Wall clock time and date at job start Tue Mar 31 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47093 * 2 1 4 4 H 1.09000 * 109.47006 * 54.54193 * 3 2 1 5 5 O 1.42893 * 109.47321 * 294.54584 * 3 2 1 6 6 C 1.42895 * 114.00518 * 149.99722 * 5 3 2 7 7 C 1.50699 * 109.47140 * 174.54452 * 3 2 1 8 8 O 1.21276 * 119.99809 * 102.07000 * 7 3 2 9 9 N 1.34783 * 120.00006 * 282.06824 * 7 3 2 10 10 C 1.47615 * 120.89873 * 4.70810 * 9 7 3 11 11 C 1.53885 * 107.50261 * 132.49100 * 10 9 7 12 12 H 1.09002 * 112.10082 * 182.65777 * 11 10 9 13 13 C 1.54547 * 108.37168 * 307.00508 * 11 10 9 14 14 C 1.54286 * 104.84909 * 89.29015 * 13 11 10 15 15 C 1.54964 * 104.80557 * 359.82193 * 14 13 11 16 16 H 1.09003 * 112.25376 * 146.60810 * 15 14 13 17 17 C 1.47158 * 120.70804 * 185.39208 * 9 7 3 18 18 N 1.48303 * 104.15318 * 24.98609 * 15 14 13 19 19 C 1.36934 * 128.07565 * 139.04580 * 18 15 14 20 20 H 1.07995 * 120.00281 * 194.80781 * 19 18 15 21 21 C 1.38820 * 119.99867 * 14.80729 * 19 18 15 22 22 N 1.31613 * 120.00284 * 9.36426 * 21 19 18 23 23 Si 1.86802 * 119.99891 * 189.36657 * 21 19 18 24 24 H 1.48492 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48508 * 109.47041 * 300.00041 * 23 21 19 26 26 H 1.48500 * 109.47278 * 59.99702 * 23 21 19 27 27 H 1.09009 * 109.47332 * 299.99935 * 1 2 3 28 28 H 1.09005 * 109.47280 * 59.99526 * 1 2 3 29 29 H 1.09004 * 109.47419 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46834 * 240.00351 * 2 1 3 31 31 H 1.08997 * 109.47260 * 120.00163 * 2 1 3 32 32 H 1.09007 * 109.47171 * 60.00100 * 6 5 3 33 33 H 1.09001 * 109.47860 * 179.97438 * 6 5 3 34 34 H 1.08998 * 109.47498 * 300.00312 * 6 5 3 35 35 H 1.08999 * 109.38983 * 13.37745 * 10 9 7 36 36 H 1.08997 * 110.63855 * 252.31289 * 10 9 7 37 37 H 1.08997 * 110.36772 * 208.14163 * 13 11 10 38 38 H 1.08999 * 110.35928 * 330.45587 * 13 11 10 39 39 H 1.09004 * 110.35797 * 118.85025 * 14 13 11 40 40 H 1.08997 * 110.36288 * 241.05360 * 14 13 11 41 41 H 1.08999 * 109.74859 * 107.61289 * 17 9 7 42 42 H 1.08997 * 109.75057 * 346.87819 * 17 9 7 43 43 H 0.96995 * 120.00578 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9838 0.8371 5 8 1.6711 2.0782 -1.2254 6 6 1.4641 3.4874 -1.1100 7 6 3.5409 1.4447 0.1351 8 8 4.2372 1.6325 -0.8400 9 7 4.1094 1.2379 1.3395 10 6 3.2866 0.9054 2.5191 11 6 3.9459 -0.2958 3.2196 12 1 3.3701 -0.6351 4.0806 13 6 4.1497 -1.4168 2.1754 14 6 5.5417 -1.1438 1.5687 15 6 6.0511 0.1236 2.3006 16 1 7.1323 0.1143 2.4382 17 6 5.5662 1.3533 1.5126 18 7 5.3217 0.1144 3.5919 19 6 5.8043 0.4193 4.8366 20 1 5.2406 0.1457 5.7162 21 6 7.0181 1.0800 4.9677 22 7 7.6155 1.5761 3.9051 23 14 7.8037 1.2648 6.6524 24 1 9.0858 2.0026 6.5224 25 1 6.8871 2.0175 7.5461 26 1 8.0629 -0.0794 7.2279 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 2.3825 3.9625 -0.7650 33 1 1.1878 3.8950 -2.0825 34 1 0.6647 3.6798 -0.3946 35 1 2.2814 0.6364 2.1949 36 1 3.2391 1.7511 3.2051 37 1 4.1316 -2.3935 2.6590 38 1 3.3820 -1.3604 1.4037 39 1 6.2081 -1.9863 1.7540 40 1 5.4586 -0.9551 0.4984 41 1 5.8004 2.2619 2.0672 42 1 6.0520 1.3808 0.5372 43 1 8.4638 2.0375 3.9966 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029235714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:39 Heat of formation + Delta-G solvation = -60.785091 kcal Electronic energy + Delta-G solvation = -24424.479645 eV Core-core repulsion = 21084.176596 eV Total energy + Delta-G solvation = -3340.303049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.79576 -39.87140 -38.24359 -35.63458 -34.48737 -34.08145 -32.19768 -31.06410 -29.13355 -27.81923 -26.80509 -25.50148 -25.19130 -22.88506 -21.44200 -21.23461 -20.33624 -18.89238 -18.07214 -17.67839 -16.95830 -16.61722 -16.51820 -16.17540 -15.55190 -15.36145 -14.92787 -14.76757 -14.65590 -14.41756 -14.36907 -13.54297 -13.45704 -13.29468 -13.24323 -13.01619 -12.77782 -12.68746 -12.60912 -12.43800 -12.04778 -11.95285 -11.83842 -11.71471 -11.56880 -11.47875 -11.26809 -11.11944 -10.75235 -10.21529 -9.74281 -8.71121 -7.84046 -5.20000 1.49777 1.51573 1.57686 1.58529 1.99376 2.51822 2.77691 3.35517 3.41282 3.54320 3.88457 3.92115 4.06755 4.12649 4.23300 4.30679 4.34534 4.36342 4.42993 4.47761 4.53168 4.62937 4.69093 4.78296 4.85222 4.88946 4.97553 5.06941 5.07705 5.11864 5.20635 5.22086 5.29270 5.40083 5.48671 5.53453 5.58358 5.81707 6.01935 6.23282 6.58405 7.06047 7.20472 7.74156 8.52826 9.27407 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026025 B = 0.005333 C = 0.005077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.631589 B = 5249.238831 C = 5514.147403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.104 0.896 5 O -0.376 6.376 6 C 0.024 3.976 7 C 0.479 3.521 8 O -0.588 6.588 9 N -0.591 5.591 10 C 0.092 3.908 11 C 0.128 3.872 12 H 0.100 0.900 13 C -0.114 4.114 14 C -0.129 4.129 15 C 0.166 3.834 16 H 0.077 0.923 17 C 0.128 3.872 18 N -0.603 5.603 19 C -0.230 4.230 20 H 0.085 0.915 21 C -0.058 4.058 22 N -0.941 5.941 23 Si 0.971 3.029 24 H -0.302 1.302 25 H -0.277 1.277 26 H -0.281 1.281 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.021 0.979 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 -2.811 -4.334 16.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.021 3.979 4 H 0.122 0.878 5 O -0.294 6.294 6 C -0.072 4.072 7 C 0.267 3.733 8 O -0.469 6.469 9 N -0.324 5.324 10 C -0.031 4.031 11 C 0.021 3.979 12 H 0.118 0.882 13 C -0.153 4.153 14 C -0.169 4.169 15 C 0.058 3.942 16 H 0.095 0.905 17 C 0.003 3.997 18 N -0.324 5.324 19 C -0.359 4.359 20 H 0.103 0.897 21 C -0.252 4.252 22 N -0.589 5.589 23 Si 0.801 3.199 24 H -0.229 1.229 25 H -0.203 1.203 26 H -0.207 1.207 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.040 0.960 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.653 -2.700 -4.855 16.609 hybrid contribution 1.512 0.904 0.896 1.976 sum -14.141 -1.796 -3.959 14.795 Atomic orbital electron populations 1.21697 0.92166 1.03211 1.02764 1.21788 0.98960 0.91287 1.03704 1.22251 0.88287 0.98174 0.89179 0.87792 1.87942 1.88147 1.22034 1.31253 1.23022 0.99615 0.80275 1.04324 1.22121 0.92780 0.76220 0.82140 1.90622 1.65690 1.51844 1.38745 1.48409 1.07792 1.67402 1.08772 1.22814 0.94609 0.99155 0.86562 1.22252 0.87033 0.92530 0.96122 0.88190 1.22507 0.96063 0.98729 0.97988 1.22580 0.98028 0.98072 0.98180 1.21767 0.97337 0.90576 0.84480 0.90473 1.21893 0.79670 1.00064 0.98071 1.45345 1.05738 1.78701 1.02655 1.19315 1.03387 1.29460 0.83756 0.89696 1.25551 1.00001 0.99496 1.00109 1.70034 1.18071 1.41709 1.29074 0.85264 0.77233 0.77412 0.80007 1.22886 1.20328 1.20713 0.91116 0.92511 0.90676 0.91829 0.88525 0.96039 0.87725 0.91180 0.86861 0.92509 0.90844 0.90259 0.92743 0.93252 0.94176 0.93158 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.81 71.98 0.71 -1.40 16 2 C -0.12 -2.52 5.22 30.59 0.16 -2.36 16 3 C 0.08 2.19 1.66 29.85 0.05 2.24 16 4 H 0.10 2.24 6.96 -2.39 -0.02 2.22 16 5 O -0.38 -10.69 9.50 -130.58 -1.24 -11.93 16 6 C 0.02 0.53 10.81 113.37 1.23 1.75 16 7 C 0.48 17.60 6.94 87.66 0.61 18.21 16 8 O -0.59 -27.01 16.06 15.38 0.25 -26.77 16 9 N -0.59 -22.15 2.24 -813.85 -1.82 -23.97 16 10 C 0.09 2.87 5.40 86.46 0.47 3.33 16 11 C 0.13 4.38 4.27 45.47 0.19 4.57 16 12 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 13 C -0.11 -3.53 6.18 31.56 0.20 -3.33 16 14 C -0.13 -4.96 6.21 31.70 0.20 -4.76 16 15 C 0.17 7.75 3.14 45.62 0.14 7.89 16 16 H 0.08 4.23 6.35 -2.39 -0.02 4.22 16 17 C 0.13 5.91 5.84 86.55 0.51 6.41 16 18 N -0.60 -27.75 2.80 -635.92 -1.78 -29.53 16 19 C -0.23 -11.77 10.37 84.04 0.87 -10.90 16 20 H 0.09 4.10 7.85 -2.91 -0.02 4.07 16 21 C -0.06 -3.08 5.42 84.87 0.46 -2.62 16 22 N -0.94 -53.84 10.43 21.65 0.23 -53.61 16 23 Si 0.97 43.80 29.56 68.60 2.03 45.82 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.06 0.93 7.84 -2.38 -0.02 0.91 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.85 4.01 -2.39 -0.01 1.84 16 32 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 35 H 0.11 2.48 4.50 -2.39 -0.01 2.47 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 2.08 5.61 -2.39 -0.01 2.06 16 39 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.05 1.91 7.85 -2.39 -0.02 1.90 16 41 H 0.04 2.14 7.85 -2.39 -0.02 2.12 16 42 H 0.05 2.45 7.08 -2.39 -0.02 2.44 16 43 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -68.47 328.77 4.43 -64.03 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.99 Total: 16.90 kcal Atomic # 6 Polarization: 13.26 SS G_CDS: 5.78 Total: 19.04 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.38 Total: -107.11 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.99 Total: -38.70 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -68.47 4.43 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029235714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.249 kcal (2) G-P(sol) polarization free energy of solvation -68.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds