Wall clock time and date at job start Tue Mar 31 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47106 * 2 1 4 4 C 1.52998 * 109.47328 * 239.99904 * 2 1 3 5 5 C 1.50698 * 109.47102 * 59.99622 * 4 2 1 6 6 O 1.21280 * 119.99745 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99753 * 179.97438 * 5 4 2 8 8 C 1.47425 * 125.65138 * 0.02907 * 7 5 4 9 9 C 1.54908 * 104.92961 * 204.15299 * 8 7 5 10 10 C 1.55154 * 101.58289 * 322.93718 * 9 8 7 11 11 H 1.08997 * 110.72022 * 277.13434 * 10 9 8 12 12 N 1.46497 * 110.72021 * 153.86481 * 10 9 8 13 13 C 1.36935 * 120.00023 * 86.45627 * 12 10 9 14 14 H 1.07998 * 120.00224 * 359.97438 * 13 12 10 15 15 C 1.38813 * 119.99817 * 180.02562 * 13 12 10 16 16 N 1.31620 * 120.00358 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99999 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47152 * 89.99577 * 17 15 13 19 19 H 1.48496 * 109.47231 * 209.99954 * 17 15 13 20 20 H 1.48502 * 109.47097 * 329.99972 * 17 15 13 21 21 C 1.47290 * 125.79121 * 180.02562 * 7 5 4 22 22 C 1.53002 * 109.46896 * 119.99542 * 2 1 3 23 23 C 1.52999 * 117.50090 * 13.75000 * 22 2 1 24 24 C 1.52997 * 117.50116 * 305.08847 * 22 2 1 25 25 H 1.08999 * 109.47174 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47201 * 300.00177 * 1 2 3 27 27 H 1.09000 * 109.47198 * 60.00207 * 1 2 3 28 28 H 0.96703 * 113.99976 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46936 * 299.99647 * 4 2 1 30 30 H 1.09000 * 109.47095 * 180.02562 * 4 2 1 31 31 H 1.09002 * 110.36696 * 85.25946 * 8 7 5 32 32 H 1.08995 * 110.36608 * 323.04783 * 8 7 5 33 33 H 1.09008 * 111.00494 * 81.01141 * 9 8 7 34 34 H 1.09000 * 111.00857 * 204.82205 * 9 8 7 35 35 H 0.97001 * 120.00178 * 266.45146 * 12 10 9 36 36 H 0.97000 * 120.00067 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.85762 * 59.50172 * 21 7 5 38 38 H 1.08995 * 110.00297 * 298.43119 * 21 7 5 39 39 H 1.09005 * 115.54840 * 159.41923 * 22 2 1 40 40 H 1.09000 * 117.49719 * 359.97438 * 23 22 2 41 41 H 1.09004 * 117.50231 * 145.01849 * 23 22 2 42 42 H 1.09003 * 117.49897 * 214.97834 * 24 22 2 43 43 H 1.08998 * 117.50004 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5376 -0.0109 -2.4797 6 8 0.8407 0.9754 -2.3684 7 7 1.8637 -0.4711 -3.7037 8 6 2.6996 -1.6531 -3.9828 9 6 3.2771 -1.4080 -5.3991 10 6 2.0789 -0.7257 -6.1104 11 1 1.3726 -1.4709 -6.4764 12 7 2.5445 0.1303 -7.2043 13 6 2.7550 -0.4020 -8.4482 14 1 2.5782 -1.4529 -8.6229 15 6 3.1967 0.4092 -9.4845 16 7 3.4127 1.6899 -9.2716 17 14 3.4846 -0.3171 -11.1814 18 1 2.2335 -0.2283 -11.9766 19 1 4.5621 0.4400 -11.8676 20 1 3.8869 -1.7404 -11.0489 21 6 1.4458 0.1208 -4.9860 22 6 2.0399 -0.7212 1.2493 23 6 1.0326 -1.5532 2.0455 24 6 1.5399 -0.2224 2.6065 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9703 1.4236 -0.0004 29 1 1.6767 -1.7489 -1.2491 30 1 3.1300 -0.7216 -1.2489 31 1 2.0923 -2.5582 -3.9721 32 1 3.5051 -1.7289 -3.2525 33 1 4.1390 -0.7417 -5.3597 34 1 3.5356 -2.3493 -5.8840 35 1 2.7036 1.0743 -7.0474 36 1 3.7210 2.2568 -9.9959 37 1 1.8004 1.1494 -5.0521 38 1 0.3594 0.0972 -5.0711 39 1 3.0647 -1.0888 1.1946 40 1 0.0064 -1.5864 1.6794 41 1 1.3946 -2.4680 2.5148 42 1 2.2355 -0.2623 3.4448 43 1 0.8480 0.6197 2.6095 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018736308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:39 Heat of formation + Delta-G solvation = -40.889695 kcal Electronic energy + Delta-G solvation = -22616.560677 eV Core-core repulsion = 19277.120357 eV Total energy + Delta-G solvation = -3339.440320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.30620 -38.88439 -37.16188 -35.50469 -34.12219 -31.97013 -31.32731 -29.54483 -28.59224 -27.14121 -24.44237 -23.39624 -22.70864 -22.55186 -20.12559 -19.76597 -19.04833 -17.42296 -17.26858 -16.57682 -16.08277 -15.92124 -15.17349 -14.69703 -14.48259 -14.40222 -13.64320 -13.50789 -13.24768 -13.16387 -12.78847 -12.60077 -12.40326 -12.01557 -11.88414 -11.63708 -11.63130 -11.30481 -11.18350 -10.99983 -10.85228 -10.75483 -10.71947 -10.43707 -10.34857 -10.10778 -10.05589 -9.77430 -9.36809 -8.98108 -8.34300 -7.05741 -5.83252 -3.14088 2.84734 3.12373 3.39918 3.44378 3.45753 3.46889 4.23331 4.31349 4.47594 4.53348 4.67879 4.71061 4.83868 4.95479 5.02732 5.07553 5.29766 5.32862 5.37822 5.39666 5.52966 5.56384 5.58513 5.63202 5.73076 5.75332 5.82409 5.89480 5.94677 6.00885 6.13455 6.25866 6.35719 6.41325 6.58384 6.61426 6.89680 7.63678 7.66649 7.78773 8.33913 8.42640 9.45477 10.00038 10.34650 11.38947 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047076 B = 0.003024 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.646304 B = 9257.711215 C = 9474.256397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.181 3.819 3 O -0.537 6.537 4 C -0.161 4.161 5 C 0.525 3.475 6 O -0.523 6.523 7 N -0.616 5.616 8 C 0.099 3.901 9 C -0.155 4.155 10 C 0.172 3.828 11 H 0.063 0.937 12 N -0.716 5.716 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.010 4.010 16 N -0.930 5.930 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.102 3.898 22 C -0.189 4.189 23 C -0.178 4.178 24 C -0.165 4.165 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.368 0.632 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -8.842 21.675 23.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.140 3.860 3 O -0.341 6.341 4 C -0.201 4.201 5 C 0.313 3.687 6 O -0.400 6.400 7 N -0.351 5.351 8 C -0.025 4.025 9 C -0.196 4.196 10 C 0.060 3.940 11 H 0.081 0.919 12 N -0.357 5.357 13 C -0.376 4.376 14 H 0.090 0.910 15 C -0.207 4.207 16 N -0.577 5.577 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.021 4.021 22 C -0.207 4.207 23 C -0.215 4.215 24 C -0.202 4.202 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.214 0.786 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.221 0.779 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.760 -8.224 21.625 23.300 hybrid contribution 1.135 -0.409 -0.923 1.519 sum -1.625 -8.632 20.702 22.489 Atomic orbital electron populations 1.22107 0.92472 1.01833 1.04800 1.20274 0.95105 0.81628 0.89008 1.86718 1.25736 1.24949 1.96713 1.22372 1.02584 1.01425 0.93732 1.20027 0.80930 0.84663 0.83103 1.90679 1.37789 1.25867 1.85643 1.48604 1.51363 1.29615 1.05558 1.22371 0.93594 0.87970 0.98553 1.23558 1.00955 1.02097 0.92976 1.21174 0.93064 0.92414 0.87348 0.91902 1.42368 1.79018 1.08425 1.05883 1.19205 1.38028 0.93901 0.86458 0.90973 1.24783 1.01972 0.95620 0.98322 1.69667 1.51906 1.04060 1.32098 0.86170 0.77512 0.77978 0.84360 1.21614 1.21734 1.20697 1.22295 0.99271 0.98415 0.82128 1.23061 0.99429 1.04759 0.93489 1.23135 0.99659 0.95059 1.03651 1.22875 1.03735 0.97952 0.95647 0.91779 0.92300 0.88763 0.78556 0.88336 0.88989 0.91778 0.91571 0.90668 0.90614 0.77928 0.93332 0.91197 0.91764 0.87777 0.87898 0.88893 0.88962 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 7.18 37.16 0.27 -1.54 16 2 C 0.18 1.94 0.80 -90.62 -0.07 1.87 16 3 O -0.54 -6.82 11.85 -53.50 -0.63 -7.46 16 4 C -0.16 -1.69 3.96 -27.89 -0.11 -1.80 16 5 C 0.52 7.91 7.41 -10.99 -0.08 7.83 16 6 O -0.52 -9.83 13.29 -12.71 -0.17 -10.00 16 7 N -0.62 -9.37 3.34 -170.31 -0.57 -9.94 16 8 C 0.10 1.24 6.68 -2.53 -0.02 1.22 16 9 C -0.15 -2.47 6.77 -24.58 -0.17 -2.63 16 10 C 0.17 3.27 3.59 -66.10 -0.24 3.03 16 11 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 12 N -0.72 -17.47 5.25 -51.66 -0.27 -17.74 16 13 C -0.24 -6.58 9.98 -15.06 -0.15 -6.73 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 17 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.10 1.83 6.64 -2.92 -0.02 1.81 16 22 C -0.19 -1.55 5.32 -90.62 -0.48 -2.04 16 23 C -0.18 -1.31 9.66 -26.69 -0.26 -1.56 16 24 C -0.17 -1.31 9.85 -26.70 -0.26 -1.57 16 25 H 0.06 0.61 6.74 -51.93 -0.35 0.26 16 26 H 0.06 0.65 6.96 -51.92 -0.36 0.29 16 27 H 0.09 1.41 5.51 -51.93 -0.29 1.12 16 28 H 0.37 3.40 9.05 45.56 0.41 3.81 16 29 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.80 7.85 -51.93 -0.41 0.40 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.68 7.47 -51.93 -0.39 0.29 16 33 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.39 10.18 7.51 -40.82 -0.31 9.88 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.07 1.39 7.69 -51.93 -0.40 1.00 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.76 5.89 -51.93 -0.31 0.45 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.88 7.28 -51.93 -0.38 0.50 16 LS Contribution 342.34 15.07 5.16 5.16 Total: -1.00 -32.39 342.34 -8.59 -40.98 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.12 Total: 11.64 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.69 Total: -2.51 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.11 Total: -54.70 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.80 Total: -17.45 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.39 -8.59 -40.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018736308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.091 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds