Wall clock time and date at job start Tue Mar 31 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46981 * 2 1 4 4 H 1.09007 * 110.54084 * 52.88013 * 3 2 1 5 5 C 1.54808 * 110.48974 * 290.26773 * 3 2 1 6 6 C 1.54997 * 102.09274 * 220.44414 * 5 3 2 7 7 O 1.44383 * 103.48980 * 37.01730 * 6 5 3 8 8 C 1.43738 * 106.97411 * 319.94240 * 7 6 5 9 9 H 1.08999 * 109.87873 * 266.93325 * 8 7 6 10 10 C 1.50703 * 109.87652 * 145.93690 * 8 7 6 11 11 O 1.21285 * 120.00024 * 345.00257 * 10 8 7 12 12 N 1.34783 * 120.00148 * 164.99620 * 10 8 7 13 13 C 1.47421 * 125.64652 * 354.84472 * 12 10 8 14 14 C 1.54908 * 104.83287 * 155.83385 * 13 12 10 15 15 C 1.55160 * 101.57920 * 37.00930 * 14 13 12 16 16 H 1.08998 * 110.71944 * 83.03901 * 15 14 13 17 17 N 1.46497 * 110.71881 * 206.13204 * 15 14 13 18 18 C 1.36930 * 120.00609 * 273.54629 * 17 15 14 19 19 H 1.08004 * 119.99730 * 359.72823 * 18 17 15 20 20 C 1.38806 * 120.00682 * 180.02562 * 18 17 15 21 21 N 1.31629 * 119.99765 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00574 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47053 * 59.99410 * 22 20 18 24 24 H 1.48498 * 109.47336 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47050 * 299.99914 * 22 20 18 26 26 C 1.47013 * 125.64808 * 174.80599 * 12 10 8 27 27 H 1.09004 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47048 * 299.99834 * 1 2 3 29 29 H 1.08995 * 109.46977 * 60.00033 * 1 2 3 30 30 H 1.08995 * 109.47048 * 240.00166 * 2 1 3 31 31 H 1.09005 * 109.46922 * 119.99934 * 2 1 3 32 32 H 1.08997 * 110.91547 * 102.24351 * 5 3 2 33 33 H 1.09004 * 110.93447 * 338.64790 * 5 3 2 34 34 H 1.09000 * 110.61621 * 278.51993 * 6 5 3 35 35 H 1.09001 * 110.62119 * 155.51945 * 6 5 3 36 36 H 1.09002 * 110.36387 * 36.99924 * 13 12 10 37 37 H 1.09000 * 110.46528 * 274.72214 * 13 12 10 38 38 H 1.08996 * 111.00572 * 278.93890 * 14 13 12 39 39 H 1.08997 * 111.00453 * 155.08293 * 14 13 12 40 40 H 0.97001 * 119.99512 * 93.55373 * 17 15 14 41 41 H 0.96996 * 119.99962 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.88992 * 61.68035 * 26 12 10 43 43 H 1.09006 * 109.88625 * 300.51147 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5867 2.0084 0.8139 5 6 1.7470 2.1208 -1.3604 6 6 3.0471 2.9277 -1.6075 7 8 4.0831 2.0625 -1.0950 8 6 3.5765 1.4714 0.1133 9 1 3.8758 2.0710 0.9730 10 6 4.1061 0.0680 0.2584 11 8 4.6135 -0.4899 -0.6915 12 7 4.0159 -0.5672 1.4437 13 6 3.5245 0.0255 2.7009 14 6 3.0366 -1.1795 3.5433 15 6 4.0907 -2.2592 3.1820 16 1 4.9876 -2.1412 3.7900 17 7 3.5313 -3.6037 3.3423 18 6 3.5728 -4.2214 4.5636 19 1 4.0218 -3.7192 5.4078 20 6 3.0433 -5.4955 4.7154 21 7 2.5009 -6.1098 3.6854 22 14 3.0992 -6.3380 6.3817 23 1 2.3572 -5.5204 7.3748 24 1 2.4726 -7.6803 6.2790 25 1 4.5119 -6.4825 6.8161 26 6 4.3907 -1.9660 1.6969 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.8854 2.7844 -1.2867 33 1 1.5967 1.3765 -2.1424 34 1 3.0255 3.8683 -1.0572 35 1 3.1901 3.1084 -2.6729 36 1 2.6983 0.7079 2.5010 37 1 4.3304 0.5475 3.2167 38 1 2.0378 -1.4910 3.2377 39 1 3.0634 -0.9482 4.6081 40 1 3.1317 -4.0563 2.5832 41 1 2.1305 -7.0000 3.7915 42 1 5.4532 -2.1070 1.4986 43 1 3.8020 -2.6283 1.0620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968970470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:52 Heat of formation + Delta-G solvation = -65.438623 kcal Electronic energy + Delta-G solvation = -23423.581092 eV Core-core repulsion = 20083.076251 eV Total energy + Delta-G solvation = -3340.504841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81751 -38.80948 -37.04598 -34.93486 -34.05081 -31.62938 -30.52548 -29.76721 -29.41758 -27.50219 -24.36391 -23.49518 -23.01647 -22.56881 -20.87228 -20.07362 -18.89287 -17.42422 -17.18058 -16.63872 -16.27267 -15.79917 -14.87611 -14.75432 -14.53339 -14.33960 -13.97023 -13.54203 -13.49933 -13.25650 -12.81043 -12.59124 -12.40932 -12.32649 -11.91063 -11.73187 -11.68372 -11.41897 -11.23468 -11.18354 -10.85600 -10.83071 -10.72270 -10.69342 -10.37545 -10.15842 -10.12346 -9.77083 -9.36184 -8.98299 -8.38387 -7.06628 -5.83848 -3.14691 2.69611 2.92332 3.40005 3.44812 3.45875 3.85709 4.17743 4.42384 4.48859 4.52834 4.74675 4.93605 4.99892 5.03607 5.12041 5.23135 5.26918 5.31022 5.33945 5.42369 5.47797 5.53121 5.56961 5.63278 5.68600 5.74197 5.84714 5.93040 6.05471 6.08586 6.12252 6.22936 6.25961 6.34857 6.48528 6.56881 6.68523 6.88171 7.62846 7.69372 8.32225 8.34450 9.44939 9.99043 10.33733 11.38243 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.003930 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.596771 B = 7122.548918 C = 7427.835376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.350 6.350 8 C 0.066 3.934 9 H 0.088 0.912 10 C 0.533 3.467 11 O -0.526 6.526 12 N -0.613 5.613 13 C 0.094 3.906 14 C -0.153 4.153 15 C 0.172 3.828 16 H 0.064 0.936 17 N -0.715 5.715 18 C -0.246 4.246 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.103 3.897 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.124 19.352 -6.117 20.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.126 4.126 4 H 0.110 0.890 5 C -0.186 4.186 6 C -0.032 4.032 7 O -0.267 6.267 8 C 0.005 3.995 9 H 0.106 0.894 10 C 0.320 3.680 11 O -0.402 6.402 12 N -0.349 5.349 13 C -0.029 4.029 14 C -0.195 4.195 15 C 0.060 3.940 16 H 0.082 0.918 17 N -0.356 5.356 18 C -0.377 4.377 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.020 4.020 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.221 0.779 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.597 18.947 -6.643 20.245 hybrid contribution -0.382 -0.528 0.846 1.068 sum -2.979 18.419 -5.797 19.538 Atomic orbital electron populations 1.21722 0.95101 1.02164 1.01385 1.21924 0.96723 0.94523 1.04157 1.22519 0.92762 0.98526 0.98817 0.89005 1.23245 0.98403 0.99814 0.97118 1.23619 0.86373 0.93101 1.00145 1.88987 1.37877 1.60836 1.39040 1.22697 0.94105 0.92676 0.90051 0.89402 1.19859 0.79038 0.87328 0.81728 1.90711 1.43704 1.67559 1.38231 1.48444 1.64392 1.13508 1.08544 1.22469 0.98345 0.97367 0.84748 1.23564 1.01667 0.95016 0.99228 1.21181 0.94762 0.86711 0.91310 0.91792 1.42349 1.69916 1.12579 1.10768 1.19160 1.32868 0.97736 0.87917 0.91016 1.24766 1.01047 0.97260 0.97480 1.69657 1.44232 1.14667 1.29192 0.86250 0.77625 0.78749 0.83417 1.21192 1.21665 1.21166 1.22276 1.00341 0.80887 0.98497 0.92252 0.92706 0.92972 0.91301 0.89737 0.89892 0.89979 0.91971 0.88640 0.91318 0.91519 0.90544 0.90513 0.77945 0.93295 0.91589 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.79 37.16 0.36 -1.14 16 2 C -0.14 -1.65 4.11 -26.73 -0.11 -1.76 16 3 C -0.11 -1.09 2.31 -89.10 -0.21 -1.30 16 4 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 5 C -0.15 -1.30 6.00 -24.72 -0.15 -1.45 16 6 C 0.04 0.41 7.72 38.21 0.29 0.71 16 7 O -0.35 -4.92 10.78 -54.33 -0.59 -5.50 16 8 C 0.07 0.84 3.05 -27.31 -0.08 0.76 16 9 H 0.09 0.93 7.74 -51.93 -0.40 0.53 16 10 C 0.53 8.73 5.19 -10.98 -0.06 8.67 16 11 O -0.53 -10.90 16.92 -13.55 -0.23 -11.13 16 12 N -0.61 -9.38 2.22 -170.52 -0.38 -9.76 16 13 C 0.09 1.17 5.65 -2.53 -0.01 1.15 16 14 C -0.15 -2.37 6.77 -24.58 -0.17 -2.53 16 15 C 0.17 3.21 3.59 -66.10 -0.24 2.97 16 16 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 17 N -0.72 -17.11 5.25 -51.65 -0.27 -17.38 16 18 C -0.25 -6.52 9.98 -15.06 -0.15 -6.67 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.10 1.82 6.62 -3.07 -0.02 1.80 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.47 7.61 -51.93 -0.39 0.07 16 30 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 31 H 0.08 1.17 4.98 -51.93 -0.26 0.91 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.80 7.78 -51.93 -0.40 0.40 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.39 9.97 7.51 -40.82 -0.31 9.66 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.37 7.69 -51.93 -0.40 0.97 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -32.16 338.58 -8.39 -40.55 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.10 Total: 7.25 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.63 Total: 0.86 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: 0.07 Total: -53.83 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.81 Total: -16.63 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.16 -8.39 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968970470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.891 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds