -0.269 6.269 8 C 0.000 4.000 9 H 0.105 0.895 10 C 0.304 3.696 11 O -0.413 6.413 12 N -0.332 5.332 13 C -0.036 4.036 14 C 0.034 3.966 15 N -0.312 5.312 16 C -0.389 4.389 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.544 5.544 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.002 3.998 25 C -0.039 4.039 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.112 0.888 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.116 13.846 -6.991 15.654 hybrid contribution -0.073 -0.363 1.007 1.073 sum -2.189 13.483 -5.983 14.912 Atomic orbital electron populations 1.21698 0.95266 1.02006 1.01183 1.22035 0.96626 0.94520 1.04688 1.22585 0.92937 0.98642 0.98375 0.89070 1.23290 0.98245 0.99817 0.97139 1.23592 0.86888 0.93186 0.99550 1.88971 1.37121 1.61525 1.39267 1.22791 0.93882 0.93368 0.89925 0.89548 1.20148 0.78863 0.87542 0.82998 1.90656 1.46794 1.64740 1.39148 1.48037 1.56396 1.20237 1.08519 1.22517 0.97477 0.82679 1.00910 1.21184 0.92329 0.94539 0.88590 1.43953 1.62808 1.16791 1.07620 1.19126 1.46447 0.89376 0.83966 0.91634 1.25130 0.99836 0.97077 0.97200 1.69980 1.50621 1.04915 1.28921 0.86338 0.78481 0.78315 0.83392 1.20829 1.21579 1.20916 1.21450 0.92488 0.87509 0.98385 1.22525 0.97245 0.95668 0.88499 0.92406 0.92703 0.93191 0.91385 0.88959 0.90041 0.90056 0.92125 0.88812 0.92163 0.90158 0.88284 0.95817 0.93360 0.95282 0.91515 0.91495 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.80 37.16 0.36 -1.39 16 2 C -0.14 -2.03 4.16 -26.73 -0.11 -2.14 16 3 C -0.11 -1.28 2.25 -88.92 -0.20 -1.48 16 4 H 0.09 0.90 8.00 -51.93 -0.42 0.49 16 5 C -0.15 -1.51 6.12 -24.55 -0.15 -1.66 16 6 C 0.04 0.47 7.72 38.21 0.29 0.77 16 7 O -0.35 -5.43 10.82 -53.88 -0.58 -6.02 16 8 C 0.06 0.90 2.91 -27.31 -0.08 0.82 16 9 H 0.09 1.09 6.96 -51.93 -0.36 0.73 16 10 C 0.52 9.52 4.91 -10.99 -0.05 9.47 16 11 O -0.54 -11.88 15.99 -13.09 -0.21 -12.09 16 12 N -0.60 -10.86 2.25 -172.21 -0.39 -11.25 16 13 C 0.09 1.77 6.59 -3.60 -0.02 1.75 16 14 C 0.16 3.75 5.48 -3.60 -0.02 3.73 16 15 N -0.59 -13.93 2.96 -171.76 -0.51 -14.44 16 16 C -0.26 -6.76 9.57 -15.06 -0.14 -6.90 16 17 H 0.07 1.66 7.87 -52.49 -0.41 1.25 16 18 C 0.01 0.18 4.96 -17.43 -0.09 0.10 16 19 N -0.90 -25.36 11.16 55.49 0.62 -24.74 16 20 Si 0.91 20.98 29.58 -169.99 -5.03 15.95 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.13 2.44 6.37 -3.36 -0.02 2.42 16 25 C 0.09 1.36 5.55 -3.37 -0.02 1.34 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.52 7.69 -51.93 -0.40 0.12 16 29 H 0.07 1.13 7.66 -51.93 -0.40 0.73 16 30 H 0.09 1.55 3.07 -51.92 -0.16 1.39 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.91 7.76 -51.93 -0.40 0.51 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.66 7.00 -51.93 -0.36 1.29 16 37 H 0.10 2.58 6.04 -51.93 -0.31 2.27 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.03 0.56 6.31 -51.93 -0.33 0.24 16 41 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.89 5.12 -51.93 -0.27 0.62 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -31.30 325.31 -8.19 -39.50 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.75 Total: 1.38 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.25 Total: 6.81 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.28 Total: -50.43 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.79 Total: -18.10 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.30 -8.19 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948858846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.796 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds