Wall clock time and date at job start Tue Mar 31 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47507 * 2 1 4 4 H 1.08998 * 110.67384 * 56.50982 * 3 2 1 5 5 O 1.44380 * 110.61986 * 293.54701 * 3 2 1 6 6 C 1.43739 * 106.97820 * 201.43860 * 5 3 2 7 7 C 1.54106 * 107.29313 * 26.50894 * 6 5 3 8 8 C 1.54807 * 104.18688 * 357.97161 * 7 6 5 9 9 H 1.09005 * 110.90346 * 97.31858 * 8 7 6 10 10 C 1.50703 * 110.90909 * 220.91968 * 8 7 6 11 11 O 1.21272 * 119.99956 * 118.54717 * 10 8 7 12 12 N 1.34776 * 119.99878 * 298.54688 * 10 8 7 13 13 C 1.46500 * 120.00117 * 179.97438 * 12 10 8 14 14 H 1.09003 * 112.84650 * 336.20590 * 13 12 10 15 15 C 1.53781 * 113.61108 * 107.50127 * 13 12 10 16 16 C 1.53784 * 87.07889 * 89.12240 * 15 13 12 17 17 H 1.09007 * 113.69111 * 270.87148 * 16 15 13 18 18 N 1.46498 * 113.61957 * 139.98108 * 16 15 13 19 19 C 1.36938 * 120.00264 * 107.49575 * 18 16 15 20 20 H 1.07997 * 119.99604 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99935 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99692 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00217 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46732 * 89.99912 * 23 21 19 25 25 H 1.48493 * 109.47061 * 209.99925 * 23 21 19 26 26 H 1.48500 * 109.46951 * 330.00419 * 23 21 19 27 27 C 1.53777 * 113.61664 * 205.00435 * 13 12 10 28 28 H 1.08999 * 109.47333 * 300.00480 * 1 2 3 29 29 H 1.09005 * 109.46452 * 60.00000 * 1 2 3 30 30 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47333 * 239.99520 * 2 1 3 32 32 H 1.09001 * 109.46712 * 120.00448 * 2 1 3 33 33 H 1.09004 * 109.87903 * 267.08704 * 6 5 3 34 34 H 1.08997 * 109.88645 * 145.93327 * 6 5 3 35 35 H 1.08997 * 110.48714 * 116.64823 * 7 6 5 36 36 H 1.09000 * 110.48945 * 239.29694 * 7 6 5 37 37 H 0.97003 * 119.99886 * 0.02562 * 12 10 8 38 38 H 1.09000 * 113.61373 * 203.66450 * 15 13 12 39 39 H 1.09002 * 113.61770 * 334.57573 * 15 13 12 40 40 H 0.96997 * 119.99961 * 287.50733 * 18 16 15 41 41 H 0.96998 * 119.99449 * 179.97438 * 22 21 19 42 42 H 1.08994 * 113.61331 * 25.43264 * 27 13 12 43 43 H 1.08994 * 113.61185 * 156.34236 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6378 1.9928 0.8505 5 8 1.7006 2.1018 -1.2388 6 6 2.6052 3.2090 -1.3865 7 6 3.8918 2.8554 -0.6154 8 6 3.5896 1.4734 0.0134 9 1 4.0001 0.6698 -0.5981 10 6 4.1170 1.3971 1.4230 11 8 3.3528 1.2171 2.3474 12 7 5.4378 1.5287 1.6565 13 6 5.9504 1.4551 3.0269 14 1 5.1972 1.7040 3.7744 15 6 6.7152 0.1556 3.3294 16 6 7.9805 0.8788 2.8384 17 1 8.1555 0.7768 1.7673 18 7 9.1717 0.5868 3.6396 19 6 10.1608 -0.2116 3.1303 20 1 10.0628 -0.6257 2.1376 21 6 11.2892 -0.4886 3.8897 22 7 12.2401 -1.2556 3.3999 23 14 11.4582 0.2272 5.6069 24 1 10.8674 -0.7113 6.5945 25 1 12.8955 0.4332 5.9180 26 1 10.7458 1.5284 5.6730 27 6 7.2842 2.1940 3.2263 28 1 -0.3634 0.5139 0.8899 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.1585 4.1110 -0.9682 34 1 2.8353 3.3616 -2.4410 35 1 4.7390 2.7870 -1.2979 36 1 4.0858 3.5942 0.1622 37 1 6.0490 1.6730 0.9171 38 1 6.7413 -0.0990 4.3889 39 1 6.4188 -0.6825 2.6986 40 1 9.2597 0.9589 4.5310 41 1 13.0288 -1.4488 3.9305 42 1 7.4470 3.0013 2.5123 43 1 7.4658 2.4964 4.2575 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020415487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:31 Heat of formation + Delta-G solvation = -81.539613 kcal Electronic energy + Delta-G solvation = -22393.907136 eV Core-core repulsion = 19052.704103 eV Total energy + Delta-G solvation = -3341.203033 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67705 -40.34097 -38.97456 -35.87889 -34.56176 -34.32969 -33.19119 -32.16057 -29.38588 -26.65241 -26.52280 -25.14091 -23.78277 -23.22507 -22.08741 -21.32013 -20.65431 -19.45003 -18.60911 -17.42690 -17.21574 -16.65684 -16.48757 -16.19936 -16.06455 -15.66355 -15.03754 -14.71357 -14.55087 -14.51169 -14.24879 -14.10325 -13.96304 -13.68528 -13.36357 -13.16698 -12.89231 -12.65306 -12.55363 -12.40570 -12.05924 -11.87142 -11.85405 -11.82306 -11.76649 -11.61827 -11.25186 -10.93571 -10.89560 -10.60773 -10.05142 -9.28415 -8.02949 -5.36155 1.38433 1.41832 1.48961 1.53258 2.06421 2.48511 2.82269 3.27256 3.45984 3.56171 3.61786 3.71514 3.72610 3.80294 4.06003 4.12640 4.20436 4.23960 4.26079 4.27823 4.42980 4.52795 4.68838 4.77682 4.82939 4.86693 4.87733 4.91395 4.98869 5.06815 5.08642 5.11607 5.16018 5.21574 5.22931 5.38720 5.64512 5.77022 5.90977 6.22299 6.51759 7.07628 7.19003 7.84714 8.02796 9.18480 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033110 B = 0.003084 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.455523 B = 9075.993619 C = 9217.924438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C 0.099 3.901 4 H 0.064 0.936 5 O -0.386 6.386 6 C 0.042 3.958 7 C -0.141 4.141 8 C -0.139 4.139 9 H 0.128 0.872 10 C 0.527 3.473 11 O -0.576 6.576 12 N -0.696 5.696 13 C 0.132 3.868 14 H 0.094 0.906 15 C -0.175 4.175 16 C 0.154 3.846 17 H 0.081 0.919 18 N -0.742 5.742 19 C -0.233 4.233 20 H 0.059 0.941 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.954 3.046 24 H -0.282 1.282 25 H -0.298 1.298 26 H -0.247 1.247 27 C -0.142 4.142 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.367 0.633 41 H 0.257 0.743 42 H 0.091 0.909 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.216 10.761 -8.818 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.041 3.959 4 H 0.082 0.918 5 O -0.306 6.306 6 C -0.034 4.034 7 C -0.179 4.179 8 C -0.161 4.161 9 H 0.146 0.854 10 C 0.315 3.685 11 O -0.455 6.455 12 N -0.347 5.347 13 C 0.026 3.974 14 H 0.112 0.888 15 C -0.217 4.217 16 C 0.045 3.955 17 H 0.099 0.901 18 N -0.383 5.383 19 C -0.364 4.364 20 H 0.077 0.923 21 C -0.257 4.257 22 N -0.635 5.635 23 Si 0.782 3.218 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.171 1.171 27 C -0.181 4.181 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.201 0.799 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.786 10.461 -8.469 25.609 hybrid contribution 1.128 -0.058 0.993 1.504 sum -20.659 10.403 -7.476 24.308 Atomic orbital electron populations 1.21666 0.94635 1.02152 1.01801 1.21545 0.97456 0.93766 1.02652 1.22889 0.91147 0.94779 0.87068 0.91822 1.88877 1.56892 1.44515 1.40271 1.23324 0.88375 0.89518 1.02215 1.22986 1.00304 0.93884 1.00741 1.22960 0.97765 1.02168 0.93196 0.85391 1.20608 0.82040 0.74866 0.91016 1.90692 1.57615 1.50365 1.46817 1.45630 1.07590 1.72439 1.09030 1.21534 0.94919 0.96624 0.84333 0.88751 1.24173 0.98443 0.97429 1.01619 1.21968 0.83977 0.94336 0.95234 0.90095 1.42757 1.19884 1.58728 1.16917 1.19112 0.96799 1.20785 0.99751 0.92308 1.25530 0.96591 1.00865 1.02725 1.69888 1.10597 1.43613 1.39410 0.85418 0.76716 0.79435 0.80271 1.20848 1.22442 1.17139 1.23706 0.93262 0.97630 1.03510 0.93265 0.92289 0.91693 0.90491 0.91309 0.91814 0.87612 0.86915 0.89990 0.74876 0.90331 0.92825 0.79948 0.93395 0.89092 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.83 71.98 0.71 -1.86 16 2 C -0.12 -2.25 5.71 30.59 0.17 -2.07 16 3 C 0.10 1.97 2.38 31.27 0.07 2.04 16 4 H 0.06 1.50 7.53 -2.39 -0.02 1.48 16 5 O -0.39 -7.43 10.89 -148.98 -1.62 -9.05 16 6 C 0.04 0.55 7.70 72.36 0.56 1.10 16 7 C -0.14 -1.64 6.55 31.59 0.21 -1.44 16 8 C -0.14 -2.34 2.95 -10.24 -0.03 -2.37 16 9 H 0.13 1.82 8.06 -2.38 -0.02 1.80 16 10 C 0.53 12.00 7.05 87.66 0.62 12.61 16 11 O -0.58 -17.65 15.29 -3.01 -0.05 -17.70 16 12 N -0.70 -14.38 5.21 -440.05 -2.29 -16.67 16 13 C 0.13 3.31 4.32 45.52 0.20 3.51 16 14 H 0.09 2.53 7.46 -2.39 -0.02 2.51 16 15 C -0.17 -5.44 7.68 31.12 0.24 -5.21 16 16 C 0.15 5.19 4.36 45.52 0.20 5.39 16 17 H 0.08 2.73 8.10 -2.38 -0.02 2.71 16 18 N -0.74 -32.69 5.21 -320.43 -1.67 -34.36 16 19 C -0.23 -12.88 10.45 84.03 0.88 -12.00 16 20 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 21 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 22 N -0.98 -62.43 13.97 21.65 0.30 -62.12 16 23 Si 0.95 44.52 27.74 68.60 1.90 46.43 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.25 -10.18 6.52 99.48 0.65 -9.54 16 27 C -0.14 -3.54 7.58 31.12 0.24 -3.31 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.04 7.92 -2.38 -0.02 1.02 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.49 8.03 -2.39 -0.02 1.48 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.97 7.85 -2.39 -0.02 0.96 16 37 H 0.41 6.57 8.70 -92.71 -0.81 5.76 16 38 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.37 15.51 5.78 -92.71 -0.54 14.97 16 41 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 42 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.10 2.36 8.12 -2.39 -0.02 2.34 16 Total: -1.00 -71.26 348.27 0.70 -70.56 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.40 Total: 29.86 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: 4.52 Total: -6.94 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -3.66 Total: -113.16 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -1.67 Total: -26.75 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Total: -71.26 0.70 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020415487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.980 kcal (2) G-P(sol) polarization free energy of solvation -71.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds