Wall clock time and date at job start Tue Mar 31 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47143 * 2 1 4 4 H 1.09000 * 109.99254 * 53.91667 * 3 2 1 5 5 C 1.54106 * 109.87790 * 174.99940 * 3 2 1 6 6 C 1.54810 * 104.18526 * 121.45619 * 5 3 2 7 7 C 1.54991 * 102.09350 * 20.88072 * 6 5 3 8 8 H 1.08999 * 110.62208 * 81.63734 * 7 6 5 9 9 C 1.50705 * 110.61357 * 204.47713 * 7 6 5 10 10 O 1.21282 * 119.99932 * 115.00371 * 9 7 6 11 11 N 1.34780 * 120.00065 * 294.99487 * 9 7 6 12 12 C 1.46497 * 119.99674 * 180.02562 * 11 9 7 13 13 H 1.09000 * 112.85427 * 334.66634 * 12 11 9 14 14 C 1.53781 * 113.61173 * 105.87011 * 12 11 9 15 15 C 1.54052 * 86.98847 * 89.15942 * 14 12 11 16 16 H 1.09006 * 113.68196 * 270.87003 * 15 14 12 17 17 N 1.46493 * 113.62025 * 139.98210 * 15 14 12 18 18 C 1.36936 * 120.00436 * 107.50536 * 17 15 14 19 19 H 1.07997 * 119.99643 * 359.97438 * 18 17 15 20 20 C 1.38819 * 120.00145 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99750 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99892 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47344 * 90.00029 * 22 20 18 24 24 H 1.48506 * 109.47063 * 210.00358 * 22 20 18 25 25 H 1.48508 * 109.47384 * 329.99974 * 22 20 18 26 26 C 1.53780 * 87.07678 * 25.42868 * 15 14 12 27 27 O 1.43745 * 109.87879 * 292.82773 * 3 2 1 28 28 H 1.08994 * 109.47069 * 300.00281 * 1 2 3 29 29 H 1.09006 * 109.46755 * 60.00109 * 1 2 3 30 30 H 1.08999 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47527 * 240.00169 * 2 1 3 32 32 H 1.09000 * 109.47450 * 119.99876 * 2 1 3 33 33 H 1.09000 * 110.48246 * 240.13228 * 5 3 2 34 34 H 1.08999 * 110.48882 * 2.77782 * 5 3 2 35 35 H 1.09005 * 110.90592 * 139.08047 * 6 5 3 36 36 H 1.09001 * 110.90204 * 262.64524 * 6 5 3 37 37 H 0.96996 * 119.99752 * 0.02562 * 11 9 7 38 38 H 1.09004 * 113.61057 * 203.65809 * 14 12 11 39 39 H 1.09003 * 113.61861 * 334.55906 * 14 12 11 40 40 H 0.97003 * 119.99854 * 287.49464 * 17 15 14 41 41 H 0.96997 * 119.99472 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.61167 * 220.02365 * 26 15 14 43 43 H 1.08997 * 113.61322 * 89.12394 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9950 0.8278 5 6 3.5758 1.4553 0.1263 6 6 4.0545 2.2041 -1.1412 7 6 2.7842 2.9909 -1.5527 8 1 2.6931 3.9060 -0.9676 9 6 2.8090 3.3055 -3.0264 10 8 1.9790 2.8185 -3.7645 11 7 3.7535 4.1282 -3.5240 12 6 3.7773 4.4344 -4.9564 13 1 3.3160 3.6556 -5.5635 14 6 3.2822 5.8512 -5.2917 15 6 4.7405 6.3150 -5.1141 16 1 4.9873 6.6018 -4.0918 17 7 5.1644 7.3101 -6.1021 18 6 5.3387 8.6157 -5.7277 19 1 5.1631 8.9119 -4.7041 20 6 5.7409 9.5584 -6.6640 21 7 5.9553 9.1972 -7.9113 22 14 5.9779 11.3395 -6.1534 23 1 7.3804 11.5452 -5.7107 24 1 5.6877 12.2281 -7.3074 25 1 5.0539 11.6614 -5.0362 26 6 5.1578 4.8780 -5.4686 27 8 1.7085 2.0781 -1.2459 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8802 1.9924 1.0246 34 1 3.9661 0.4376 0.1385 35 1 4.8736 2.8836 -0.9055 36 1 4.3469 1.5010 -1.9211 37 1 4.4175 4.5175 -2.9337 38 1 2.9125 5.9545 -6.3119 39 1 2.5982 6.2620 -4.5490 40 1 5.3219 7.0440 -7.0215 41 1 6.2360 9.8561 -8.5655 42 1 5.9872 4.5037 -4.8685 43 1 5.3000 4.7157 -6.5370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020207733.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:34 Heat of formation + Delta-G solvation = -82.417914 kcal Electronic energy + Delta-G solvation = -22122.439845 eV Core-core repulsion = 18781.198726 eV Total energy + Delta-G solvation = -3341.241119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54117 -40.33743 -38.95541 -35.78411 -34.62201 -34.20325 -32.96214 -31.80009 -29.58002 -26.60741 -26.46484 -25.39054 -23.75335 -22.97090 -21.82997 -21.73762 -20.39722 -19.17713 -18.38922 -17.59427 -17.27738 -16.95299 -16.49478 -16.03577 -15.77370 -15.52364 -15.31593 -14.62993 -14.48132 -14.42580 -14.22876 -13.96161 -13.54778 -13.43883 -13.32068 -12.94618 -12.80252 -12.68736 -12.59853 -12.43200 -12.16316 -11.96664 -11.83657 -11.75036 -11.70828 -11.46552 -11.21906 -10.94233 -10.83814 -10.58310 -10.06719 -8.98594 -7.94288 -5.22784 1.48589 1.49786 1.50862 1.58228 1.84830 2.57185 2.99135 3.37132 3.46475 3.63371 3.69458 3.82904 3.88995 3.94669 3.96853 4.14617 4.20339 4.32154 4.33116 4.33797 4.40239 4.62618 4.71818 4.79030 4.90052 4.90742 4.91078 4.92608 5.03596 5.07712 5.12878 5.17893 5.19708 5.24227 5.27307 5.42131 5.51467 5.68444 5.91627 6.27755 6.53931 7.20642 7.33966 8.10682 8.32803 9.29028 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037200 B = 0.002789 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.502714 B =10036.608167 C =10230.447149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.062 3.938 4 H 0.081 0.919 5 C -0.143 4.143 6 C -0.139 4.139 7 C 0.058 3.942 8 H 0.120 0.880 9 C 0.516 3.484 10 O -0.577 6.577 11 N -0.689 5.689 12 C 0.133 3.867 13 H 0.084 0.916 14 C -0.176 4.176 15 C 0.155 3.845 16 H 0.087 0.913 17 N -0.727 5.727 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.972 3.028 23 H -0.285 1.285 24 H -0.299 1.299 25 H -0.269 1.269 26 C -0.139 4.139 27 O -0.380 6.380 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.417 0.583 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.374 0.626 41 H 0.250 0.750 42 H 0.092 0.908 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.004 -17.911 20.892 27.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.005 3.995 4 H 0.099 0.901 5 C -0.180 4.180 6 C -0.177 4.177 7 C -0.002 4.002 8 H 0.138 0.862 9 C 0.303 3.697 10 O -0.456 6.456 11 N -0.342 5.342 12 C 0.027 3.973 13 H 0.103 0.897 14 C -0.218 4.218 15 C 0.045 3.955 16 H 0.105 0.895 17 N -0.365 5.365 18 C -0.375 4.375 19 H 0.098 0.902 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.802 3.198 23 H -0.212 1.212 24 H -0.226 1.226 25 H -0.194 1.194 26 C -0.179 4.179 27 O -0.299 6.299 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.089 0.911 37 H 0.255 0.745 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.206 0.794 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.769 -18.130 20.366 27.526 hybrid contribution 0.244 1.276 -0.565 1.417 sum -3.525 -16.854 19.801 26.240 Atomic orbital electron populations 1.21727 0.95907 1.01836 1.01436 1.21755 0.96449 0.94587 1.03056 1.23154 0.95945 0.94429 0.85990 0.90076 1.23035 0.93475 1.02934 0.98605 1.23145 0.96321 0.99765 0.98438 1.23123 0.89492 0.96458 0.91153 0.86238 1.20866 0.80363 0.77795 0.90679 1.90699 1.39974 1.53284 1.61627 1.45440 1.32203 1.47850 1.08711 1.21498 0.98049 0.96030 0.81723 0.89743 1.24228 1.00392 0.96318 1.00832 1.22015 0.92073 0.87805 0.93586 0.89477 1.42609 1.80087 1.05053 1.08707 1.19714 1.36460 0.86244 0.95044 0.90236 1.25588 1.03289 1.02356 0.95785 1.69818 1.54925 1.34482 1.02876 0.85155 0.77920 0.80024 0.76747 1.21187 1.22624 1.19434 1.23651 0.95924 0.96154 1.02138 1.89022 1.42548 1.57239 1.41088 0.91916 0.94671 0.91916 0.92565 0.88167 0.87763 0.88988 0.86256 0.91149 0.74523 0.91393 0.92716 0.79423 0.94088 0.88984 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.83 71.98 0.71 -1.71 16 2 C -0.12 -1.71 5.42 30.59 0.17 -1.55 16 3 C 0.06 0.94 3.41 30.97 0.11 1.04 16 4 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 5 C -0.14 -1.36 6.64 31.59 0.21 -1.15 16 6 C -0.14 -1.71 6.57 31.89 0.21 -1.50 16 7 C 0.06 1.14 3.76 30.53 0.11 1.25 16 8 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 9 C 0.52 14.17 7.21 87.66 0.63 14.80 16 10 O -0.58 -22.18 16.18 15.20 0.25 -21.93 16 11 N -0.69 -16.20 5.25 -440.03 -2.31 -18.51 16 12 C 0.13 3.90 4.30 45.52 0.20 4.10 16 13 H 0.08 2.74 7.50 -2.39 -0.02 2.72 16 14 C -0.18 -6.17 7.70 31.21 0.24 -5.93 16 15 C 0.16 5.66 4.37 45.61 0.20 5.86 16 16 H 0.09 2.94 8.10 -2.38 -0.02 2.92 16 17 N -0.73 -35.53 5.40 -320.02 -1.73 -37.26 16 18 C -0.24 -13.11 9.97 84.04 0.84 -12.27 16 19 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 20 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 21 N -0.97 -58.99 13.06 21.65 0.28 -58.70 16 22 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C -0.14 -4.07 7.57 31.12 0.24 -3.84 16 27 O -0.38 -9.33 10.12 -130.75 -1.32 -10.65 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.03 0.76 7.91 -2.38 -0.02 0.74 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.72 7.70 -2.39 -0.02 0.71 16 35 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 1.07 8.05 -2.39 -0.02 1.05 16 37 H 0.42 6.97 8.70 -92.71 -0.81 6.16 16 38 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.37 19.80 7.92 -92.71 -0.73 19.06 16 41 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 42 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 2.68 8.12 -2.39 -0.02 2.66 16 Total: -1.00 -74.17 352.83 0.97 -73.20 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.54 Total: 31.26 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 4.32 Total: -4.85 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -3.76 Total: -114.47 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.08 Total: -32.58 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -74.17 0.97 -73.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020207733.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.220 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds