Wall clock time and date at job start Tue Mar 31 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47371 * 2 1 4 4 H 1.09004 * 110.35285 * 52.85424 * 3 2 1 5 5 O 1.43644 * 110.30918 * 290.71149 * 3 2 1 6 6 C 1.43243 * 109.97123 * 216.65284 * 5 3 2 7 7 C 1.54385 * 107.58734 * 1.71477 * 6 5 3 8 8 C 1.54950 * 110.30953 * 174.99839 * 3 2 1 9 9 H 1.08995 * 111.12546 * 37.44253 * 8 3 2 10 10 C 1.50695 * 111.12552 * 273.27675 * 8 3 2 11 11 O 1.21287 * 119.99946 * 0.02562 * 10 8 3 12 12 N 1.34773 * 120.00237 * 180.02562 * 10 8 3 13 13 C 1.46501 * 120.00398 * 180.02562 * 12 10 8 14 14 H 1.08999 * 110.88399 * 328.87859 * 13 12 10 15 15 C 1.55154 * 111.00612 * 205.00217 * 13 12 10 16 16 C 1.54329 * 102.94006 * 277.42865 * 15 13 12 17 17 N 1.47020 * 107.27078 * 337.80040 * 16 15 13 18 18 C 1.36939 * 125.64873 * 178.98480 * 17 16 15 19 19 H 1.08006 * 120.00075 * 174.79105 * 18 17 16 20 20 C 1.38811 * 120.00259 * 354.79344 * 18 17 16 21 21 N 1.31620 * 119.99713 * 7.05021 * 20 18 17 22 22 Si 1.86796 * 120.00208 * 187.04900 * 20 18 17 23 23 H 1.48506 * 109.47010 * 94.98895 * 22 20 18 24 24 H 1.48499 * 109.47123 * 214.98645 * 22 20 18 25 25 H 1.48501 * 109.47179 * 334.99067 * 22 20 18 26 26 C 1.47425 * 108.70447 * 358.94984 * 17 16 15 27 27 H 1.08999 * 109.46748 * 59.99866 * 1 2 3 28 28 H 1.09006 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46984 * 299.99934 * 1 2 3 30 30 H 1.09000 * 109.46958 * 239.99511 * 2 1 3 31 31 H 1.09003 * 109.47230 * 120.00104 * 2 1 3 32 32 H 1.08998 * 109.82528 * 121.22726 * 6 5 3 33 33 H 1.09003 * 109.83085 * 242.20059 * 6 5 3 34 34 H 1.09001 * 110.84799 * 263.16427 * 7 6 5 35 35 H 1.08994 * 110.84418 * 139.54285 * 7 6 5 36 36 H 0.97000 * 119.99975 * 359.97438 * 12 10 8 37 37 H 1.09001 * 110.72465 * 35.78647 * 15 13 12 38 38 H 1.09000 * 110.72374 * 159.06437 * 15 13 12 39 39 H 1.08990 * 109.88608 * 97.22391 * 16 15 13 40 40 H 1.09006 * 109.88184 * 218.23391 * 16 15 13 41 41 H 0.96999 * 120.00221 * 179.97438 * 21 20 18 42 42 H 1.09005 * 110.36287 * 265.28683 * 26 17 16 43 43 H 1.08994 * 110.37255 * 142.96221 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5847 2.0056 0.8146 5 8 1.7571 2.0713 -1.2601 6 6 2.8322 2.9457 -1.6228 7 6 3.9117 2.8383 -0.5244 8 6 3.5842 1.4669 0.1267 9 1 4.0373 0.6483 -0.4325 10 6 4.0112 1.4359 1.5716 11 8 3.1758 1.3969 2.4500 12 7 5.3212 1.4516 1.8877 13 6 5.7363 1.4210 3.2923 14 1 5.0008 1.9167 3.9257 15 6 7.1412 2.0547 3.4710 16 6 8.0923 0.8958 3.1045 17 7 7.3433 -0.3566 3.2834 18 6 7.8249 -1.6158 3.0430 19 1 7.2233 -2.4795 3.2851 20 6 9.0863 -1.7823 2.4880 21 7 9.8745 -0.7414 2.3213 22 14 9.6652 -3.4834 1.9779 23 1 9.3910 -3.6869 0.5326 24 1 11.1241 -3.6051 2.2268 25 1 8.9407 -4.5106 2.7685 26 6 5.9883 -0.0325 3.7652 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 3.2493 2.6403 -2.5824 33 1 2.4693 3.9716 -1.6857 34 1 3.8094 3.6461 0.2003 35 1 4.9102 2.8317 -0.9613 36 1 5.9893 1.4825 1.1851 37 1 7.2754 2.8940 2.7886 38 1 7.2947 2.3676 4.5038 39 1 8.4112 0.9921 2.0668 40 1 8.9616 0.9076 3.7620 41 1 10.7561 -0.8577 1.9339 42 1 5.9488 -0.0897 4.8530 43 1 5.2564 -0.7078 3.3222 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015340175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:29 Heat of formation + Delta-G solvation = -68.735137 kcal Electronic energy + Delta-G solvation = -23183.130007 eV Core-core repulsion = 19842.482218 eV Total energy + Delta-G solvation = -3340.647789 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45201 -38.77430 -37.14205 -33.89204 -33.52005 -32.60709 -31.54454 -29.24146 -28.53473 -27.26668 -24.68619 -23.89630 -22.70215 -21.02849 -20.31228 -20.08849 -19.77739 -17.71666 -16.88767 -16.39059 -16.03559 -15.29561 -14.97803 -14.68370 -14.53544 -13.96948 -13.86241 -13.61105 -13.40011 -13.26225 -13.00158 -12.54041 -12.21330 -11.95720 -11.86149 -11.82351 -11.53026 -11.04690 -10.98332 -10.95635 -10.86489 -10.77475 -10.71200 -10.38289 -10.16039 -10.00475 -9.74495 -9.68002 -9.47122 -8.77502 -8.55180 -6.86577 -5.77710 -3.09272 2.78268 3.34426 3.36832 3.42835 3.44280 3.70667 4.30669 4.46437 4.54492 4.66712 4.93610 5.05088 5.13045 5.15520 5.28723 5.33322 5.40965 5.41991 5.44370 5.55011 5.58787 5.73530 5.73954 5.78695 5.85230 5.91423 6.01170 6.15845 6.18831 6.30051 6.32756 6.43944 6.47391 6.64560 6.91809 6.99079 7.48491 7.51186 7.75150 7.81648 8.20025 8.45039 9.17260 9.77384 10.43412 11.34567 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018805 B = 0.004406 C = 0.004152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.576117 B = 6353.376257 C = 6741.930875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.103 3.897 4 H 0.086 0.914 5 O -0.379 6.379 6 C 0.054 3.946 7 C -0.145 4.145 8 C -0.146 4.146 9 H 0.113 0.887 10 C 0.526 3.474 11 O -0.546 6.546 12 N -0.700 5.700 13 C 0.127 3.873 14 H 0.090 0.910 15 C -0.153 4.153 16 C 0.175 3.825 17 N -0.604 5.604 18 C -0.226 4.226 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.125 3.875 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.403 0.597 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 8.256 -6.163 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C 0.045 3.955 4 H 0.104 0.896 5 O -0.299 6.299 6 C -0.023 4.023 7 C -0.183 4.183 8 C -0.168 4.168 9 H 0.131 0.869 10 C 0.312 3.688 11 O -0.424 6.424 12 N -0.349 5.349 13 C 0.021 3.979 14 H 0.108 0.892 15 C -0.192 4.192 16 C 0.050 3.950 17 N -0.331 5.331 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C -0.002 4.002 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.585 8.093 -5.710 16.015 hybrid contribution 1.162 -0.883 -0.507 1.545 sum -11.423 7.211 -6.218 14.871 Atomic orbital electron populations 1.21685 0.95230 1.01407 1.02034 1.21650 0.96891 0.94470 1.02824 1.22843 0.91445 0.94775 0.86410 0.89631 1.88411 1.42441 1.60553 1.38481 1.23072 0.87115 0.94532 0.97553 1.23098 1.00722 0.96105 0.98354 1.23067 0.98513 1.00182 0.94989 0.86936 1.19992 0.82771 0.76115 0.89962 1.90679 1.51501 1.50404 1.49833 1.45836 1.06638 1.73268 1.09162 1.22154 0.96063 0.98054 0.81583 0.89207 1.23218 0.94968 0.99539 1.01491 1.21175 0.91711 0.81938 1.00190 1.44480 1.07900 1.02628 1.78049 1.19064 0.99330 0.82738 1.34338 0.90526 1.24783 0.96724 0.97441 1.01336 1.69964 1.09084 1.27909 1.49965 0.86135 0.77819 0.83548 0.78522 1.21678 1.21765 1.20648 1.21941 0.88748 0.93054 0.96445 0.92334 0.92860 0.92709 0.91430 0.90244 0.91078 0.91304 0.90019 0.89084 0.76233 0.91633 0.90959 0.93488 0.93951 0.93797 0.95508 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.85 37.16 0.37 -1.25 16 2 C -0.12 -1.49 5.66 -26.73 -0.15 -1.64 16 3 C 0.10 1.31 2.55 -25.70 -0.07 1.25 16 4 H 0.09 1.21 7.38 -51.93 -0.38 0.83 16 5 O -0.38 -4.74 10.81 -35.23 -0.38 -5.12 16 6 C 0.05 0.52 7.79 37.88 0.30 0.82 16 7 C -0.14 -1.42 6.49 -24.78 -0.16 -1.58 16 8 C -0.15 -1.80 2.90 -89.52 -0.26 -2.06 16 9 H 0.11 1.34 8.06 -51.93 -0.42 0.92 16 10 C 0.53 8.10 7.15 -10.99 -0.08 8.02 16 11 O -0.55 -9.98 15.36 5.55 0.09 -9.90 16 12 N -0.70 -10.99 5.19 -51.73 -0.27 -11.25 16 13 C 0.13 2.20 3.43 -65.78 -0.23 1.98 16 14 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 15 C -0.15 -2.63 6.55 -24.90 -0.16 -2.79 16 16 C 0.17 3.97 5.37 -3.06 -0.02 3.95 16 17 N -0.60 -14.86 3.39 -170.07 -0.58 -15.44 16 18 C -0.23 -6.19 10.27 -15.06 -0.15 -6.35 16 19 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 20 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 21 N -0.92 -26.17 10.36 55.49 0.57 -25.60 16 22 Si 0.91 21.76 29.56 -169.99 -5.02 16.74 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.13 2.62 6.93 -2.53 -0.02 2.60 16 27 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.81 8.03 -51.93 -0.42 0.40 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 6.03 8.67 -40.82 -0.35 5.67 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 1.16 7.30 -51.93 -0.38 0.78 16 40 H 0.04 1.08 7.61 -51.93 -0.40 0.69 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -30.75 344.68 -8.47 -39.23 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.35 Total: 3.48 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -0.73 Total: 2.66 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.27 Total: -52.29 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.30 Total: -15.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.75 -8.47 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015340175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.508 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds