Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47119 * 2 1 4 4 H 1.08998 * 110.67776 * 307.97048 * 3 2 1 5 5 C 1.54993 * 110.62233 * 185.00008 * 3 2 1 6 6 C 1.54812 * 102.09717 * 204.47823 * 5 3 2 7 7 C 1.54100 * 104.18408 * 20.88001 * 6 5 3 8 8 H 1.08996 * 109.88160 * 242.45512 * 7 6 5 9 9 C 1.50701 * 109.87759 * 121.45267 * 7 6 5 10 10 O 1.21285 * 120.00409 * 245.00145 * 9 7 6 11 11 N 1.34781 * 119.99913 * 64.99672 * 9 7 6 12 12 C 1.46495 * 119.99912 * 179.97438 * 11 9 7 13 13 H 1.08991 * 112.85340 * 23.80671 * 12 11 9 14 14 C 1.53784 * 113.61420 * 155.00714 * 12 11 9 15 15 C 1.53777 * 87.08493 * 89.11268 * 14 12 11 16 16 H 1.08996 * 113.61678 * 270.79993 * 15 14 12 17 17 N 1.46501 * 113.61261 * 139.98252 * 15 14 12 18 18 C 1.36935 * 119.99801 * 156.53262 * 17 15 14 19 19 H 1.08003 * 120.00239 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99745 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00372 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99982 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99472 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00079 * 22 20 18 26 26 C 1.53777 * 87.17155 * 25.39077 * 15 14 12 27 27 O 1.43745 * 107.29575 * 2.03128 * 7 6 5 28 28 H 1.08998 * 109.47285 * 299.99412 * 1 2 3 29 29 H 1.08997 * 109.47508 * 60.00061 * 1 2 3 30 30 H 1.09009 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46896 * 240.00720 * 2 1 3 32 32 H 1.08996 * 109.47369 * 120.00711 * 2 1 3 33 33 H 1.08998 * 110.90584 * 86.28035 * 5 3 2 34 34 H 1.08997 * 110.90906 * 322.68230 * 5 3 2 35 35 H 1.08998 * 110.48725 * 262.20745 * 6 5 3 36 36 H 1.09002 * 110.48654 * 139.55683 * 6 5 3 37 37 H 0.97003 * 119.99694 * 0.02562 * 11 9 7 38 38 H 1.09003 * 113.60870 * 334.56309 * 14 12 11 39 39 H 1.09005 * 113.61499 * 203.66799 * 14 12 11 40 40 H 0.97000 * 119.99781 * 336.53043 * 17 15 14 41 41 H 0.97000 * 119.99954 * 359.97438 * 21 20 18 42 42 H 1.09006 * 113.61468 * 89.15943 * 26 15 14 43 43 H 1.08996 * 113.61618 * 220.05942 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0145 -0.8039 5 6 3.5843 1.4754 -0.1264 6 6 3.9332 2.8409 0.5142 7 6 2.7072 3.1729 1.3868 8 1 2.2332 4.0864 1.0278 9 6 3.1317 3.3461 2.8223 10 8 2.7400 2.5704 3.6684 11 7 3.9468 4.3630 3.1660 12 6 4.3591 4.5317 4.5616 13 1 4.3085 3.6049 5.1329 14 6 5.6907 5.2836 4.7240 15 6 4.8644 6.5801 4.7556 16 1 4.6971 7.0154 3.7704 17 7 5.3441 7.5579 5.7355 18 6 5.0582 8.8871 5.5726 19 1 4.4795 9.2147 4.7216 20 6 5.5131 9.8136 6.5008 21 7 6.2188 9.4145 7.5377 22 14 5.1226 11.6268 6.2791 23 1 6.1966 12.2704 5.4804 24 1 3.8253 11.7709 5.5708 25 1 5.0356 12.2808 7.6094 26 6 3.6880 5.7281 5.2605 27 8 1.7931 2.0689 1.2772 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8896 1.4472 -1.1724 34 1 4.0379 0.6565 0.4319 35 1 4.0700 3.5999 -0.2561 36 1 4.8283 2.7556 1.1305 37 1 4.2599 4.9835 2.4894 38 1 6.3455 5.2041 3.8563 39 1 6.2019 5.0685 5.6624 40 1 5.8641 7.2636 6.4996 41 1 6.4206 8.4728 7.6535 42 1 3.6506 5.6349 6.3460 43 1 2.7284 6.0071 4.8254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020207734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -59.668495 kcal Electronic energy + Delta-G solvation = -22172.217591 eV Core-core repulsion = 18831.962961 eV Total energy + Delta-G solvation = -3340.254630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61924 -39.28213 -37.71160 -34.32527 -33.94913 -33.03900 -32.12853 -29.80655 -28.74876 -25.22766 -24.98333 -23.96428 -22.50220 -22.15129 -21.32147 -20.67282 -19.05146 -17.67676 -17.27673 -16.87629 -16.38355 -15.73685 -15.16927 -14.84210 -14.30328 -14.18153 -14.09963 -13.88315 -13.67552 -13.50247 -13.32129 -13.06740 -12.33928 -12.09939 -12.03597 -11.99492 -11.81190 -11.55222 -11.34210 -11.14302 -10.97133 -10.82641 -10.58164 -10.32495 -10.28581 -10.11433 -9.95955 -9.51731 -9.18256 -8.94999 -8.82377 -7.07489 -6.14760 -3.15012 2.56833 2.84581 3.49216 3.54057 3.68240 3.69155 4.11375 4.31431 4.47746 4.57983 4.64586 4.75041 4.86506 4.90483 4.97379 5.00312 5.11738 5.21058 5.31392 5.34563 5.37527 5.46702 5.47364 5.57989 5.64488 5.67978 5.77909 5.79604 5.84732 6.00957 6.02561 6.11994 6.21040 6.41644 6.51675 6.59132 6.59441 6.98844 7.53483 7.76779 8.24412 8.71159 9.17534 10.03898 10.18700 11.33456 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.002784 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.212167 B =10056.071537 C =10173.214785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.072 3.928 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.061 3.939 8 H 0.095 0.905 9 C 0.513 3.487 10 O -0.523 6.523 11 N -0.706 5.706 12 C 0.118 3.882 13 H 0.096 0.904 14 C -0.160 4.160 15 C 0.172 3.828 16 H 0.074 0.926 17 N -0.724 5.724 18 C -0.336 4.336 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.943 5.943 22 Si 1.083 2.917 23 H -0.295 1.295 24 H -0.295 1.295 25 H -0.287 1.287 26 C -0.176 4.176 27 O -0.341 6.341 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.090 0.910 40 H 0.369 0.631 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.699 -16.810 -18.933 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.015 3.985 4 H 0.091 0.909 5 C -0.187 4.187 6 C -0.186 4.186 7 C -0.001 4.001 8 H 0.112 0.888 9 C 0.298 3.702 10 O -0.397 6.397 11 N -0.358 5.358 12 C 0.013 3.987 13 H 0.114 0.886 14 C -0.199 4.199 15 C 0.060 3.940 16 H 0.092 0.908 17 N -0.364 5.364 18 C -0.467 4.467 19 H 0.083 0.917 20 C -0.242 4.242 21 N -0.588 5.588 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.221 1.221 25 H -0.213 1.213 26 C -0.218 4.218 27 O -0.259 6.259 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.234 0.766 38 H 0.084 0.916 39 H 0.108 0.892 40 H 0.202 0.798 41 H 0.067 0.933 42 H 0.103 0.897 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.065 -15.801 -17.660 24.461 hybrid contribution 0.204 -1.170 -0.917 1.500 sum -5.860 -16.971 -18.577 25.835 Atomic orbital electron populations 1.21743 0.95147 1.01682 1.02354 1.21547 0.96883 0.94145 1.02859 1.23298 0.94167 0.94654 0.86409 0.90920 1.23187 0.96169 0.97514 1.01848 1.22947 0.97932 0.98375 0.99357 1.22600 0.91470 0.92711 0.93296 0.88761 1.20405 0.78722 0.80953 0.90110 1.90713 1.54030 1.43559 1.51437 1.45625 1.49857 1.30153 1.10169 1.21832 0.96502 0.98888 0.81527 0.88580 1.23848 0.95749 0.98074 1.02260 1.21554 0.91623 0.87203 0.93581 0.90811 1.42412 1.63806 1.03771 1.26386 1.20111 1.32441 0.84297 1.09884 0.91670 1.25807 0.98747 1.05140 0.94537 1.70855 1.40868 1.17181 1.29849 0.83195 0.75254 0.74591 0.75601 1.22278 1.22128 1.21333 1.24326 1.00356 0.96372 1.00778 1.89030 1.56210 1.44173 1.36528 0.91831 0.92890 0.92680 0.90625 0.90798 0.89793 0.90122 0.89411 0.89752 0.76569 0.91644 0.89177 0.79759 0.93313 0.89713 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.86 37.15 0.37 -0.81 16 2 C -0.12 -0.91 5.69 -26.74 -0.15 -1.06 16 3 C 0.07 0.62 3.29 -25.68 -0.08 0.54 16 4 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 5 C -0.15 -1.08 6.59 -24.72 -0.16 -1.24 16 6 C -0.15 -1.14 6.61 -25.20 -0.17 -1.31 16 7 C 0.06 0.66 3.84 -27.31 -0.10 0.55 16 8 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 9 C 0.51 7.34 6.95 -10.98 -0.08 7.27 16 10 O -0.52 -9.89 16.13 -14.02 -0.23 -10.11 16 11 N -0.71 -9.11 5.23 -52.93 -0.28 -9.39 16 12 C 0.12 1.80 4.33 -67.03 -0.29 1.51 16 13 H 0.10 1.57 7.46 -51.93 -0.39 1.18 16 14 C -0.16 -2.49 7.58 -25.92 -0.20 -2.69 16 15 C 0.17 3.31 4.34 -67.12 -0.29 3.02 16 16 H 0.07 1.39 8.11 -51.93 -0.42 0.97 16 17 N -0.72 -17.86 5.41 -52.64 -0.28 -18.14 16 18 C -0.34 -9.36 9.97 -15.06 -0.15 -9.51 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.04 -1.29 5.50 -17.43 -0.10 -1.38 16 21 N -0.94 -29.02 13.70 55.49 0.76 -28.26 16 22 Si 1.08 25.78 29.92 -169.99 -5.09 20.70 16 23 H -0.30 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.18 -3.16 7.69 -25.83 -0.20 -3.36 16 27 O -0.34 -4.32 10.30 -54.81 -0.56 -4.89 16 28 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.63 8.06 -51.93 -0.42 0.21 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.69 7.69 -51.93 -0.40 0.29 16 37 H 0.40 4.13 8.70 -40.82 -0.36 3.77 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.44 8.11 -51.93 -0.42 1.01 16 40 H 0.37 9.37 6.74 -40.82 -0.28 9.10 16 41 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 42 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -34.60 351.34 -9.22 -43.82 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -7.23 Total: 9.46 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.60 Total: -8.47 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.20 Total: -55.79 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.79 Total: -15.00 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.60 -9.22 -43.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020207734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.851 kcal (2) G-P(sol) polarization free energy of solvation -34.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds