Wall clock time and date at job start Tue Mar 31 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 H 1.09002 * 110.43365 * 52.45564 * 3 2 1 5 5 C 1.54814 * 110.49125 * 289.77339 * 3 2 1 6 6 C 1.54987 * 102.09394 * 220.44023 * 5 3 2 7 7 O 1.44382 * 103.49171 * 37.01970 * 6 5 3 8 8 C 1.43742 * 106.97541 * 319.94149 * 7 6 5 9 9 H 1.09001 * 110.00581 * 267.01643 * 8 7 6 10 10 C 1.50699 * 109.87962 * 145.93494 * 8 7 6 11 11 O 1.21282 * 120.00182 * 357.17163 * 10 8 7 12 12 N 1.34778 * 119.99953 * 177.17069 * 10 8 7 13 13 C 1.46507 * 119.99917 * 180.02562 * 12 10 8 14 14 H 1.08996 * 110.91686 * 31.09380 * 13 12 10 15 15 C 1.55160 * 111.00223 * 154.99605 * 13 12 10 16 16 C 1.54327 * 102.93871 * 82.57230 * 15 13 12 17 17 N 1.47024 * 107.27511 * 22.19081 * 16 15 13 18 18 C 1.36932 * 125.65317 * 181.02063 * 17 16 15 19 19 H 1.07992 * 120.00566 * 169.01701 * 18 17 16 20 20 C 1.38815 * 119.99621 * 349.01658 * 18 17 16 21 21 N 1.31620 * 119.99804 * 165.59002 * 20 18 17 22 22 Si 1.86804 * 120.00119 * 345.59482 * 20 18 17 23 23 H 1.48489 * 109.47021 * 65.29977 * 22 20 18 24 24 H 1.48496 * 109.46861 * 305.29634 * 22 20 18 25 25 H 1.48500 * 109.46960 * 185.30088 * 22 20 18 26 26 C 1.47428 * 108.69890 * 1.28547 * 17 16 15 27 27 H 1.08997 * 109.47868 * 59.99606 * 1 2 3 28 28 H 1.09008 * 109.46688 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47043 * 299.99067 * 1 2 3 30 30 H 1.09003 * 109.47043 * 240.00933 * 2 1 3 31 31 H 1.08997 * 109.47868 * 120.00394 * 2 1 3 32 32 H 1.09001 * 110.90282 * 338.63670 * 5 3 2 33 33 H 1.09001 * 110.90724 * 102.20782 * 5 3 2 34 34 H 1.09000 * 110.62118 * 155.52304 * 6 5 3 35 35 H 1.09005 * 110.61935 * 278.52449 * 6 5 3 36 36 H 0.96999 * 120.00151 * 359.97438 * 12 10 8 37 37 H 1.08995 * 110.72380 * 324.21206 * 15 13 12 38 38 H 1.08998 * 110.86647 * 201.00179 * 15 13 12 39 39 H 1.08999 * 109.88204 * 262.77317 * 16 15 13 40 40 H 1.09002 * 109.88077 * 141.60946 * 16 15 13 41 41 H 0.96996 * 120.00271 * 354.92534 * 21 20 18 42 42 H 1.09007 * 110.36472 * 94.48672 * 26 17 16 43 43 H 1.08995 * 110.36519 * 216.80286 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 0.8099 5 6 1.7581 2.1170 -1.3647 6 6 3.0600 2.9232 -1.6035 7 8 4.0919 2.0595 -1.0802 8 6 3.5755 1.4718 0.1257 9 1 3.8655 2.0731 0.9874 10 6 4.1039 0.0688 0.2790 11 8 4.8095 -0.4110 -0.5828 12 7 3.7924 -0.6527 1.3740 13 6 4.3065 -2.0165 1.5233 14 1 5.2784 -2.1209 1.0411 15 6 4.3814 -2.4219 3.0191 16 6 2.9374 -2.8705 3.3282 17 7 2.3092 -3.2316 2.0490 18 6 1.0196 -3.6627 1.8867 19 1 0.5947 -3.7344 0.8965 20 6 0.2585 -4.0075 2.9952 21 7 -1.0454 -4.1464 2.8808 22 14 1.0846 -4.2744 4.6492 23 1 1.6678 -2.9938 5.1235 24 1 2.1620 -5.2864 4.5067 25 1 0.0807 -4.7553 5.6321 26 6 3.2995 -3.0590 0.9706 27 1 -0.3635 0.5139 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6144 1.3700 -2.1454 33 1 0.8956 2.7803 -1.2999 34 1 3.2117 3.1009 -2.6682 35 1 3.0340 3.8654 -1.0560 36 1 3.2284 -0.2688 2.0635 37 1 4.6605 -1.5682 3.6366 38 1 5.0804 -3.2456 3.1636 39 1 2.3870 -2.0530 3.7938 40 1 2.9519 -3.7354 3.9914 41 1 -1.4837 -3.9365 2.0413 42 1 3.8030 -4.0033 0.7631 43 1 2.8172 -2.6795 0.0699 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014799318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:24 Heat of formation + Delta-G solvation = -43.188921 kcal Electronic energy + Delta-G solvation = -24202.445090 eV Core-core repulsion = 20862.905068 eV Total energy + Delta-G solvation = -3339.540022 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72319 -38.78689 -37.30451 -34.90618 -33.69929 -32.11199 -30.44036 -29.77626 -29.15772 -27.85119 -24.17471 -23.68010 -22.81350 -21.46124 -20.93342 -19.93011 -19.78093 -17.60727 -17.00799 -16.75525 -16.31122 -15.40161 -15.33077 -14.89537 -14.62408 -14.24626 -14.13572 -13.55611 -13.33003 -13.17705 -12.88638 -12.68441 -12.43268 -12.04973 -11.79395 -11.61662 -11.35526 -11.27976 -11.20991 -11.03573 -11.00890 -10.86498 -10.59330 -10.41897 -10.14605 -10.06300 -9.39222 -9.31102 -9.00838 -8.83514 -8.57141 -7.03390 -6.31090 -3.22793 2.77134 3.04345 3.36931 3.47818 3.68936 3.97743 4.33884 4.59330 4.60090 4.66296 4.86382 4.95015 5.02083 5.02673 5.21270 5.31527 5.33673 5.39475 5.45931 5.52499 5.54877 5.56982 5.65909 5.82798 5.85359 5.91301 6.03409 6.06140 6.11332 6.19328 6.35716 6.41796 6.52367 6.55639 6.61095 6.64667 6.68056 6.87667 7.63096 7.72269 8.32720 8.40966 9.03442 9.54453 10.21932 11.19163 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021786 B = 0.006024 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.942268 B = 4647.168743 C = 5460.006813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.136 4.136 3 C -0.113 4.113 4 H 0.091 0.909 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.348 6.348 8 C 0.062 3.938 9 H 0.091 0.909 10 C 0.521 3.479 11 O -0.527 6.527 12 N -0.707 5.707 13 C 0.128 3.872 14 H 0.097 0.903 15 C -0.138 4.138 16 C 0.108 3.892 17 N -0.609 5.609 18 C -0.314 4.314 19 H 0.077 0.923 20 C -0.022 4.022 21 N -0.930 5.930 22 Si 1.071 2.929 23 H -0.288 1.288 24 H -0.299 1.299 25 H -0.304 1.304 26 C 0.124 3.876 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.032 0.968 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.731 14.017 -3.061 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C -0.132 4.132 4 H 0.110 0.890 5 C -0.185 4.185 6 C -0.033 4.033 7 O -0.266 6.266 8 C 0.000 4.000 9 H 0.108 0.892 10 C 0.306 3.694 11 O -0.403 6.403 12 N -0.361 5.361 13 C 0.023 3.977 14 H 0.114 0.886 15 C -0.176 4.176 16 C -0.017 4.017 17 N -0.337 5.337 18 C -0.441 4.441 19 H 0.095 0.905 20 C -0.221 4.221 21 N -0.571 5.571 22 Si 0.906 3.094 23 H -0.216 1.216 24 H -0.228 1.228 25 H -0.232 1.232 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.081 13.145 -2.250 15.593 hybrid contribution -0.227 0.594 -1.158 1.321 sum 7.854 13.739 -3.408 16.188 Atomic orbital electron populations 1.21656 0.95028 1.02661 1.00586 1.22103 0.97092 0.93601 1.04538 1.22613 0.92630 0.99191 0.98731 0.89041 1.23228 0.98259 0.99793 0.97246 1.23623 0.86581 0.93141 0.99923 1.88984 1.37665 1.61074 1.38902 1.22730 0.94192 0.92745 0.90305 0.89176 1.20216 0.80201 0.86999 0.81936 1.90693 1.37169 1.71817 1.40573 1.45975 1.52486 1.15205 1.22414 1.22175 0.97928 0.81220 0.96371 0.88555 1.22919 0.98310 1.01314 0.95071 1.22010 0.91570 0.97673 0.90459 1.44836 1.09636 1.78683 1.00528 1.20119 0.85550 1.42806 0.95639 0.90538 1.25804 0.95680 0.98629 1.01998 1.70890 1.07722 1.50459 1.28070 0.83820 0.73061 0.76098 0.76416 1.21582 1.22840 1.23226 1.22026 0.90464 0.94986 0.92770 0.93755 0.91726 0.92949 0.92005 0.88453 0.90084 0.89940 0.88737 0.92036 0.76169 0.90747 0.89967 0.93787 0.95301 0.92941 0.95028 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.79 37.16 0.36 -1.74 16 2 C -0.14 -2.02 4.15 -26.73 -0.11 -2.13 16 3 C -0.11 -1.33 3.04 -89.09 -0.27 -1.60 16 4 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 5 C -0.15 -1.54 6.03 -24.73 -0.15 -1.68 16 6 C 0.04 0.45 7.72 38.21 0.29 0.75 16 7 O -0.35 -5.06 10.74 -54.81 -0.59 -5.65 16 8 C 0.06 0.81 3.84 -27.31 -0.10 0.70 16 9 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 10 C 0.52 8.34 5.69 -10.99 -0.06 8.28 16 11 O -0.53 -10.52 16.17 -14.02 -0.23 -10.75 16 12 N -0.71 -10.52 3.39 -51.61 -0.17 -10.70 16 13 C 0.13 2.08 3.43 -65.66 -0.23 1.86 16 14 H 0.10 1.54 7.54 -51.93 -0.39 1.15 16 15 C -0.14 -2.09 6.55 -24.89 -0.16 -2.25 16 16 C 0.11 2.15 4.60 -3.06 -0.01 2.14 16 17 N -0.61 -13.93 3.32 -169.93 -0.56 -14.49 16 18 C -0.31 -8.55 10.56 -15.06 -0.16 -8.71 16 19 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 20 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 21 N -0.93 -28.41 13.70 55.49 0.76 -27.65 16 22 Si 1.07 26.04 24.53 -169.99 -4.17 21.87 16 23 H -0.29 -6.28 5.43 56.52 0.31 -5.97 16 24 H -0.30 -7.12 6.84 56.52 0.39 -6.73 16 25 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 26 C 0.12 2.48 6.95 -2.41 -0.02 2.46 16 27 H 0.04 0.57 7.63 -51.93 -0.40 0.17 16 28 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 31 H 0.10 1.61 4.80 -51.93 -0.25 1.36 16 32 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.40 5.42 7.71 -40.82 -0.31 5.11 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.04 0.90 6.78 -51.93 -0.35 0.55 16 40 H 0.03 0.63 3.83 -51.93 -0.20 0.43 16 41 H 0.26 7.90 8.73 -40.82 -0.36 7.55 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.21 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 329.16 15.07 4.96 4.96 Total: -1.00 -33.02 329.16 -7.76 -40.78 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.04 Total: 4.28 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.71 Total: -2.66 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: 0.02 Total: -52.83 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.82 Total: -16.39 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -4.17 Total: 21.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.02 -7.76 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014799318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.413 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds