Wall clock time and date at job start Tue Mar 31 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.46981 * 2 1 4 4 H 1.09007 * 110.54084 * 52.88013 * 3 2 1 5 5 C 1.54808 * 110.48974 * 290.26773 * 3 2 1 6 6 C 1.54997 * 102.09274 * 220.44414 * 5 3 2 7 7 O 1.44383 * 103.48980 * 37.01730 * 6 5 3 8 8 C 1.43738 * 106.97411 * 319.94240 * 7 6 5 9 9 H 1.08999 * 109.87873 * 266.93325 * 8 7 6 10 10 C 1.50703 * 109.87652 * 145.93690 * 8 7 6 11 11 O 1.21285 * 120.00024 * 345.00257 * 10 8 7 12 12 N 1.34783 * 120.00148 * 164.99620 * 10 8 7 13 13 C 1.47421 * 125.64652 * 354.84472 * 12 10 8 14 14 C 1.54908 * 104.83287 * 155.83385 * 13 12 10 15 15 C 1.55160 * 101.57920 * 37.00930 * 14 13 12 16 16 H 1.08998 * 110.71944 * 83.03901 * 15 14 13 17 17 N 1.46497 * 110.71881 * 206.13204 * 15 14 13 18 18 C 1.36930 * 120.00609 * 273.54629 * 17 15 14 19 19 H 1.08004 * 119.99730 * 359.72823 * 18 17 15 20 20 C 1.38806 * 120.00682 * 180.02562 * 18 17 15 21 21 N 1.31629 * 119.99765 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00574 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47053 * 59.99410 * 22 20 18 24 24 H 1.48498 * 109.47336 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47050 * 299.99914 * 22 20 18 26 26 C 1.47013 * 125.64808 * 174.80599 * 12 10 8 27 27 H 1.09004 * 109.47025 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47048 * 299.99834 * 1 2 3 29 29 H 1.08995 * 109.46977 * 60.00033 * 1 2 3 30 30 H 1.08995 * 109.47048 * 240.00166 * 2 1 3 31 31 H 1.09005 * 109.46922 * 119.99934 * 2 1 3 32 32 H 1.08997 * 110.91547 * 102.24351 * 5 3 2 33 33 H 1.09004 * 110.93447 * 338.64790 * 5 3 2 34 34 H 1.09000 * 110.61621 * 278.51993 * 6 5 3 35 35 H 1.09001 * 110.62119 * 155.51945 * 6 5 3 36 36 H 1.09002 * 110.36387 * 36.99924 * 13 12 10 37 37 H 1.09000 * 110.46528 * 274.72214 * 13 12 10 38 38 H 1.08996 * 111.00572 * 278.93890 * 14 13 12 39 39 H 1.08997 * 111.00453 * 155.08293 * 14 13 12 40 40 H 0.97001 * 119.99512 * 93.55373 * 17 15 14 41 41 H 0.96996 * 119.99962 * 180.02562 * 21 20 18 42 42 H 1.08997 * 109.88992 * 61.68035 * 26 12 10 43 43 H 1.09006 * 109.88625 * 300.51147 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5867 2.0084 0.8139 5 6 1.7470 2.1208 -1.3604 6 6 3.0471 2.9277 -1.6075 7 8 4.0831 2.0625 -1.0950 8 6 3.5765 1.4714 0.1133 9 1 3.8758 2.0710 0.9730 10 6 4.1061 0.0680 0.2584 11 8 4.6135 -0.4899 -0.6915 12 7 4.0159 -0.5672 1.4437 13 6 3.5245 0.0255 2.7009 14 6 3.0366 -1.1795 3.5433 15 6 4.0907 -2.2592 3.1820 16 1 4.9876 -2.1412 3.7900 17 7 3.5313 -3.6037 3.3423 18 6 3.5728 -4.2214 4.5636 19 1 4.0218 -3.7192 5.4078 20 6 3.0433 -5.4955 4.7154 21 7 2.5009 -6.1098 3.6854 22 14 3.0992 -6.3380 6.3817 23 1 2.3572 -5.5204 7.3748 24 1 2.4726 -7.6803 6.2790 25 1 4.5119 -6.4825 6.8161 26 6 4.3907 -1.9660 1.6969 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.8854 2.7844 -1.2867 33 1 1.5967 1.3765 -2.1424 34 1 3.0255 3.8683 -1.0572 35 1 3.1901 3.1084 -2.6729 36 1 2.6983 0.7079 2.5010 37 1 4.3304 0.5475 3.2167 38 1 2.0378 -1.4910 3.2377 39 1 3.0634 -0.9482 4.6081 40 1 3.1317 -4.0563 2.5832 41 1 2.1305 -7.0000 3.7915 42 1 5.4532 -2.1070 1.4986 43 1 3.8020 -2.6283 1.0620 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968970470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:51 Heat of formation + Delta-G solvation = -86.324769 kcal Electronic energy + Delta-G solvation = -23424.486784 eV Core-core repulsion = 20083.076251 eV Total energy + Delta-G solvation = -3341.410533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.90534 -39.93718 -38.44880 -36.12871 -35.56020 -33.35574 -31.40075 -31.13220 -30.55461 -28.94266 -25.85964 -24.83721 -24.16650 -23.48233 -21.83034 -21.56766 -20.05315 -19.32415 -18.27314 -17.62110 -17.48397 -17.02809 -16.42031 -15.89660 -15.69314 -15.43926 -15.31877 -15.16319 -14.64996 -14.40372 -14.26600 -13.73736 -13.59253 -13.37885 -13.14075 -13.02609 -12.96072 -12.64923 -12.58634 -12.36541 -12.18449 -12.13339 -12.10110 -11.75960 -11.69040 -11.66436 -11.56504 -11.12364 -10.91994 -10.50707 -9.69301 -9.03958 -7.93852 -5.24373 1.48114 1.49985 1.52887 1.58715 1.72750 2.57685 2.97588 3.27730 3.38934 3.47734 3.66422 3.74435 3.82162 3.95998 4.04884 4.15533 4.25212 4.27806 4.35692 4.40343 4.44167 4.48958 4.52060 4.65128 4.70501 4.79572 4.84011 4.85806 4.96693 4.99941 5.10862 5.15677 5.18043 5.22255 5.26846 5.36465 5.46050 5.54981 5.81120 6.26174 6.47358 7.06817 7.32761 8.04408 8.28240 9.29534 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.003930 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.596771 B = 7122.548918 C = 7427.835376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C -0.102 4.102 4 H 0.131 0.869 5 C -0.144 4.144 6 C 0.039 3.961 7 O -0.388 6.388 8 C 0.069 3.931 9 H 0.121 0.879 10 C 0.526 3.474 11 O -0.584 6.584 12 N -0.609 5.609 13 C 0.100 3.900 14 C -0.141 4.141 15 C 0.166 3.834 16 H 0.069 0.931 17 N -0.731 5.731 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.075 4.075 21 N -0.972 5.972 22 Si 0.974 3.026 23 H -0.273 1.273 24 H -0.301 1.301 25 H -0.279 1.279 26 C 0.111 3.889 27 H 0.040 0.960 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.056 0.944 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.946 22.953 -4.394 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.120 4.120 4 H 0.149 0.851 5 C -0.181 4.181 6 C -0.037 4.037 7 O -0.307 6.307 8 C 0.008 3.992 9 H 0.139 0.861 10 C 0.316 3.684 11 O -0.464 6.464 12 N -0.344 5.344 13 C -0.022 4.022 14 C -0.182 4.182 15 C 0.057 3.943 16 H 0.087 0.913 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.102 0.898 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.199 1.199 24 H -0.227 1.227 25 H -0.205 1.205 26 C -0.013 4.013 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.084 0.916 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.411 22.631 -4.881 23.401 hybrid contribution -0.076 -1.600 0.234 1.619 sum -3.487 21.030 -4.647 21.818 Atomic orbital electron populations 1.21691 0.93468 1.01603 1.03107 1.21841 0.98119 0.95770 1.01389 1.22613 0.90970 0.97321 1.01123 0.85103 1.23253 0.99547 0.99733 0.95579 1.23910 0.85272 0.93509 1.00996 1.88956 1.40052 1.61850 1.39815 1.22863 0.95405 0.89941 0.90957 0.86131 1.20793 0.77924 0.88849 0.80833 1.90676 1.46350 1.69237 1.40092 1.48479 1.63888 1.12323 1.09662 1.22663 1.00405 0.96395 0.82689 1.23346 0.99437 0.94720 1.00704 1.21375 0.95793 0.85382 0.91770 0.91277 1.42533 1.70344 1.14575 1.09626 1.19601 1.30936 0.97654 0.88916 0.89771 1.25584 1.01910 0.98363 1.00826 1.69833 1.46322 1.14728 1.31351 0.85199 0.77723 0.77150 0.79594 1.19911 1.22718 1.20465 1.21956 0.99241 0.82521 0.97565 0.94073 0.90705 0.91400 0.95084 0.91639 0.86421 0.91938 0.88945 0.88078 0.87817 0.88626 0.92169 0.88958 0.79699 0.94108 0.92550 0.93924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.79 71.98 0.70 -1.96 16 2 C -0.13 -3.14 4.11 30.59 0.13 -3.02 16 3 C -0.10 -1.73 2.31 -9.81 -0.02 -1.76 16 4 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 5 C -0.14 -2.07 6.00 31.89 0.19 -1.88 16 6 C 0.04 0.60 7.72 72.67 0.56 1.16 16 7 O -0.39 -10.30 10.78 -130.72 -1.41 -11.70 16 8 C 0.07 1.58 3.05 30.22 0.09 1.68 16 9 H 0.12 1.97 7.74 -2.39 -0.02 1.95 16 10 C 0.53 17.16 5.19 87.66 0.46 17.62 16 11 O -0.58 -25.35 16.92 15.22 0.26 -25.09 16 12 N -0.61 -18.24 2.22 -811.80 -1.81 -20.05 16 13 C 0.10 2.15 5.65 86.86 0.49 2.65 16 14 C -0.14 -4.08 6.77 31.99 0.22 -3.87 16 15 C 0.17 6.18 3.59 46.18 0.17 6.35 16 16 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 17 N -0.73 -35.77 5.25 -317.34 -1.67 -37.44 16 18 C -0.24 -12.72 9.98 84.03 0.84 -11.88 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 21 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 22 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.11 4.08 6.62 86.73 0.57 4.66 16 27 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.06 7.61 -2.39 -0.02 1.04 16 30 H 0.03 0.94 7.69 -2.39 -0.02 0.93 16 31 H 0.07 1.77 4.98 -2.38 -0.01 1.76 16 32 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.15 7.78 -2.39 -0.02 1.13 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.59 6.54 -2.39 -0.02 1.58 16 37 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.37 20.13 7.51 -92.71 -0.70 19.43 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.79 7.69 -2.38 -0.02 1.77 16 Total: -1.00 -74.54 338.58 2.85 -71.69 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.30 Total: 28.43 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.86 Total: 6.04 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -3.19 Total: -116.33 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.15 Total: -36.80 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -74.54 2.85 -71.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968970470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.631 kcal (2) G-P(sol) polarization free energy of solvation -74.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds