Wall clock time and date at job start Tue Mar 31 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47246 * 2 1 4 4 H 1.09002 * 109.48101 * 55.02957 * 3 2 1 5 5 O 1.42904 * 109.48292 * 295.00001 * 3 2 1 6 6 C 1.42899 * 114.09711 * 178.84473 * 5 3 2 7 7 C 1.53098 * 109.41440 * 61.16120 * 6 5 3 8 8 C 1.53177 * 109.21356 * 302.35638 * 7 6 5 9 9 C 1.53100 * 109.49063 * 175.04882 * 3 2 1 10 10 H 1.09005 * 109.51861 * 57.69495 * 9 3 2 11 11 C 1.50700 * 109.52143 * 297.57208 * 9 3 2 12 12 O 1.21275 * 120.00072 * 359.97438 * 11 9 3 13 13 N 1.34778 * 119.99557 * 179.97438 * 11 9 3 14 14 C 1.46502 * 119.99967 * 179.97438 * 13 11 9 15 15 C 1.53953 * 113.73956 * 251.67550 * 14 13 11 16 16 N 1.47583 * 86.11400 * 222.04600 * 15 14 13 17 17 C 1.36933 * 134.49093 * 204.63898 * 16 15 14 18 18 H 1.08001 * 119.99834 * 179.97438 * 17 16 15 19 19 C 1.38815 * 120.00081 * 0.02562 * 17 16 15 20 20 N 1.31614 * 119.99745 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00242 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47100 * 59.99277 * 21 19 17 23 23 H 1.48491 * 109.47501 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46823 * 299.99904 * 21 19 17 25 25 C 1.47584 * 91.01625 * 24.64119 * 16 15 14 26 26 H 1.08999 * 109.47160 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47034 * 299.99709 * 1 2 3 28 28 H 1.09001 * 109.46652 * 59.99660 * 1 2 3 29 29 H 1.09007 * 109.46817 * 239.99775 * 2 1 3 30 30 H 1.08999 * 109.46921 * 120.00796 * 2 1 3 31 31 H 1.08999 * 109.48542 * 301.17828 * 6 5 3 32 32 H 1.08997 * 109.49104 * 181.14910 * 6 5 3 33 33 H 1.09002 * 109.52244 * 62.29577 * 7 6 5 34 34 H 1.09004 * 109.52508 * 182.42105 * 7 6 5 35 35 H 1.09001 * 109.54414 * 176.87772 * 8 7 6 36 36 H 1.09002 * 109.54680 * 297.14715 * 8 7 6 37 37 H 0.97003 * 120.00388 * 359.97438 * 13 11 9 38 38 H 1.08993 * 112.94480 * 23.40376 * 14 13 11 39 39 H 1.09003 * 113.76588 * 336.34336 * 15 14 13 40 40 H 1.08993 * 113.76754 * 107.74144 * 15 14 13 41 41 H 0.97006 * 119.99846 * 180.02562 * 20 19 17 42 42 H 1.09004 * 113.76513 * 221.06097 * 25 16 15 43 43 H 1.08999 * 113.87054 * 89.67230 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6059 1.9815 0.8421 5 8 1.6621 2.0816 -1.2210 6 6 2.0686 3.4484 -1.3141 7 6 3.5956 3.5313 -1.2425 8 6 4.0745 2.8897 0.0634 9 6 3.5660 1.4447 0.1246 10 1 3.9991 0.8714 -0.6951 11 6 3.9649 0.8245 1.4388 12 8 3.1133 0.4205 2.2019 13 7 5.2680 0.7189 1.7661 14 6 5.6559 0.1165 3.0439 15 6 6.1983 1.1303 4.0678 16 7 7.2232 0.1152 4.3795 17 6 8.0016 -0.1584 5.4723 18 1 8.6965 -0.9848 5.4471 19 6 7.8968 0.6257 6.6130 20 7 7.0495 1.6324 6.6439 21 14 8.9591 0.2529 8.1036 22 1 10.3922 0.3554 7.7282 23 1 8.6593 1.2289 9.1818 24 1 8.6708 -1.1219 8.5855 25 6 7.0723 -0.4865 3.0404 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 1.6348 4.0137 -0.4893 32 1 1.7259 3.8660 -2.2608 33 1 4.0294 3.0002 -2.0898 34 1 3.9055 4.5760 -1.2701 35 1 5.1641 2.8960 0.0947 36 1 3.6809 3.4507 0.9111 37 1 5.9492 1.0417 1.1555 38 1 4.8953 -0.5522 3.4467 39 1 6.6011 2.0373 3.6168 40 1 5.5139 1.3312 4.8919 41 1 6.9765 2.1805 7.4409 42 1 7.0858 -1.5764 3.0444 43 1 7.7313 -0.0557 2.2865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030418038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:28 Heat of formation + Delta-G solvation = -42.651478 kcal Electronic energy + Delta-G solvation = -22926.527403 eV Core-core repulsion = 19587.010687 eV Total energy + Delta-G solvation = -3339.516717 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50362 -38.80873 -37.44884 -34.33366 -33.65354 -33.28732 -31.79050 -30.10984 -27.47317 -25.45937 -24.85928 -24.71338 -22.89440 -21.34828 -21.05069 -19.92811 -19.54249 -17.24280 -16.82574 -16.48027 -15.92334 -15.41541 -15.13361 -14.84868 -14.58237 -14.36216 -13.85110 -13.77197 -13.39846 -13.29702 -12.97761 -12.64936 -12.25178 -11.92206 -11.76587 -11.51300 -11.47752 -11.38085 -11.31102 -11.00779 -10.91030 -10.82535 -10.72499 -10.45344 -10.33508 -10.06704 -9.66407 -9.57397 -9.27746 -8.83234 -8.44845 -6.95085 -5.79998 -3.14171 2.84283 3.33262 3.39173 3.42946 3.44096 3.78476 4.42579 4.46558 4.58240 4.61722 4.75541 4.98455 5.06499 5.12662 5.19871 5.28803 5.31774 5.45178 5.46130 5.51184 5.56030 5.63465 5.66004 5.74571 5.79918 5.93560 5.99728 6.03340 6.10331 6.18560 6.24340 6.36900 6.44026 6.53707 6.74941 7.12461 7.20277 7.33022 7.52716 7.84345 7.94018 8.51108 9.00198 9.66448 10.52882 11.36614 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030041 B = 0.003509 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.845214 B = 7978.409155 C = 8321.160821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.113 3.887 4 H 0.067 0.933 5 O -0.377 6.377 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.115 4.115 9 C -0.140 4.140 10 H 0.102 0.898 11 C 0.519 3.481 12 O -0.538 6.538 13 N -0.713 5.713 14 C 0.091 3.909 15 C 0.155 3.845 16 N -0.606 5.606 17 C -0.228 4.228 18 H 0.081 0.919 19 C -0.005 4.005 20 N -0.919 5.919 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.112 3.888 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.112 0.888 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.049 0.951 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 2.548 -17.943 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.055 3.945 4 H 0.085 0.915 5 O -0.296 6.296 6 C -0.019 4.019 7 C -0.191 4.191 8 C -0.153 4.153 9 C -0.162 4.162 10 H 0.120 0.880 11 C 0.304 3.696 12 O -0.416 6.416 13 N -0.363 5.363 14 C -0.014 4.014 15 C 0.028 3.972 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.099 0.901 19 C -0.202 4.202 20 N -0.565 5.565 21 Si 0.745 3.255 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.015 4.015 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.119 0.881 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.229 0.771 38 H 0.129 0.871 39 H 0.045 0.955 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.227 2.203 -17.169 19.615 hybrid contribution 1.366 0.362 0.666 1.562 sum -7.862 2.565 -16.503 18.459 Atomic orbital electron populations 1.21659 0.95504 1.01242 1.01782 1.21769 0.96680 0.93987 1.03670 1.21871 0.90789 0.95018 0.86785 0.91508 1.87938 1.78287 1.24361 1.39008 1.22571 0.93750 0.83573 1.01999 1.22193 0.97066 1.01716 0.98155 1.21619 1.01514 0.93724 0.98418 1.22041 0.99075 0.97987 0.97053 0.88013 1.20289 0.82992 0.78747 0.87569 1.90661 1.49736 1.49090 1.52103 1.46161 1.06824 1.61691 1.21593 1.23918 0.96482 0.98049 0.82950 1.22661 0.89877 0.90777 0.93862 1.45658 1.45897 1.32999 1.08723 1.18941 1.15545 1.11608 0.89416 0.90093 1.24815 0.99620 0.97579 0.98199 1.69818 1.38202 1.19825 1.28679 0.86166 0.79730 0.77476 0.82168 1.21135 1.21489 1.20943 1.22878 0.92231 0.97400 0.89027 0.93010 0.92878 0.92547 0.92039 0.88119 0.93162 0.88951 0.90867 0.90524 0.90630 0.90958 0.77055 0.87057 0.95512 0.90538 0.93467 0.93278 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.53 5.40 -26.73 -0.14 -1.68 16 3 C 0.11 1.39 1.78 -26.68 -0.05 1.34 16 4 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 5 O -0.38 -4.35 9.94 -35.23 -0.35 -4.70 16 6 C 0.06 0.51 6.84 37.21 0.25 0.77 16 7 C -0.15 -1.24 6.13 -26.59 -0.16 -1.40 16 8 C -0.11 -1.14 5.20 -26.48 -0.14 -1.27 16 9 C -0.14 -1.61 2.23 -91.56 -0.20 -1.82 16 10 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 11 C 0.52 7.80 6.84 -10.99 -0.08 7.72 16 12 O -0.54 -10.02 13.44 5.56 0.07 -9.95 16 13 N -0.71 -10.63 5.27 -55.34 -0.29 -10.92 16 14 C 0.09 1.74 4.43 -70.14 -0.31 1.43 16 15 C 0.15 3.67 7.32 -2.97 -0.02 3.65 16 16 N -0.61 -15.51 3.70 -178.08 -0.66 -16.17 16 17 C -0.23 -6.39 10.70 -15.06 -0.16 -6.55 16 18 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 19 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 20 N -0.92 -27.44 11.38 55.49 0.63 -26.80 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.11 2.21 8.69 -2.97 -0.03 2.19 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.45 5.65 -51.93 -0.29 1.16 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.40 4.81 8.25 -40.82 -0.34 4.47 16 38 H 0.11 2.33 7.46 -51.93 -0.39 1.95 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 2.08 7.15 -51.93 -0.37 1.70 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -32.22 341.38 -8.47 -40.69 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.23 Total: 2.74 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.77 Total: 2.88 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.32 Total: -53.90 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.28 Total: -14.64 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.22 -8.47 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030418038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds