Wall clock time and date at job start Tue Mar 31 2020 06:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47119 * 2 1 4 4 H 1.08998 * 110.67776 * 307.97048 * 3 2 1 5 5 C 1.54993 * 110.62233 * 185.00008 * 3 2 1 6 6 C 1.54812 * 102.09717 * 204.47823 * 5 3 2 7 7 C 1.54100 * 104.18408 * 20.88001 * 6 5 3 8 8 H 1.08996 * 109.88160 * 242.45512 * 7 6 5 9 9 C 1.50701 * 109.87759 * 121.45267 * 7 6 5 10 10 O 1.21285 * 120.00409 * 245.00145 * 9 7 6 11 11 N 1.34781 * 119.99913 * 64.99672 * 9 7 6 12 12 C 1.46495 * 119.99912 * 179.97438 * 11 9 7 13 13 H 1.08991 * 112.85340 * 23.80671 * 12 11 9 14 14 C 1.53784 * 113.61420 * 155.00714 * 12 11 9 15 15 C 1.53777 * 87.08493 * 89.11268 * 14 12 11 16 16 H 1.08996 * 113.61678 * 270.79993 * 15 14 12 17 17 N 1.46501 * 113.61261 * 139.98252 * 15 14 12 18 18 C 1.36935 * 119.99801 * 156.53262 * 17 15 14 19 19 H 1.08003 * 120.00239 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99745 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00372 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99955 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99982 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99472 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00079 * 22 20 18 26 26 C 1.53777 * 87.17155 * 25.39077 * 15 14 12 27 27 O 1.43745 * 107.29575 * 2.03128 * 7 6 5 28 28 H 1.08998 * 109.47285 * 299.99412 * 1 2 3 29 29 H 1.08997 * 109.47508 * 60.00061 * 1 2 3 30 30 H 1.09009 * 109.47301 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46896 * 240.00720 * 2 1 3 32 32 H 1.08996 * 109.47369 * 120.00711 * 2 1 3 33 33 H 1.08998 * 110.90584 * 86.28035 * 5 3 2 34 34 H 1.08997 * 110.90906 * 322.68230 * 5 3 2 35 35 H 1.08998 * 110.48725 * 262.20745 * 6 5 3 36 36 H 1.09002 * 110.48654 * 139.55683 * 6 5 3 37 37 H 0.97003 * 119.99694 * 0.02562 * 11 9 7 38 38 H 1.09003 * 113.60870 * 334.56309 * 14 12 11 39 39 H 1.09005 * 113.61499 * 203.66799 * 14 12 11 40 40 H 0.97000 * 119.99781 * 336.53043 * 17 15 14 41 41 H 0.97000 * 119.99954 * 359.97438 * 21 20 18 42 42 H 1.09006 * 113.61468 * 89.15943 * 26 15 14 43 43 H 1.08996 * 113.61618 * 220.05942 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5767 2.0145 -0.8039 5 6 3.5843 1.4754 -0.1264 6 6 3.9332 2.8409 0.5142 7 6 2.7072 3.1729 1.3868 8 1 2.2332 4.0864 1.0278 9 6 3.1317 3.3461 2.8223 10 8 2.7400 2.5704 3.6684 11 7 3.9468 4.3630 3.1660 12 6 4.3591 4.5317 4.5616 13 1 4.3085 3.6049 5.1329 14 6 5.6907 5.2836 4.7240 15 6 4.8644 6.5801 4.7556 16 1 4.6971 7.0154 3.7704 17 7 5.3441 7.5579 5.7355 18 6 5.0582 8.8871 5.5726 19 1 4.4795 9.2147 4.7216 20 6 5.5131 9.8136 6.5008 21 7 6.2188 9.4145 7.5377 22 14 5.1226 11.6268 6.2791 23 1 6.1966 12.2704 5.4804 24 1 3.8253 11.7709 5.5708 25 1 5.0356 12.2808 7.6094 26 6 3.6880 5.7281 5.2605 27 8 1.7931 2.0689 1.2772 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.8896 1.4472 -1.1724 34 1 4.0379 0.6565 0.4319 35 1 4.0700 3.5999 -0.2561 36 1 4.8283 2.7556 1.1305 37 1 4.2599 4.9835 2.4894 38 1 6.3455 5.2041 3.8563 39 1 6.2019 5.0685 5.6624 40 1 5.8641 7.2636 6.4996 41 1 6.4206 8.4728 7.6535 42 1 3.6506 5.6349 6.3460 43 1 2.7284 6.0071 4.8254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020207734.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:38 Heat of formation + Delta-G solvation = -83.249583 kcal Electronic energy + Delta-G solvation = -22173.240144 eV Core-core repulsion = 18831.962961 eV Total energy + Delta-G solvation = -3341.277182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63212 -40.38411 -38.98969 -36.12897 -34.70240 -34.29957 -32.98482 -31.59608 -29.61904 -26.66465 -26.30447 -25.37098 -23.99566 -22.93173 -21.95827 -21.71840 -20.46626 -19.49199 -18.46801 -17.65214 -17.44078 -16.99115 -16.64033 -15.98445 -15.86730 -15.40804 -15.34632 -14.80893 -14.69610 -14.56256 -14.38589 -13.93058 -13.73296 -13.45254 -13.28110 -12.87377 -12.69575 -12.65910 -12.46739 -12.40196 -11.97724 -11.88339 -11.86487 -11.76817 -11.63750 -11.55320 -11.12294 -11.10350 -10.86248 -10.52198 -10.13012 -9.11037 -8.39463 -5.33789 1.47018 1.58806 1.69471 1.83247 1.83430 2.71728 2.93052 3.37141 3.42703 3.58414 3.59625 3.72478 3.78197 3.84977 3.86040 4.16082 4.17496 4.20311 4.23312 4.32690 4.38224 4.57022 4.60992 4.77244 4.78592 4.81767 4.85933 4.90908 5.00391 5.02197 5.06475 5.08491 5.13500 5.15090 5.21748 5.40415 5.56045 5.62396 5.87634 6.48471 6.49700 7.08578 7.16120 7.98914 8.10819 9.12365 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037767 B = 0.002784 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.212167 B =10056.071537 C =10173.214785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.064 3.936 4 H 0.091 0.909 5 C -0.146 4.146 6 C -0.142 4.142 7 C 0.061 3.939 8 H 0.117 0.883 9 C 0.510 3.490 10 O -0.577 6.577 11 N -0.692 5.692 12 C 0.135 3.865 13 H 0.087 0.913 14 C -0.140 4.140 15 C 0.159 3.841 16 H 0.084 0.916 17 N -0.740 5.740 18 C -0.332 4.332 19 H 0.070 0.930 20 C -0.107 4.107 21 N -0.977 5.977 22 Si 1.130 2.870 23 H -0.282 1.282 24 H -0.273 1.273 25 H -0.296 1.296 26 C -0.175 4.175 27 O -0.379 6.379 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.417 0.583 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.361 0.639 41 H 0.244 0.756 42 H 0.067 0.933 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.569 -16.736 -22.193 28.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.008 3.992 4 H 0.109 0.891 5 C -0.183 4.183 6 C -0.180 4.180 7 C 0.000 4.000 8 H 0.135 0.865 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.345 5.345 12 C 0.029 3.971 13 H 0.105 0.895 14 C -0.179 4.179 15 C 0.050 3.950 16 H 0.102 0.898 17 N -0.379 5.379 18 C -0.464 4.464 19 H 0.088 0.912 20 C -0.298 4.298 21 N -0.625 5.625 22 Si 0.954 3.046 23 H -0.209 1.209 24 H -0.199 1.199 25 H -0.223 1.223 26 C -0.217 4.217 27 O -0.299 6.299 28 H 0.055 0.945 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.087 0.913 35 H 0.139 0.861 36 H 0.098 0.902 37 H 0.254 0.746 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.193 0.807 41 H 0.055 0.945 42 H 0.085 0.915 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.940 -15.754 -21.000 26.916 hybrid contribution 0.093 -1.291 0.057 1.296 sum -5.847 -17.045 -20.943 27.629 Atomic orbital electron populations 1.21734 0.95396 1.02051 1.01657 1.21596 0.96700 0.94081 1.03113 1.23574 0.95477 0.94835 0.85327 0.89078 1.23206 0.94874 0.96814 1.03426 1.23009 0.95971 0.99598 0.99448 1.22758 0.92953 0.93391 0.90924 0.86518 1.21208 0.77660 0.79983 0.91447 1.90690 1.56010 1.45515 1.53302 1.45482 1.49369 1.30240 1.09411 1.21505 0.95627 0.97338 0.82678 0.89515 1.23649 0.95845 0.95059 1.03344 1.21895 0.92920 0.87451 0.92780 0.89845 1.42622 1.64147 1.03799 1.27370 1.20470 1.30901 0.85762 1.09259 0.91234 1.27209 0.98998 1.09204 0.94395 1.70965 1.43377 1.16565 1.31606 0.82595 0.76336 0.70207 0.75414 1.20870 1.19862 1.22287 1.24201 0.99821 0.97663 1.00040 1.89009 1.57015 1.45042 1.38801 0.94485 0.91529 0.91848 0.87957 0.92863 0.86788 0.91348 0.86110 0.90249 0.74610 0.88959 0.89520 0.80706 0.94510 0.91462 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.86 71.98 0.71 -1.51 16 2 C -0.12 -1.67 5.69 30.59 0.17 -1.49 16 3 C 0.06 0.97 3.29 31.27 0.10 1.08 16 4 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.15 -1.67 6.59 31.89 0.21 -1.46 16 6 C -0.14 -1.72 6.61 31.58 0.21 -1.51 16 7 C 0.06 1.20 3.84 30.22 0.12 1.31 16 8 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 9 C 0.51 14.13 6.95 87.66 0.61 14.74 16 10 O -0.58 -22.18 16.13 15.67 0.25 -21.93 16 11 N -0.69 -16.65 5.23 -439.76 -2.30 -18.95 16 12 C 0.14 4.01 4.33 45.58 0.20 4.20 16 13 H 0.09 2.83 7.46 -2.39 -0.02 2.81 16 14 C -0.14 -4.13 7.58 31.12 0.24 -3.90 16 15 C 0.16 5.95 4.34 45.51 0.20 6.15 16 16 H 0.08 2.96 8.11 -2.39 -0.02 2.94 16 17 N -0.74 -36.52 5.41 -320.46 -1.73 -38.25 16 18 C -0.33 -18.38 9.97 84.03 0.84 -17.54 16 19 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 20 C -0.11 -6.18 5.50 84.86 0.47 -5.71 16 21 N -0.98 -61.15 13.70 21.65 0.30 -60.85 16 22 Si 1.13 51.57 29.92 68.60 2.05 53.62 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 C -0.18 -6.27 7.69 31.18 0.24 -6.03 16 27 O -0.38 -9.32 10.30 -130.26 -1.34 -10.66 16 28 H 0.04 0.73 8.06 -2.39 -0.02 0.71 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 31 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.95 8.06 -2.39 -0.02 0.93 16 35 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.08 1.06 7.69 -2.39 -0.02 1.04 16 37 H 0.42 7.34 8.70 -92.71 -0.81 6.54 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.68 8.11 -2.38 -0.02 2.66 16 40 H 0.36 18.71 6.74 -92.71 -0.62 18.08 16 41 H 0.24 15.22 6.77 -92.71 -0.63 14.59 16 42 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -77.00 351.34 1.24 -75.76 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -0.29 Total: 32.93 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.31 Total: -11.67 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -3.74 Total: -118.05 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.09 Total: -32.60 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -77.00 1.24 -75.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020207734.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.490 kcal (2) G-P(sol) polarization free energy of solvation -77.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds