Wall clock time and date at job start Tue Mar 31 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47290 * 2 1 4 4 H 1.09002 * 109.89300 * 305.92673 * 3 2 1 5 5 C 1.54383 * 109.83053 * 184.99804 * 3 2 1 6 6 C 1.55304 * 102.24838 * 219.12876 * 5 3 2 7 7 C 1.54938 * 100.94573 * 34.13249 * 6 5 3 8 8 H 1.09008 * 110.31125 * 82.57014 * 7 6 5 9 9 C 1.50696 * 110.31340 * 204.63791 * 7 6 5 10 10 O 1.21276 * 120.00341 * 114.99814 * 9 7 6 11 11 N 1.34780 * 120.00150 * 295.00683 * 9 7 6 12 12 C 1.46500 * 119.99927 * 179.97438 * 11 9 7 13 13 H 1.08994 * 112.85076 * 336.18663 * 12 11 9 14 14 C 1.54051 * 113.69607 * 107.46377 * 12 11 9 15 15 C 1.53786 * 86.98423 * 139.98455 * 14 12 11 16 16 H 1.08999 * 113.61284 * 219.97824 * 15 14 12 17 17 N 1.46506 * 113.61071 * 89.16307 * 15 14 12 18 18 C 1.36931 * 119.99939 * 105.86267 * 17 15 14 19 19 H 1.08000 * 120.00644 * 359.97438 * 18 17 15 20 20 C 1.38815 * 119.99715 * 179.97438 * 18 17 15 21 21 N 1.31611 * 120.00107 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99746 * 179.72150 * 20 18 17 23 23 H 1.48500 * 109.46781 * 90.00854 * 22 20 18 24 24 H 1.48496 * 109.47225 * 210.00413 * 22 20 18 25 25 H 1.48494 * 109.47296 * 330.00424 * 22 20 18 26 26 C 1.53778 * 87.17467 * 334.57247 * 15 14 12 27 27 O 1.43232 * 109.83132 * 66.86295 * 3 2 1 28 28 H 1.08999 * 109.47091 * 60.00546 * 1 2 3 29 29 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47208 * 300.00053 * 1 2 3 31 31 H 1.09002 * 109.47406 * 239.99536 * 2 1 3 32 32 H 1.09006 * 109.46800 * 120.00058 * 2 1 3 33 33 H 1.09003 * 110.84670 * 100.93766 * 5 3 2 34 34 H 1.08999 * 111.02354 * 337.39829 * 5 3 2 35 35 H 1.09008 * 111.12440 * 276.20950 * 6 5 3 36 36 H 1.09003 * 111.12544 * 152.05615 * 6 5 3 37 37 H 0.97005 * 119.99783 * 359.97438 * 11 9 7 38 38 H 1.09000 * 113.61438 * 25.48398 * 14 12 11 39 39 H 1.08997 * 113.69655 * 254.50163 * 14 12 11 40 40 H 0.97000 * 119.99307 * 285.86061 * 17 15 14 41 41 H 0.97000 * 120.00330 * 179.97438 * 21 20 18 42 42 H 1.08996 * 113.61908 * 140.02474 * 26 15 14 43 43 H 1.09004 * 113.61191 * 270.92766 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9926 -0.8300 5 6 3.5786 1.4540 -0.1265 6 6 3.9797 2.6054 0.8354 7 6 2.8993 2.4589 1.9362 8 1 3.1871 1.6855 2.6484 9 6 2.6944 3.7723 2.6462 10 8 1.6306 4.3483 2.5608 11 7 3.6935 4.3069 3.3759 12 6 3.4945 5.5840 4.0656 13 1 2.7120 6.1924 3.6124 14 6 3.3628 5.4480 5.5945 15 6 4.2171 6.7224 5.6999 16 1 4.9488 6.6919 6.5072 17 7 3.4306 7.9584 5.6913 18 6 3.2575 8.6679 6.8496 19 1 3.7004 8.3162 7.7697 20 6 2.5128 9.8393 6.8412 21 7 1.9726 10.2678 5.7202 22 14 2.2702 10.8031 8.4230 23 1 3.3660 11.7942 8.5716 24 1 0.9656 11.5109 8.3762 25 1 2.2861 9.8704 9.5783 26 6 4.8002 6.3537 4.3256 27 8 1.7029 2.0771 1.2390 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8821 1.6791 -1.1490 34 1 4.0052 0.5066 0.2032 35 1 3.9076 3.5739 0.3404 36 1 4.9787 2.4476 1.2419 37 1 4.5444 3.8461 3.4444 38 1 3.8508 4.5606 5.9975 39 1 2.3435 5.5742 5.9593 40 1 3.0326 8.2741 4.8650 41 1 1.4519 11.0861 5.7144 42 1 4.9406 7.2105 3.6667 43 1 5.6806 5.7134 4.3824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020207736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:45 Heat of formation + Delta-G solvation = -84.577088 kcal Electronic energy + Delta-G solvation = -22176.271108 eV Core-core repulsion = 18834.936360 eV Total energy + Delta-G solvation = -3341.334747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51196 -40.32581 -39.01797 -35.75641 -34.61250 -34.27865 -33.02114 -31.69516 -29.67902 -26.53363 -26.41460 -25.44446 -24.08324 -22.81509 -22.09084 -21.26176 -20.23055 -19.36517 -18.67074 -17.75787 -17.18630 -16.78586 -16.65155 -15.97630 -15.69841 -15.52297 -15.10050 -15.01649 -14.44456 -14.38126 -14.04658 -13.90870 -13.60562 -13.33463 -13.29256 -13.05399 -12.81219 -12.76547 -12.60245 -12.41082 -12.18266 -11.88260 -11.84244 -11.79475 -11.71002 -11.58541 -11.34159 -10.98140 -10.87942 -10.36593 -9.99836 -9.04124 -7.96699 -5.26634 1.46180 1.48877 1.54854 1.57151 1.94556 2.54573 2.96550 3.35312 3.43793 3.63657 3.68501 3.77692 3.83144 3.88920 4.02967 4.11919 4.22531 4.29538 4.32315 4.36522 4.46008 4.55381 4.79278 4.83024 4.83619 4.87003 4.96186 4.99098 5.00549 5.07050 5.14122 5.14718 5.24609 5.31171 5.33999 5.41457 5.49959 5.67872 6.01760 6.25839 6.61604 7.29393 7.30083 8.06776 8.27671 9.27021 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035468 B = 0.002887 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.250850 B = 9695.020979 C =10083.106888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.063 3.937 4 H 0.069 0.931 5 C -0.138 4.138 6 C -0.140 4.140 7 C 0.065 3.935 8 H 0.125 0.875 9 C 0.500 3.500 10 O -0.587 6.587 11 N -0.693 5.693 12 C 0.129 3.871 13 H 0.064 0.936 14 C -0.172 4.172 15 C 0.150 3.850 16 H 0.080 0.920 17 N -0.725 5.725 18 C -0.243 4.243 19 H 0.083 0.917 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.977 3.023 23 H -0.283 1.283 24 H -0.299 1.299 25 H -0.267 1.267 26 C -0.133 4.133 27 O -0.386 6.386 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.129 0.871 37 H 0.421 0.579 38 H 0.109 0.891 39 H 0.030 0.970 40 H 0.371 0.629 41 H 0.251 0.749 42 H 0.061 0.939 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -24.635 -12.232 29.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C 0.006 3.994 4 H 0.087 0.913 5 C -0.175 4.175 6 C -0.177 4.177 7 C 0.005 3.995 8 H 0.142 0.858 9 C 0.287 3.713 10 O -0.467 6.467 11 N -0.346 5.346 12 C 0.024 3.976 13 H 0.082 0.918 14 C -0.214 4.214 15 C 0.039 3.961 16 H 0.098 0.902 17 N -0.363 5.363 18 C -0.374 4.374 19 H 0.101 0.899 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.806 3.194 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.192 1.192 26 C -0.172 4.172 27 O -0.305 6.305 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.259 0.741 38 H 0.127 0.873 39 H 0.049 0.951 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.251 -24.143 -12.039 28.520 hybrid contribution -0.734 1.071 0.427 1.367 sum 8.518 -23.072 -11.612 27.197 Atomic orbital electron populations 1.21734 0.96461 1.01769 1.01132 1.21895 0.96068 0.94711 1.03657 1.23124 0.96596 0.94041 0.85685 0.91315 1.23193 0.92806 0.99777 1.01722 1.23301 0.99441 1.00104 0.94886 1.23012 0.87107 0.92804 0.96619 0.85808 1.21390 0.83655 0.87560 0.78697 1.90731 1.28502 1.63987 1.63434 1.45737 1.16403 1.22693 1.49751 1.22246 0.98858 0.84697 0.91807 0.91809 1.24252 1.00581 1.01153 0.95442 1.21266 0.92865 0.84879 0.97072 0.90173 1.42424 1.60845 1.24444 1.08538 1.19722 1.25694 1.02619 0.89410 0.89895 1.25668 1.01173 1.00109 1.00318 1.69842 1.40439 1.24632 1.27456 0.85082 0.76551 0.78558 0.79219 1.20947 1.22638 1.19210 1.23713 0.96811 0.99686 0.97036 1.88564 1.29223 1.78471 1.34274 0.92991 0.91527 0.94634 0.88466 0.91033 0.88060 0.87545 0.91413 0.85280 0.74099 0.87284 0.95118 0.79781 0.94062 0.92036 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.83 71.98 0.71 -1.89 16 2 C -0.13 -1.68 5.51 30.59 0.17 -1.52 16 3 C 0.06 1.08 3.51 31.06 0.11 1.19 16 4 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.14 -1.31 6.54 31.86 0.21 -1.10 16 6 C -0.14 -1.72 6.54 32.05 0.21 -1.51 16 7 C 0.07 1.33 3.86 30.51 0.12 1.45 16 8 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 9 C 0.50 15.17 7.19 87.66 0.63 15.80 16 10 O -0.59 -26.05 16.15 15.48 0.25 -25.80 16 11 N -0.69 -16.90 5.34 -439.61 -2.35 -19.25 16 12 C 0.13 4.29 4.13 45.61 0.19 4.48 16 13 H 0.06 2.81 7.46 -2.39 -0.02 2.79 16 14 C -0.17 -6.00 7.70 31.21 0.24 -5.76 16 15 C 0.15 5.70 4.55 45.52 0.21 5.91 16 16 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 17 N -0.72 -37.48 5.31 -320.44 -1.70 -39.18 16 18 C -0.24 -13.70 9.97 84.04 0.84 -12.86 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 21 N -0.97 -61.96 13.06 21.65 0.28 -61.68 16 22 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 24 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 C -0.13 -3.85 7.57 31.12 0.24 -3.62 16 27 O -0.39 -10.30 9.90 -130.48 -1.29 -11.59 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.03 0.79 7.90 -2.39 -0.02 0.77 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.11 0.54 7.86 -2.39 -0.02 0.52 16 35 H 0.07 1.10 8.05 -2.38 -0.02 1.08 16 36 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.42 5.91 8.73 -92.70 -0.81 5.10 16 38 H 0.11 2.91 8.14 -2.39 -0.02 2.90 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.37 21.09 7.90 -92.71 -0.73 20.36 16 41 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.13 2.47 8.12 -2.38 -0.02 2.45 16 Total: -1.00 -82.17 352.86 1.00 -81.17 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.54 Total: 30.91 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 4.33 Total: -3.73 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -3.77 Total: -120.11 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.04 Total: -37.39 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -82.17 1.00 -81.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020207736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.412 kcal (2) G-P(sol) polarization free energy of solvation -82.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds