Wall clock time and date at job start Tue Mar 31 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47064 * 2 1 4 4 H 1.08998 * 110.43537 * 51.36378 * 3 2 1 5 5 C 1.54804 * 110.48673 * 288.67364 * 3 2 1 6 6 C 1.54995 * 102.09359 * 220.44447 * 5 3 2 7 7 O 1.44383 * 103.48871 * 37.02419 * 6 5 3 8 8 C 1.43744 * 106.97379 * 319.94017 * 7 6 5 9 9 H 1.09006 * 110.00229 * 267.01467 * 8 7 6 10 10 C 1.50698 * 109.87487 * 145.93732 * 8 7 6 11 11 O 1.21284 * 120.00531 * 342.63264 * 10 8 7 12 12 N 1.34780 * 119.99998 * 162.90400 * 10 8 7 13 13 C 1.47428 * 125.64265 * 4.44412 * 12 10 8 14 14 C 1.54915 * 104.82874 * 204.08501 * 13 12 10 15 15 C 1.55150 * 101.58357 * 322.99432 * 14 13 12 16 16 H 1.09003 * 110.72125 * 276.95698 * 15 14 13 17 17 N 1.46501 * 110.72198 * 153.86097 * 15 14 13 18 18 C 1.36934 * 119.99823 * 86.45168 * 17 15 14 19 19 H 1.08004 * 120.00276 * 0.02562 * 18 17 15 20 20 C 1.38809 * 120.00314 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00315 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99757 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46896 * 90.00049 * 22 20 18 24 24 H 1.48498 * 109.46956 * 209.99720 * 22 20 18 25 25 H 1.48492 * 109.46823 * 329.99856 * 22 20 18 26 26 C 1.47015 * 125.65304 * 184.13135 * 12 10 8 27 27 H 1.09000 * 109.47480 * 299.99882 * 1 2 3 28 28 H 1.08997 * 109.47087 * 59.99920 * 1 2 3 29 29 H 1.09001 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47001 * 239.99925 * 2 1 3 31 31 H 1.08997 * 109.47087 * 120.00080 * 2 1 3 32 32 H 1.09003 * 110.91310 * 338.64159 * 5 3 2 33 33 H 1.09004 * 110.91056 * 102.21291 * 5 3 2 34 34 H 1.09003 * 110.62091 * 155.52408 * 6 5 3 35 35 H 1.08997 * 110.61696 * 278.36461 * 6 5 3 36 36 H 1.08989 * 110.36979 * 322.92557 * 13 12 10 37 37 H 1.08998 * 110.36676 * 85.25629 * 13 12 10 38 38 H 1.09003 * 111.00035 * 81.06645 * 14 13 12 39 39 H 1.08998 * 111.00243 * 204.87665 * 14 13 12 40 40 H 0.96998 * 120.00449 * 266.45223 * 17 15 14 41 41 H 0.96999 * 119.99603 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.88227 * 298.40165 * 26 12 10 43 43 H 1.09003 * 109.88141 * 59.56058 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5656 2.0139 0.7978 5 6 1.7828 2.1081 -1.3738 6 6 3.0890 2.9128 -1.5943 7 8 4.1111 2.0524 -1.0469 8 6 3.5730 1.4725 0.1532 9 1 3.8475 2.0794 1.0161 10 6 4.0984 0.0706 0.3250 11 8 4.5916 -0.5120 -0.6175 12 7 4.0153 -0.5380 1.5247 13 6 3.3556 0.0119 2.7231 14 6 4.0387 -0.7037 3.9152 15 6 4.2527 -2.1293 3.3417 16 1 3.3469 -2.7268 3.4455 17 7 5.3841 -2.7881 3.9991 18 6 5.1912 -3.4760 5.1674 19 1 4.2050 -3.5332 5.6039 20 6 6.2632 -4.0998 5.7907 21 7 6.0779 -4.7605 6.9139 22 14 7.9692 -4.0003 5.0361 23 1 8.6760 -2.8067 5.5661 24 1 8.7358 -5.2240 5.3827 25 1 7.8518 -3.8912 3.5599 26 6 4.5617 -1.8627 1.8533 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6531 1.3562 -2.1522 33 1 0.9193 2.7718 -1.3290 34 1 3.2599 3.0836 -2.6573 35 1 3.0520 3.8597 -1.0557 36 1 3.5160 1.0881 2.7842 37 1 2.2893 -0.2134 2.7061 38 1 4.9915 -0.2336 4.1590 39 1 3.3826 -0.7263 4.7853 40 1 6.2698 -2.7371 3.6070 41 1 6.8270 -5.1967 7.3492 42 1 4.0885 -2.6233 1.2324 43 1 5.6399 -1.8690 1.6935 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018990431.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:56 Heat of formation + Delta-G solvation = -60.223770 kcal Electronic energy + Delta-G solvation = -23310.811999 eV Core-core repulsion = 19970.533291 eV Total energy + Delta-G solvation = -3340.278708 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89995 -38.91838 -37.15810 -35.07422 -34.19207 -31.73603 -30.65015 -30.10158 -29.54412 -27.83806 -24.48613 -23.47518 -22.79931 -22.67643 -21.06685 -20.18380 -18.93814 -17.79919 -17.28864 -16.81465 -16.40968 -15.84000 -15.09733 -14.77881 -14.62109 -14.37265 -14.02221 -13.73587 -13.59666 -13.32553 -12.91648 -12.74104 -12.55942 -12.26278 -12.05757 -11.95125 -11.85122 -11.52360 -11.46134 -11.36676 -10.95705 -10.95245 -10.83647 -10.67206 -10.53679 -10.22186 -10.11028 -9.66752 -9.44218 -9.01587 -8.51676 -7.37887 -5.84608 -3.22228 2.58527 2.85081 3.35011 3.39024 3.43349 3.78930 4.08714 4.31225 4.38170 4.53436 4.66158 4.85533 4.87489 4.91921 5.01460 5.06993 5.14834 5.16791 5.19963 5.33321 5.39689 5.41132 5.48357 5.51238 5.56496 5.62136 5.74352 5.79646 5.84291 5.86767 5.92966 6.08679 6.10822 6.23093 6.37397 6.48742 6.58633 6.75608 7.58423 7.89180 8.23706 8.33858 9.10549 9.83203 10.01205 11.33040 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.004002 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.743972 B = 6995.238678 C = 7460.983464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C -0.107 4.107 4 H 0.093 0.907 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.349 6.349 8 C 0.066 3.934 9 H 0.090 0.910 10 C 0.533 3.467 11 O -0.527 6.527 12 N -0.614 5.614 13 C 0.094 3.906 14 C -0.153 4.153 15 C 0.177 3.823 16 H 0.073 0.927 17 N -0.740 5.740 18 C -0.250 4.250 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.930 5.930 22 Si 0.882 3.118 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C 0.100 3.900 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.363 0.637 41 H 0.261 0.739 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.877 16.410 -13.845 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.127 4.127 4 H 0.111 0.889 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.267 6.267 8 C 0.004 3.996 9 H 0.108 0.892 10 C 0.321 3.679 11 O -0.402 6.402 12 N -0.350 5.350 13 C -0.029 4.029 14 C -0.194 4.194 15 C 0.066 3.934 16 H 0.091 0.909 17 N -0.382 5.382 18 C -0.379 4.379 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.577 5.577 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.202 1.202 26 C -0.023 4.023 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.197 0.803 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.463 15.947 -14.311 24.301 hybrid contribution 1.108 0.149 -0.221 1.139 sum -10.355 16.096 -14.532 24.031 Atomic orbital electron populations 1.21735 0.95081 1.01975 1.01645 1.21940 0.96652 0.94805 1.03985 1.22527 0.92946 0.98392 0.98787 0.88881 1.23242 0.98465 0.99912 0.96934 1.23615 0.86566 0.93219 0.99854 1.88995 1.37314 1.61460 1.38915 1.22717 0.93769 0.92754 0.90344 0.89228 1.19862 0.79083 0.87406 0.81553 1.90711 1.44762 1.65948 1.38794 1.48456 1.56484 1.19757 1.10276 1.22516 0.97018 0.98321 0.85049 1.23523 1.01137 0.98520 0.96230 1.21144 0.92538 0.91844 0.87851 0.90939 1.42716 1.05194 1.63066 1.27256 1.19021 0.96746 1.24969 0.97177 0.88966 1.24660 0.97560 0.99505 0.96951 1.69697 1.30936 1.38584 1.18491 0.86586 0.85808 0.77441 0.78935 1.20969 1.21581 1.20202 1.22289 0.99253 0.83194 0.97556 0.92600 0.92813 0.92439 0.91201 0.90029 0.90016 0.89859 0.88626 0.91895 0.91225 0.91088 0.90616 0.89981 0.80304 0.92906 0.91257 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.80 37.16 0.36 -0.80 16 2 C -0.14 -1.38 4.17 -26.73 -0.11 -1.49 16 3 C -0.11 -0.96 2.89 -89.10 -0.26 -1.22 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -1.15 6.08 -24.73 -0.15 -1.30 16 6 C 0.04 0.39 7.72 38.21 0.29 0.68 16 7 O -0.35 -4.75 10.79 -54.16 -0.58 -5.33 16 8 C 0.07 0.79 3.19 -27.31 -0.09 0.70 16 9 H 0.09 0.92 7.09 -51.93 -0.37 0.56 16 10 C 0.53 8.32 5.15 -10.98 -0.06 8.26 16 11 O -0.53 -10.44 16.94 -13.37 -0.23 -10.67 16 12 N -0.61 -8.89 2.49 -170.52 -0.43 -9.32 16 13 C 0.09 1.10 5.93 -2.52 -0.01 1.08 16 14 C -0.15 -2.28 6.77 -24.58 -0.17 -2.45 16 15 C 0.18 3.16 3.58 -66.09 -0.24 2.92 16 16 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 17 N -0.74 -16.75 5.06 -51.65 -0.26 -17.01 16 18 C -0.25 -6.73 10.46 -15.06 -0.16 -6.89 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.21 16 20 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 21 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 22 Si 0.88 21.81 27.74 -169.99 -4.71 17.09 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 26 C 0.10 1.67 6.63 -3.06 -0.02 1.65 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 7.67 -51.93 -0.40 -0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.87 7.71 -51.93 -0.40 0.47 16 31 H 0.08 0.91 4.21 -51.93 -0.22 0.69 16 32 H 0.08 0.71 7.75 -51.93 -0.40 0.30 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.67 6.96 -51.94 -0.36 0.31 16 37 H 0.07 0.71 6.90 -51.93 -0.36 0.35 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.36 8.28 5.37 -40.82 -0.22 8.06 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -33.35 334.70 -8.03 -41.38 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.94 Total: 5.21 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -0.70 Total: 1.33 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.09 Total: -54.05 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.81 Total: -16.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.35 -8.03 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018990431.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.841 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds