Wall clock time and date at job start Tue Mar 31 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47507 * 2 1 4 4 H 1.08998 * 110.67384 * 56.50982 * 3 2 1 5 5 O 1.44380 * 110.61986 * 293.54701 * 3 2 1 6 6 C 1.43739 * 106.97820 * 201.43860 * 5 3 2 7 7 C 1.54106 * 107.29313 * 26.50894 * 6 5 3 8 8 C 1.54807 * 104.18688 * 357.97161 * 7 6 5 9 9 H 1.09005 * 110.90346 * 97.31858 * 8 7 6 10 10 C 1.50703 * 110.90909 * 220.91968 * 8 7 6 11 11 O 1.21272 * 119.99956 * 118.54717 * 10 8 7 12 12 N 1.34776 * 119.99878 * 298.54688 * 10 8 7 13 13 C 1.46500 * 120.00117 * 179.97438 * 12 10 8 14 14 H 1.09003 * 112.84650 * 336.20590 * 13 12 10 15 15 C 1.53781 * 113.61108 * 107.50127 * 13 12 10 16 16 C 1.53784 * 87.07889 * 89.12240 * 15 13 12 17 17 H 1.09007 * 113.69111 * 270.87148 * 16 15 13 18 18 N 1.46498 * 113.61957 * 139.98108 * 16 15 13 19 19 C 1.36938 * 120.00264 * 107.49575 * 18 16 15 20 20 H 1.07997 * 119.99604 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99935 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99692 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00217 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46732 * 89.99912 * 23 21 19 25 25 H 1.48493 * 109.47061 * 209.99925 * 23 21 19 26 26 H 1.48500 * 109.46951 * 330.00419 * 23 21 19 27 27 C 1.53777 * 113.61664 * 205.00435 * 13 12 10 28 28 H 1.08999 * 109.47333 * 300.00480 * 1 2 3 29 29 H 1.09005 * 109.46452 * 60.00000 * 1 2 3 30 30 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47333 * 239.99520 * 2 1 3 32 32 H 1.09001 * 109.46712 * 120.00448 * 2 1 3 33 33 H 1.09004 * 109.87903 * 267.08704 * 6 5 3 34 34 H 1.08997 * 109.88645 * 145.93327 * 6 5 3 35 35 H 1.08997 * 110.48714 * 116.64823 * 7 6 5 36 36 H 1.09000 * 110.48945 * 239.29694 * 7 6 5 37 37 H 0.97003 * 119.99886 * 0.02562 * 12 10 8 38 38 H 1.09000 * 113.61373 * 203.66450 * 15 13 12 39 39 H 1.09002 * 113.61770 * 334.57573 * 15 13 12 40 40 H 0.96997 * 119.99961 * 287.50733 * 18 16 15 41 41 H 0.96998 * 119.99449 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61331 * 25.43264 * 27 13 12 43 43 H 1.08994 * 113.61185 * 156.34236 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6378 1.9928 0.8505 5 8 1.7006 2.1018 -1.2388 6 6 2.6052 3.2090 -1.3865 7 6 3.8918 2.8554 -0.6154 8 6 3.5896 1.4734 0.0134 9 1 4.0001 0.6698 -0.5981 10 6 4.1170 1.3971 1.4230 11 8 3.3528 1.2171 2.3474 12 7 5.4378 1.5287 1.6565 13 6 5.9504 1.4551 3.0269 14 1 5.1972 1.7040 3.7744 15 6 6.7152 0.1556 3.3294 16 6 7.9805 0.8788 2.8384 17 1 8.1555 0.7768 1.7673 18 7 9.1717 0.5868 3.6396 19 6 10.1608 -0.2116 3.1303 20 1 10.0628 -0.6257 2.1376 21 6 11.2892 -0.4886 3.8897 22 7 12.2401 -1.2556 3.3999 23 14 11.4582 0.2272 5.6069 24 1 10.8674 -0.7113 6.5945 25 1 12.8955 0.4332 5.9180 26 1 10.7458 1.5284 5.6730 27 6 7.2842 2.1940 3.2263 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.1585 4.1110 -0.9682 34 1 2.8353 3.3616 -2.4410 35 1 4.7390 2.7870 -1.2979 36 1 4.0858 3.5942 0.1622 37 1 6.0490 1.6730 0.9171 38 1 6.7413 -0.0990 4.3889 39 1 6.4188 -0.6825 2.6986 40 1 9.2597 0.9589 4.5310 41 1 13.0288 -1.4488 3.9305 42 1 7.4470 3.0013 2.5123 43 1 7.4658 2.4964 4.2575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020415487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:32 Heat of formation + Delta-G solvation = -58.607936 kcal Electronic energy + Delta-G solvation = -22392.912744 eV Core-core repulsion = 19052.704103 eV Total energy + Delta-G solvation = -3340.208640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75299 -39.30730 -37.85089 -34.28492 -33.73647 -33.11042 -32.03546 -30.43848 -28.68003 -25.30209 -25.15418 -24.02342 -22.77998 -21.88914 -21.30441 -20.39827 -19.24483 -17.80689 -17.48892 -16.52897 -16.20002 -15.69438 -15.29321 -15.00404 -14.77268 -14.30678 -13.90925 -13.77713 -13.68248 -13.35500 -13.22621 -12.69900 -12.55874 -12.26026 -12.18813 -12.06612 -11.91336 -11.71052 -11.15519 -11.05993 -11.02413 -10.98205 -10.86655 -10.46811 -10.25469 -10.02822 -9.94662 -9.78782 -9.62511 -9.00882 -8.89932 -7.33897 -5.84210 -3.20409 2.49516 3.01785 3.32614 3.35692 3.41122 3.54743 4.14953 4.30225 4.46584 4.52704 4.68770 4.83164 4.87039 4.94984 4.97659 5.03778 5.13674 5.20700 5.24515 5.36174 5.40264 5.40843 5.54808 5.63897 5.64886 5.70132 5.71474 5.83930 5.90522 5.97115 6.05100 6.12345 6.14172 6.36360 6.45883 6.51626 6.61512 6.88951 7.45649 7.91080 8.13703 8.35322 9.12604 9.85232 10.04585 11.33892 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033110 B = 0.003084 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.455523 B = 9075.993619 C = 9217.924438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.083 0.917 5 O -0.372 6.372 6 C 0.049 3.951 7 C -0.148 4.148 8 C -0.145 4.145 9 H 0.114 0.886 10 C 0.526 3.474 11 O -0.538 6.538 12 N -0.704 5.704 13 C 0.116 3.884 14 H 0.097 0.903 15 C -0.176 4.176 16 C 0.172 3.828 17 H 0.082 0.918 18 N -0.736 5.736 19 C -0.251 4.251 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.163 4.163 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.402 0.598 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 8.858 -8.611 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.101 0.899 5 O -0.291 6.291 6 C -0.028 4.028 7 C -0.186 4.186 8 C -0.166 4.166 9 H 0.132 0.868 10 C 0.312 3.688 11 O -0.415 6.415 12 N -0.354 5.354 13 C 0.010 3.990 14 H 0.115 0.885 15 C -0.218 4.218 16 C 0.061 3.939 17 H 0.100 0.900 18 N -0.376 5.376 19 C -0.381 4.381 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.202 4.202 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.236 0.764 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.726 8.511 -8.228 23.869 hybrid contribution 0.912 0.564 1.039 1.493 sum -19.814 9.075 -7.189 22.949 Atomic orbital electron populations 1.21687 0.95101 1.01572 1.02143 1.21554 0.96953 0.93872 1.02975 1.22994 0.90454 0.94916 0.87490 0.89905 1.88891 1.55905 1.43659 1.40657 1.23109 0.88629 0.90185 1.00869 1.22958 0.99639 0.95539 1.00486 1.22976 0.98592 1.00189 0.94862 0.86811 1.20151 0.82339 0.76038 0.90270 1.90701 1.56710 1.48734 1.45380 1.45716 1.07423 1.72878 1.09421 1.21811 0.95205 0.98759 0.83214 0.88509 1.24271 0.98784 0.96491 1.02235 1.21608 0.85293 0.91378 0.95634 0.90040 1.42747 1.19472 1.59145 1.16237 1.19120 0.96080 1.21675 1.01199 0.89169 1.24704 0.96601 0.99602 0.98125 1.69705 1.09654 1.41060 1.37489 0.86542 0.77071 0.79006 0.85858 1.20984 1.21664 1.20279 1.23880 0.94772 0.99035 1.02546 0.92725 0.92207 0.92708 0.91309 0.89996 0.92196 0.89519 0.89345 0.90038 0.76385 0.89642 0.91949 0.80373 0.92961 0.91426 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.83 37.16 0.37 -0.98 16 2 C -0.12 -1.15 5.71 -26.74 -0.15 -1.31 16 3 C 0.10 1.03 2.38 -25.68 -0.06 0.97 16 4 H 0.08 0.98 7.53 -51.93 -0.39 0.58 16 5 O -0.37 -3.87 10.89 -35.23 -0.38 -4.26 16 6 C 0.05 0.38 7.70 37.74 0.29 0.67 16 7 C -0.15 -1.08 6.55 -25.20 -0.16 -1.25 16 8 C -0.14 -1.36 2.95 -89.76 -0.26 -1.62 16 9 H 0.11 0.95 8.06 -51.93 -0.42 0.54 16 10 C 0.53 6.42 7.05 -10.98 -0.08 6.34 16 11 O -0.54 -8.45 15.29 5.56 0.09 -8.36 16 12 N -0.70 -8.11 5.21 -53.02 -0.28 -8.39 16 13 C 0.12 1.58 4.32 -67.12 -0.29 1.29 16 14 H 0.10 1.40 7.46 -51.93 -0.39 1.01 16 15 C -0.18 -2.85 7.68 -25.92 -0.20 -3.05 16 16 C 0.17 3.06 4.36 -67.12 -0.29 2.76 16 17 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 18 N -0.74 -16.73 5.21 -52.63 -0.27 -17.01 16 19 C -0.25 -6.89 10.45 -15.06 -0.16 -7.05 16 20 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -28.83 13.97 55.49 0.78 -28.06 16 23 Si 0.89 21.68 27.74 -169.99 -4.71 16.96 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 27 C -0.16 -2.29 7.58 -25.92 -0.20 -2.49 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.89 8.03 -51.93 -0.42 0.47 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 37 H 0.40 3.80 8.70 -40.82 -0.36 3.44 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.36 8.12 5.78 -40.82 -0.24 7.88 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 1.27 8.12 -51.93 -0.42 0.85 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -32.47 348.27 -8.10 -40.57 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.26 Total: 8.93 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.30 Total: -5.64 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.22 Total: -53.45 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -0.30 Total: -12.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.47 -8.10 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020415487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.037 kcal (2) G-P(sol) polarization free energy of solvation -32.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds