Wall clock time and date at job start Tue Mar 31 2020 05:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46988 * 2 1 4 4 C 1.53000 * 109.46754 * 240.00057 * 2 1 3 5 5 C 1.50704 * 109.47153 * 60.00024 * 4 2 1 6 6 O 1.21276 * 120.00017 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99540 * 179.97438 * 5 4 2 8 8 C 1.47422 * 125.65574 * 0.02562 * 7 5 4 9 9 C 1.54904 * 104.83588 * 155.83543 * 8 7 5 10 10 C 1.55163 * 101.58089 * 37.01349 * 9 8 7 11 11 H 1.09002 * 110.71868 * 83.03475 * 10 9 8 12 12 N 1.46490 * 110.71993 * 206.13410 * 10 9 8 13 13 C 1.36935 * 120.00121 * 273.54103 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46653 * 299.99639 * 17 15 13 20 20 H 1.48495 * 109.47483 * 60.00002 * 17 15 13 21 21 C 1.47030 * 125.64522 * 179.97438 * 7 5 4 22 22 C 1.52995 * 109.47187 * 120.00173 * 2 1 3 23 23 C 1.52999 * 117.50016 * 13.61905 * 22 2 1 24 24 C 1.52996 * 59.99969 * 252.51136 * 23 22 2 25 25 H 1.09000 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.46771 * 299.99889 * 1 2 3 27 27 H 1.08997 * 109.47215 * 59.99754 * 1 2 3 28 28 H 0.96696 * 113.99401 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47338 * 299.99581 * 4 2 1 30 30 H 1.08997 * 109.46938 * 180.02562 * 4 2 1 31 31 H 1.09000 * 110.36241 * 36.99895 * 8 7 5 32 32 H 1.08998 * 110.46123 * 274.72889 * 8 7 5 33 33 H 1.08994 * 111.00996 * 278.93912 * 9 8 7 34 34 H 1.09004 * 111.00310 * 155.08595 * 9 8 7 35 35 H 0.97000 * 120.00577 * 93.54703 * 12 10 9 36 36 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 37 37 H 1.08999 * 109.88565 * 61.67072 * 21 7 5 38 38 H 1.08999 * 109.87582 * 300.50826 * 21 7 5 39 39 H 1.09003 * 115.55092 * 159.32879 * 22 2 1 40 40 H 1.09001 * 117.50074 * 0.02562 * 23 22 2 41 41 H 1.09010 * 117.49725 * 145.02101 * 23 22 2 42 42 H 1.09000 * 117.49882 * 252.50866 * 24 23 22 43 43 H 1.08999 * 117.51924 * 107.48583 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5375 -0.0108 -2.4797 6 8 0.8399 0.9750 -2.3684 7 7 1.8635 -0.4710 -3.7038 8 6 2.6993 -1.6529 -3.9830 9 6 2.2747 -2.1132 -5.3998 10 6 2.0302 -0.7547 -6.1085 11 1 2.9676 -0.3378 -6.4770 12 7 1.0672 -0.9063 -7.2018 13 6 1.4980 -1.2798 -8.4469 14 1 2.5477 -1.4629 -8.6226 15 6 0.5855 -1.4230 -9.4831 16 7 -0.6938 -1.1992 -9.2690 17 14 1.1731 -1.9331 -11.1813 18 1 0.0119 -2.0137 -12.1034 19 1 2.1414 -0.9297 -11.6921 20 1 1.8332 -3.2607 -11.0986 21 6 1.4436 0.1220 -4.9820 22 6 2.0400 -0.7213 1.2492 23 6 1.0320 -1.5509 2.0470 24 6 1.5416 -0.2213 2.6065 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 2.9703 1.4236 -0.0004 29 1 1.6766 -1.7489 -1.2493 30 1 3.1299 -0.7217 -1.2491 31 1 2.5011 -2.4384 -3.2537 32 1 3.7555 -1.3839 -3.9721 33 1 1.3594 -2.7038 -5.3610 34 1 3.0761 -2.6691 -5.8866 35 1 0.1243 -0.7421 -7.0440 36 1 -0.9990 -0.9347 -8.3871 37 1 1.8296 1.1380 -5.0639 38 1 0.3556 0.1302 -5.0470 39 1 3.0642 -1.0902 1.1938 40 1 0.0055 -1.5832 1.6817 41 1 1.3929 -2.4660 2.5166 42 1 2.2378 -0.2616 3.4443 43 1 0.8507 0.6218 2.6097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968446821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:35 Heat of formation + Delta-G solvation = -64.180160 kcal Electronic energy + Delta-G solvation = -22671.287292 eV Core-core repulsion = 19330.837022 eV Total energy + Delta-G solvation = -3340.450270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.43882 -39.95454 -38.53093 -36.37721 -36.20041 -33.48287 -32.57643 -30.96544 -29.82474 -28.34214 -25.70176 -24.94142 -23.88369 -23.21113 -21.78857 -20.64186 -20.26494 -19.53360 -18.33006 -17.66642 -17.30701 -16.98970 -16.48398 -16.22849 -15.83579 -15.65801 -15.28605 -14.89851 -14.64103 -14.33129 -13.93870 -13.71445 -13.47165 -13.37539 -13.29642 -12.83089 -12.73047 -12.64887 -12.46191 -12.38485 -12.06897 -11.88999 -11.82672 -11.81692 -11.40804 -11.30445 -11.09070 -10.96681 -10.93156 -10.53927 -9.68296 -9.17309 -8.40714 -5.36713 1.59572 1.64640 1.69797 1.85510 1.90595 2.71989 2.79930 3.32788 3.40189 3.56434 3.57463 3.62635 3.73879 3.86592 3.96484 4.06414 4.16189 4.16784 4.25936 4.30320 4.37603 4.41609 4.52136 4.62644 4.74496 4.78330 4.81019 4.91118 4.91860 4.98908 5.03998 5.12682 5.20217 5.26047 5.29636 5.35729 5.44370 5.59432 6.45612 6.55416 6.94623 7.03689 7.19910 7.92725 8.06118 9.10613 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043752 B = 0.003047 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.812519 B = 9187.792308 C = 9310.728019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 O -0.564 6.564 4 C -0.150 4.150 5 C 0.518 3.482 6 O -0.568 6.568 7 N -0.618 5.618 8 C 0.107 3.893 9 C -0.145 4.145 10 C 0.169 3.831 11 H 0.066 0.934 12 N -0.745 5.745 13 C -0.328 4.328 14 H 0.075 0.925 15 C -0.106 4.106 16 N -0.977 5.977 17 Si 1.130 2.870 18 H -0.297 1.297 19 H -0.277 1.277 20 H -0.273 1.273 21 C 0.111 3.889 22 C -0.183 4.183 23 C -0.174 4.174 24 C -0.171 4.171 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.382 0.618 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.357 0.643 36 H 0.242 0.758 37 H 0.056 0.944 38 H 0.038 0.962 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.401 -4.061 23.390 26.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.138 3.862 3 O -0.371 6.371 4 C -0.189 4.189 5 C 0.308 3.692 6 O -0.447 6.447 7 N -0.353 5.353 8 C -0.015 4.015 9 C -0.186 4.186 10 C 0.060 3.940 11 H 0.084 0.916 12 N -0.386 5.386 13 C -0.460 4.460 14 H 0.093 0.907 15 C -0.297 4.297 16 N -0.625 5.625 17 Si 0.954 3.046 18 H -0.223 1.223 19 H -0.203 1.203 20 H -0.199 1.199 21 C -0.013 4.013 22 C -0.202 4.202 23 C -0.211 4.211 24 C -0.208 4.208 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.230 0.770 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.122 0.878 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.189 0.811 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.146 0.854 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.143 -3.743 21.934 24.454 hybrid contribution 0.185 0.634 1.240 1.405 sum 10.327 -3.109 23.174 25.561 Atomic orbital electron populations 1.22096 0.94222 1.02354 1.02684 1.20315 0.93960 0.81365 0.90546 1.86694 1.27164 1.26343 1.96893 1.22424 1.04462 1.01599 0.90432 1.21013 0.79851 0.84325 0.83973 1.90681 1.39474 1.28298 1.86259 1.48653 1.51702 1.30349 1.04552 1.22527 0.95334 0.86864 0.96733 1.23336 1.01696 0.98351 0.95187 1.21331 0.92484 0.94025 0.86202 0.91600 1.42584 1.05245 1.83304 1.07496 1.20378 0.95052 1.41780 0.88742 0.90678 1.27278 0.93944 1.01299 1.07204 1.71001 1.15666 1.52254 1.23603 0.82612 0.74384 0.76747 0.70864 1.22347 1.20322 1.19871 1.21885 0.98401 0.96981 0.84064 1.22959 1.00580 1.04706 0.91909 1.23200 0.99302 0.95509 1.03062 1.22889 1.03924 0.97827 0.96194 0.90076 0.92511 0.92670 0.76988 0.86005 0.85537 0.87767 0.88713 0.92791 0.89354 0.81060 0.94757 0.92539 0.94320 0.85377 0.88542 0.87059 0.87457 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 7.18 71.98 0.52 -3.19 16 2 C 0.18 3.43 0.80 -10.80 -0.01 3.43 16 3 O -0.56 -13.24 11.85 -131.53 -1.56 -14.80 16 4 C -0.15 -2.58 3.96 29.85 0.12 -2.46 16 5 C 0.52 14.85 7.41 87.66 0.65 15.50 16 6 O -0.57 -21.72 13.28 14.44 0.19 -21.53 16 7 N -0.62 -17.78 3.33 -811.80 -2.70 -20.48 16 8 C 0.11 2.29 6.69 86.85 0.58 2.87 16 9 C -0.14 -4.39 6.77 31.99 0.22 -4.18 16 10 C 0.17 6.47 3.59 46.18 0.17 6.64 16 11 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 12 N -0.74 -37.24 5.25 -317.34 -1.67 -38.91 16 13 C -0.33 -17.99 9.98 84.03 0.84 -17.15 16 14 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 15 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16 16 N -0.98 -61.74 13.70 21.65 0.30 -61.45 16 17 Si 1.13 51.10 29.92 68.60 2.05 53.15 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 C 0.11 4.06 6.61 86.73 0.57 4.64 16 22 C -0.18 -2.36 5.32 -10.80 -0.06 -2.42 16 23 C -0.17 -2.08 9.65 30.59 0.30 -1.79 16 24 C -0.17 -2.32 9.85 30.59 0.30 -2.02 16 25 H 0.08 1.57 6.74 -2.39 -0.02 1.55 16 26 H 0.06 1.31 6.96 -2.38 -0.02 1.30 16 27 H 0.05 1.77 5.51 -2.39 -0.01 1.75 16 28 H 0.38 5.79 9.04 -74.06 -0.67 5.12 16 29 H 0.12 1.62 7.85 -2.39 -0.02 1.60 16 30 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.10 1.56 7.48 -2.39 -0.02 1.55 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.36 19.25 6.34 -92.71 -0.59 18.67 16 36 H 0.24 15.38 6.77 -92.71 -0.63 14.75 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.62 7.69 -2.39 -0.02 1.60 16 39 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.10 1.29 5.89 -2.39 -0.01 1.27 16 41 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.39 7.29 -2.39 -0.02 1.37 16 Total: -1.00 -76.40 340.60 1.18 -75.23 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.09 Total: 34.58 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.66 Total: -5.79 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -4.07 Total: -120.83 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -1.37 Total: -36.33 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -76.40 1.18 -75.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968446821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.045 kcal (2) G-P(sol) polarization free energy of solvation -76.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds