Wall clock time and date at job start Tue Mar 31 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47290 * 2 1 4 4 H 1.09002 * 109.89300 * 305.92673 * 3 2 1 5 5 C 1.54383 * 109.83053 * 184.99804 * 3 2 1 6 6 C 1.55304 * 102.24838 * 219.12876 * 5 3 2 7 7 C 1.54938 * 100.94573 * 34.13249 * 6 5 3 8 8 H 1.09008 * 110.31125 * 82.57014 * 7 6 5 9 9 C 1.50696 * 110.31340 * 204.63791 * 7 6 5 10 10 O 1.21276 * 120.00341 * 114.99814 * 9 7 6 11 11 N 1.34780 * 120.00150 * 295.00683 * 9 7 6 12 12 C 1.46500 * 119.99927 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85076 * 336.18663 * 12 11 9 14 14 C 1.54051 * 113.69607 * 107.46377 * 12 11 9 15 15 C 1.53786 * 86.98423 * 139.98455 * 14 12 11 16 16 H 1.08999 * 113.61284 * 219.97824 * 15 14 12 17 17 N 1.46506 * 113.61071 * 89.16307 * 15 14 12 18 18 C 1.36931 * 119.99939 * 105.86267 * 17 15 14 19 19 H 1.08000 * 120.00644 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99715 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 179.72150 * 20 18 17 23 23 H 1.48500 * 109.46781 * 90.00854 * 22 20 18 24 24 H 1.48496 * 109.47225 * 210.00413 * 22 20 18 25 25 H 1.48494 * 109.47296 * 330.00424 * 22 20 18 26 26 C 1.53778 * 87.17467 * 334.57247 * 15 14 12 27 27 O 1.43232 * 109.83132 * 66.86295 * 3 2 1 28 28 H 1.08999 * 109.47091 * 60.00546 * 1 2 3 29 29 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47208 * 300.00053 * 1 2 3 31 31 H 1.09002 * 109.47406 * 239.99536 * 2 1 3 32 32 H 1.09006 * 109.46800 * 120.00058 * 2 1 3 33 33 H 1.09003 * 110.84670 * 100.93766 * 5 3 2 34 34 H 1.08999 * 111.02354 * 337.39829 * 5 3 2 35 35 H 1.09008 * 111.12440 * 276.20950 * 6 5 3 36 36 H 1.09003 * 111.12544 * 152.05615 * 6 5 3 37 37 H 0.97005 * 119.99783 * 359.97438 * 11 9 7 38 38 H 1.09000 * 113.61438 * 25.48398 * 14 12 11 39 39 H 1.08997 * 113.69655 * 254.50163 * 14 12 11 40 40 H 0.97000 * 119.99307 * 285.86061 * 17 15 14 41 41 H 0.97000 * 120.00330 * 179.97438 * 21 20 18 42 42 H 1.08996 * 113.61908 * 140.02474 * 26 15 14 43 43 H 1.09004 * 113.61191 * 270.92766 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9926 -0.8300 5 6 3.5786 1.4540 -0.1265 6 6 3.9797 2.6054 0.8354 7 6 2.8993 2.4589 1.9362 8 1 3.1871 1.6855 2.6484 9 6 2.6944 3.7723 2.6462 10 8 1.6306 4.3483 2.5608 11 7 3.6935 4.3069 3.3759 12 6 3.4945 5.5840 4.0656 13 1 2.7120 6.1924 3.6124 14 6 3.3628 5.4480 5.5945 15 6 4.2171 6.7224 5.6999 16 1 4.9488 6.6919 6.5072 17 7 3.4306 7.9584 5.6913 18 6 3.2575 8.6679 6.8496 19 1 3.7004 8.3162 7.7697 20 6 2.5128 9.8393 6.8412 21 7 1.9726 10.2678 5.7202 22 14 2.2702 10.8031 8.4230 23 1 3.3660 11.7942 8.5716 24 1 0.9656 11.5109 8.3762 25 1 2.2861 9.8704 9.5783 26 6 4.8002 6.3537 4.3256 27 8 1.7029 2.0771 1.2390 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8821 1.6791 -1.1490 34 1 4.0052 0.5066 0.2032 35 1 3.9076 3.5739 0.3404 36 1 4.9787 2.4476 1.2419 37 1 4.5444 3.8461 3.4444 38 1 3.8508 4.5606 5.9975 39 1 2.3435 5.5742 5.9593 40 1 3.0326 8.2741 4.8650 41 1 1.4519 11.0861 5.7144 42 1 4.9406 7.2105 3.6667 43 1 5.6806 5.7134 4.3824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020207736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:45 Heat of formation + Delta-G solvation = -59.918779 kcal Electronic energy + Delta-G solvation = -22175.201843 eV Core-core repulsion = 18834.936360 eV Total energy + Delta-G solvation = -3340.265483 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.49018 -39.16201 -37.66462 -34.06101 -33.79503 -32.85296 -32.13882 -29.83273 -28.78330 -25.10215 -25.07199 -23.95506 -22.66997 -22.14820 -21.24173 -20.21290 -18.79110 -17.74892 -17.33106 -16.74119 -15.93803 -15.86213 -14.86976 -14.66334 -14.59392 -14.35089 -13.93856 -13.60217 -13.39496 -13.23535 -13.07213 -12.72068 -12.26763 -12.12961 -12.04839 -11.94544 -11.75348 -11.63349 -11.27461 -11.16615 -10.98740 -10.86901 -10.77348 -10.26075 -10.13513 -10.03949 -9.83067 -9.69378 -9.29080 -8.90272 -8.67639 -6.99231 -5.77689 -3.07824 2.70822 2.97764 3.44120 3.49125 3.51385 3.77473 4.10095 4.33543 4.52889 4.57481 4.71931 4.79001 4.86706 4.98851 5.07876 5.12381 5.15491 5.26448 5.34272 5.40475 5.42717 5.48975 5.50626 5.59382 5.69240 5.71621 5.88413 5.95944 6.00560 6.09271 6.10328 6.22734 6.37905 6.61089 6.73225 6.76394 6.81467 7.05979 7.67675 7.71061 8.39900 8.40660 9.51161 10.07530 10.41477 11.44539 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.002887 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.250850 B = 9695.020979 C =10083.106888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.082 0.918 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.064 3.936 8 H 0.093 0.907 9 C 0.507 3.493 10 O -0.517 6.517 11 N -0.716 5.716 12 C 0.126 3.874 13 H 0.113 0.887 14 C -0.184 4.184 15 C 0.172 3.828 16 H 0.067 0.933 17 N -0.706 5.706 18 C -0.245 4.245 19 H 0.073 0.927 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.163 4.163 27 O -0.345 6.345 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.395 0.605 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.386 0.614 41 H 0.257 0.743 42 H 0.073 0.927 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -21.800 -12.342 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.002 3.998 8 H 0.111 0.889 9 C 0.291 3.709 10 O -0.391 6.391 11 N -0.368 5.368 12 C 0.022 3.978 13 H 0.131 0.869 14 C -0.227 4.227 15 C 0.058 3.942 16 H 0.085 0.915 17 N -0.345 5.345 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.203 4.203 27 O -0.263 6.263 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.228 0.772 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.910 -21.225 -12.166 25.168 hybrid contribution 0.282 0.286 0.486 0.630 sum 6.192 -20.939 -11.680 24.763 Atomic orbital electron populations 1.21719 0.95133 1.01350 1.02653 1.21901 0.97231 0.95525 1.02253 1.22888 0.94181 0.93666 0.87515 0.90002 1.23187 0.95379 0.99167 1.00982 1.23246 0.98863 1.00343 0.95911 1.22837 0.86508 0.95018 0.95388 0.88905 1.20422 0.84649 0.86468 0.79318 1.90756 1.25595 1.61778 1.60975 1.46044 1.15551 1.24116 1.51046 1.22702 0.99222 0.83406 0.92435 0.86884 1.24368 1.02975 1.00565 0.94767 1.20907 0.92617 0.86548 0.94087 0.91461 1.42201 1.59836 1.22534 1.09880 1.19261 1.27194 1.02884 0.88289 0.90931 1.24788 1.00407 0.98457 0.97140 1.69663 1.38783 1.24149 1.25160 0.86161 0.77191 0.79958 0.82682 1.21661 1.21724 1.20690 1.23873 0.96039 0.99772 1.00584 1.88587 1.27264 1.77844 1.32582 0.92825 0.92959 0.91720 0.91080 0.91491 0.89666 0.90057 0.89619 0.89059 0.77166 0.91285 0.90998 0.77967 0.93353 0.90859 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.83 37.16 0.37 -0.93 16 2 C -0.13 -1.01 5.51 -26.73 -0.15 -1.16 16 3 C 0.08 0.70 3.51 -26.01 -0.09 0.60 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.15 -0.99 6.54 -24.78 -0.16 -1.15 16 6 C -0.15 -1.14 6.54 -24.49 -0.16 -1.30 16 7 C 0.06 0.71 3.86 -26.86 -0.10 0.61 16 8 H 0.09 0.83 8.14 -51.92 -0.42 0.41 16 9 C 0.51 7.73 7.19 -10.99 -0.08 7.65 16 10 O -0.52 -10.80 16.15 -13.79 -0.22 -11.02 16 11 N -0.72 -9.40 5.34 -52.88 -0.28 -9.68 16 12 C 0.13 2.11 4.13 -66.97 -0.28 1.83 16 13 H 0.11 2.32 7.46 -51.93 -0.39 1.93 16 14 C -0.18 -3.28 7.70 -25.77 -0.20 -3.48 16 15 C 0.17 3.35 4.55 -67.11 -0.31 3.05 16 16 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 17 N -0.71 -17.82 5.31 -52.63 -0.28 -18.10 16 18 C -0.25 -6.84 9.97 -15.06 -0.15 -6.99 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 26 C -0.16 -2.54 7.57 -25.92 -0.20 -2.74 16 27 O -0.34 -4.60 9.90 -54.58 -0.54 -5.14 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.42 7.86 -51.93 -0.41 0.01 16 35 H 0.09 0.78 8.05 -51.92 -0.42 0.36 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.39 3.65 8.73 -40.82 -0.36 3.29 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.39 10.45 7.90 -40.82 -0.32 10.12 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -34.45 352.86 -9.25 -43.70 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -7.34 Total: 9.62 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.60 Total: -4.44 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: 0.16 Total: -55.55 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.76 Total: -16.16 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.45 -9.25 -43.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020207736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.216 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds