Wall clock time and date at job start Tue Mar 31 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47159 * 2 1 4 4 H 1.09002 * 109.89629 * 54.47984 * 3 2 1 5 5 C 1.54383 * 109.83288 * 175.40890 * 3 2 1 6 6 C 1.55412 * 102.30998 * 140.79706 * 5 3 2 7 7 C 1.54946 * 100.89237 * 325.99402 * 6 5 3 8 8 H 1.09000 * 110.31043 * 277.35271 * 7 6 5 9 9 C 1.50702 * 110.30859 * 155.28708 * 7 6 5 10 10 O 1.21288 * 120.00005 * 246.39055 * 9 7 6 11 11 N 1.34776 * 120.00401 * 66.38922 * 9 7 6 12 12 C 1.46497 * 120.00499 * 180.02562 * 11 9 7 13 13 H 1.08997 * 112.84944 * 23.80153 * 12 11 9 14 14 C 1.53776 * 113.61632 * 154.99929 * 12 11 9 15 15 C 1.53784 * 87.08293 * 89.19922 * 14 12 11 16 16 H 1.09001 * 113.61507 * 270.80079 * 15 14 12 17 17 N 1.46498 * 113.61507 * 139.97795 * 15 14 12 18 18 C 1.36943 * 119.99752 * 156.25408 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.53781 * 87.17096 * 25.39168 * 15 14 12 27 27 O 1.43240 * 109.83075 * 293.54673 * 3 2 1 28 28 H 1.09004 * 109.46931 * 60.00089 * 1 2 3 29 29 H 1.08996 * 109.47283 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47206 * 300.00459 * 1 2 3 31 31 H 1.08996 * 109.47247 * 240.00008 * 2 1 3 32 32 H 1.08999 * 109.46959 * 119.99419 * 2 1 3 33 33 H 1.08995 * 110.85148 * 259.06309 * 5 3 2 34 34 H 1.09004 * 110.84245 * 22.47782 * 5 3 2 35 35 H 1.09000 * 111.21120 * 208.06266 * 6 5 3 36 36 H 1.08999 * 111.08441 * 83.86706 * 6 5 3 37 37 H 0.97001 * 119.99454 * 0.02562 * 11 9 7 38 38 H 1.09000 * 113.61546 * 334.65121 * 14 12 11 39 39 H 1.08999 * 113.61714 * 203.74789 * 14 12 11 40 40 H 0.97001 * 120.00384 * 336.53764 * 17 15 14 41 41 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 42 42 H 1.08995 * 113.61680 * 89.16196 * 26 15 14 43 43 H 1.09006 * 113.61326 * 220.06146 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6023 1.9908 0.8342 5 6 3.5794 1.4538 0.1162 6 6 3.9760 2.6068 -0.8474 7 6 2.8863 2.4635 -1.9395 8 1 3.1676 1.6914 -2.6557 9 6 2.6767 3.7786 -2.6450 10 8 1.6229 4.3678 -2.5291 11 7 3.6602 4.3002 -3.4047 12 6 3.4567 5.5788 -4.0900 13 1 2.6953 6.1973 -3.6148 14 6 4.7635 6.3321 -4.3895 15 6 4.8074 5.5663 -5.7223 16 1 5.3295 4.6115 -5.6603 17 7 5.2495 6.3839 -6.8547 18 6 5.7996 5.7863 -7.9572 19 1 5.9033 4.7119 -7.9938 20 6 6.2238 6.5614 -9.0278 21 7 6.0978 7.8709 -8.9829 22 14 6.9734 5.7462 -10.5320 23 1 5.9009 5.4278 -11.5086 24 1 7.9546 6.6687 -11.1577 25 1 7.6606 4.4942 -10.1257 26 6 3.2786 5.4407 -5.6130 27 8 1.6945 2.0801 -1.2353 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8898 1.6765 1.1371 34 1 4.0005 0.5053 -0.2172 35 1 4.9715 2.4490 -1.2625 36 1 3.9088 3.5743 -0.3499 37 1 4.5029 3.8288 -3.4976 38 1 5.5791 6.0777 -3.7126 39 1 4.6303 7.4074 -4.5080 40 1 5.1565 7.3489 -6.8218 41 1 6.3940 8.4125 -9.7311 42 1 2.7387 6.2718 -6.0667 43 1 2.8972 4.4676 -5.9225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020207735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:42 Heat of formation + Delta-G solvation = -60.455925 kcal Electronic energy + Delta-G solvation = -22125.549111 eV Core-core repulsion = 18785.260336 eV Total energy + Delta-G solvation = -3340.288775 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57159 -39.27151 -37.66438 -34.08046 -33.83551 -32.88801 -32.11878 -30.00090 -28.80015 -25.13999 -25.07134 -24.16424 -22.37663 -22.12073 -21.40124 -20.35969 -18.96636 -17.91250 -17.16713 -16.72356 -16.07110 -15.78392 -14.98795 -14.68284 -14.60923 -14.38531 -13.86665 -13.74259 -13.52074 -13.42114 -13.20491 -12.68488 -12.33645 -12.16947 -12.04835 -11.85941 -11.78858 -11.64463 -11.29766 -11.19796 -11.01880 -10.91839 -10.78420 -10.32792 -10.24693 -10.09173 -9.91455 -9.58143 -9.43411 -8.92483 -8.78360 -6.99610 -5.81303 -3.10401 2.59631 2.87762 3.40918 3.45970 3.47649 3.71411 4.06786 4.31090 4.47569 4.56312 4.69848 4.75310 4.83695 4.94604 5.04926 5.07816 5.13153 5.21126 5.33338 5.41361 5.43275 5.47458 5.49133 5.56186 5.66236 5.69164 5.85448 5.91443 5.93172 6.06400 6.12948 6.23452 6.31719 6.49042 6.61579 6.69033 6.72225 7.08074 7.58733 7.65852 8.29010 8.37131 9.48332 10.05751 10.40060 11.41021 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.002828 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.875453 B = 9897.161882 C =10107.518377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.076 3.924 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.064 3.936 8 H 0.096 0.904 9 C 0.513 3.487 10 O -0.524 6.524 11 N -0.704 5.704 12 C 0.116 3.884 13 H 0.096 0.904 14 C -0.158 4.158 15 C 0.167 3.833 16 H 0.073 0.927 17 N -0.713 5.713 18 C -0.245 4.245 19 H 0.071 0.929 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C -0.176 4.176 27 O -0.345 6.345 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.086 0.914 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.300 -14.269 20.475 25.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.183 4.183 7 C 0.003 3.997 8 H 0.114 0.886 9 C 0.298 3.702 10 O -0.398 6.398 11 N -0.356 5.356 12 C 0.011 3.989 13 H 0.114 0.886 14 C -0.198 4.198 15 C 0.054 3.946 16 H 0.090 0.910 17 N -0.351 5.351 18 C -0.376 4.376 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.218 4.218 27 O -0.263 6.263 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.191 -13.899 20.330 25.168 hybrid contribution 0.967 -0.365 -0.905 1.374 sum -4.224 -14.265 19.425 24.467 Atomic orbital electron populations 1.21716 0.95160 1.01377 1.02560 1.21906 0.97200 0.95519 1.02358 1.22887 0.94177 0.93631 0.87493 0.90047 1.23208 0.95309 0.99255 1.00967 1.23263 0.98926 1.00263 0.95894 1.22822 0.86599 0.94854 0.95461 0.88650 1.20378 0.84182 0.86542 0.79139 1.90717 1.25927 1.61330 1.61868 1.45619 1.17294 1.23460 1.49264 1.21859 0.99147 0.84247 0.93658 0.88643 1.23836 0.95675 1.00846 0.99409 1.21619 0.91807 0.94338 0.86788 0.90954 1.42404 1.72213 1.05864 1.14581 1.19284 1.32445 0.91784 0.94103 0.91128 1.24775 1.01924 0.95450 0.98734 1.69661 1.52918 1.03304 1.32070 0.86184 0.78666 0.78118 0.83170 1.21662 1.21747 1.20746 1.24339 1.02167 1.01895 0.93430 1.88576 1.27330 1.77698 1.32738 0.91764 0.92934 0.92870 0.91407 0.91042 0.89645 0.89966 0.88841 0.89679 0.76611 0.91742 0.88993 0.78002 0.93416 0.89543 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.82 37.16 0.37 -0.85 16 2 C -0.13 -0.97 5.50 -26.73 -0.15 -1.12 16 3 C 0.08 0.66 3.52 -26.00 -0.09 0.57 16 4 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 5 C -0.15 -0.94 6.55 -24.73 -0.16 -1.11 16 6 C -0.15 -1.09 6.57 -24.42 -0.16 -1.25 16 7 C 0.06 0.68 3.86 -26.86 -0.10 0.58 16 8 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.51 7.27 7.18 -10.98 -0.08 7.19 16 10 O -0.52 -9.87 16.15 -13.79 -0.22 -10.09 16 11 N -0.70 -8.97 5.26 -52.93 -0.28 -9.24 16 12 C 0.12 1.76 4.33 -67.03 -0.29 1.47 16 13 H 0.10 1.55 7.46 -51.93 -0.39 1.17 16 14 C -0.16 -2.45 7.58 -25.92 -0.20 -2.65 16 15 C 0.17 3.15 4.35 -67.12 -0.29 2.86 16 16 H 0.07 1.32 8.11 -51.93 -0.42 0.90 16 17 N -0.71 -17.48 5.41 -52.63 -0.28 -17.76 16 18 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.18 -3.12 7.69 -25.82 -0.20 -3.32 16 27 O -0.35 -4.33 9.88 -54.57 -0.54 -4.87 16 28 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.42 7.85 -51.93 -0.41 0.02 16 35 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.40 4.01 8.70 -40.82 -0.36 3.66 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 40 H 0.39 10.06 7.91 -40.82 -0.32 9.74 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -33.40 352.82 -9.25 -42.64 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -7.34 Total: 8.99 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.60 Total: -4.92 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: 0.16 Total: -54.16 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.76 Total: -14.97 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.40 -9.25 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020207735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.813 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds