Wall clock time and date at job start Tue Mar 31 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46793 * 2 1 4 4 H 1.08993 * 109.49356 * 305.02992 * 3 2 1 5 5 O 1.42900 * 109.47829 * 65.06058 * 3 2 1 6 6 C 1.42906 * 114.10008 * 181.13430 * 5 3 2 7 7 C 1.53093 * 109.41560 * 298.84806 * 6 5 3 8 8 C 1.53176 * 109.16451 * 57.60286 * 7 6 5 9 9 C 1.53093 * 109.47805 * 184.99782 * 3 2 1 10 10 H 1.08993 * 109.57851 * 302.34954 * 9 3 2 11 11 C 1.50704 * 109.51796 * 62.50976 * 9 3 2 12 12 O 1.21275 * 120.00338 * 359.68068 * 11 9 3 13 13 N 1.34779 * 119.99522 * 179.68547 * 11 9 3 14 14 C 1.46508 * 119.99633 * 179.97438 * 13 11 9 15 15 C 1.53490 * 114.20461 * 204.99945 * 14 13 11 16 16 N 1.47067 * 87.98606 * 220.34727 * 15 14 13 17 17 C 1.36942 * 136.06182 * 207.08941 * 16 15 14 18 18 H 1.08000 * 119.99582 * 6.89019 * 17 16 15 19 19 C 1.38800 * 120.00060 * 186.61229 * 17 16 15 20 20 N 1.31616 * 120.00547 * 7.49741 * 19 17 16 21 21 Si 1.86809 * 120.00075 * 187.49328 * 19 17 16 22 22 H 1.48498 * 109.46822 * 94.80110 * 21 19 17 23 23 H 1.48500 * 109.47246 * 214.80309 * 21 19 17 24 24 H 1.48503 * 109.46766 * 334.80240 * 21 19 17 25 25 C 1.47069 * 87.88598 * 27.34078 * 16 15 14 26 26 H 1.09004 * 109.47259 * 59.99795 * 1 2 3 27 27 H 1.08998 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47433 * 299.99583 * 1 2 3 29 29 H 1.08997 * 109.46636 * 240.00567 * 2 1 3 30 30 H 1.08993 * 109.46792 * 120.00367 * 2 1 3 31 31 H 1.08994 * 109.48605 * 178.85694 * 6 5 3 32 32 H 1.09007 * 109.48559 * 58.83354 * 6 5 3 33 33 H 1.09000 * 109.51648 * 297.69727 * 7 6 5 34 34 H 1.09005 * 109.52051 * 177.51105 * 7 6 5 35 35 H 1.09001 * 109.54120 * 183.15654 * 8 7 6 36 36 H 1.08999 * 109.54397 * 62.89130 * 8 7 6 37 37 H 0.96996 * 120.00121 * 359.97438 * 13 11 9 38 38 H 1.08999 * 113.41405 * 338.20170 * 14 13 11 39 39 H 1.09000 * 113.46873 * 105.57012 * 15 14 13 40 40 H 1.08997 * 113.52209 * 335.13076 * 15 14 13 41 41 H 0.97003 * 120.00655 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.46314 * 87.43583 * 25 16 15 43 43 H 1.09003 * 113.47141 * 217.88225 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9820 -0.8413 5 8 1.6632 2.0811 1.2216 6 6 2.0699 3.4479 1.3152 7 6 3.5969 3.5305 1.2421 8 6 4.0733 2.8886 -0.0645 9 6 3.5657 1.4446 -0.1257 10 1 4.0004 0.8707 0.6925 11 6 3.9633 0.8265 -1.4414 12 8 3.1113 0.4183 -2.2018 13 7 5.2660 0.7273 -1.7729 14 6 5.6526 0.1259 -3.0517 15 6 7.0664 -0.4715 -3.0643 16 7 7.2300 0.0770 -4.4190 17 6 7.9661 -0.2407 -5.5292 18 1 8.5421 -1.1540 -5.5520 19 6 7.9675 0.6083 -6.6273 20 7 7.3839 1.7855 -6.5498 21 14 8.7976 0.0802 -8.2152 22 1 7.7897 -0.5229 -9.1238 23 1 9.4100 1.2635 -8.8710 24 1 9.8531 -0.9198 -7.9131 25 6 6.2598 1.1205 -4.0548 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7282 3.8649 2.2625 32 1 1.6354 4.0138 0.4911 33 1 4.0313 2.9990 2.0888 34 1 3.9068 4.5753 1.2689 35 1 5.1628 2.8937 -0.0972 36 1 3.6791 3.4500 -0.9115 37 1 5.9474 1.0541 -1.1649 38 1 4.8877 -0.5270 -3.4721 39 1 7.0775 -1.5610 -3.0328 40 1 7.7352 -0.0219 -2.3304 41 1 7.3845 2.3787 -7.3173 42 1 6.7153 1.9905 -3.5816 43 1 5.5837 1.3874 -4.8671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030418039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:32 Heat of formation + Delta-G solvation = -39.770402 kcal Electronic energy + Delta-G solvation = -22898.946458 eV Core-core repulsion = 19559.554674 eV Total energy + Delta-G solvation = -3339.391784 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.52888 -38.88019 -37.58161 -34.35595 -33.66729 -33.31423 -31.85826 -30.12735 -27.53602 -25.46575 -24.76478 -24.66058 -22.97709 -21.35912 -21.06590 -19.96370 -19.62760 -17.27067 -16.79025 -16.50864 -15.93608 -15.44749 -15.14556 -14.83236 -14.60295 -14.38135 -13.89016 -13.78192 -13.40574 -13.31050 -12.99536 -12.65943 -12.26208 -12.01232 -11.78045 -11.52873 -11.49954 -11.38411 -11.32206 -11.01331 -10.99223 -10.82595 -10.76716 -10.43147 -10.34328 -10.10750 -9.67620 -9.48389 -9.30466 -8.83216 -8.41881 -6.97674 -5.84240 -3.16720 2.81934 3.30896 3.37943 3.42330 3.44150 3.76932 4.41546 4.45606 4.57298 4.60673 4.74691 4.97763 5.07028 5.12702 5.23900 5.27984 5.31021 5.40451 5.45312 5.50280 5.53333 5.62681 5.65369 5.73786 5.79083 5.92332 5.97363 6.02533 6.09560 6.18630 6.23506 6.35833 6.41684 6.52281 6.73442 7.11636 7.13083 7.29923 7.46223 7.82013 7.90024 8.48797 8.96777 9.63462 10.55292 11.34187 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029924 B = 0.003489 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.472825 B = 8022.621336 C = 8396.164587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.113 3.887 4 H 0.067 0.933 5 O -0.377 6.377 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.115 4.115 9 C -0.139 4.139 10 H 0.102 0.898 11 C 0.519 3.481 12 O -0.538 6.538 13 N -0.709 5.709 14 C 0.085 3.915 15 C 0.110 3.890 16 N -0.603 5.603 17 C -0.223 4.223 18 H 0.084 0.916 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.915 3.085 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.152 3.848 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.101 0.899 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.397 0.603 38 H 0.117 0.883 39 H 0.046 0.954 40 H 0.033 0.967 41 H 0.255 0.745 42 H 0.030 0.970 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.252 2.290 17.803 20.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.055 3.945 4 H 0.085 0.915 5 O -0.296 6.296 6 C -0.019 4.019 7 C -0.191 4.191 8 C -0.153 4.153 9 C -0.161 4.161 10 H 0.120 0.880 11 C 0.305 3.695 12 O -0.416 6.416 13 N -0.359 5.359 14 C -0.020 4.020 15 C -0.018 4.018 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.102 0.898 19 C -0.202 4.202 20 N -0.562 5.562 21 Si 0.745 3.255 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.025 3.975 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.134 0.866 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.048 0.952 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.807 1.936 17.025 19.743 hybrid contribution 1.240 0.342 -0.711 1.469 sum -8.567 2.278 16.315 18.567 Atomic orbital electron populations 1.21661 0.95505 1.01246 1.01779 1.21772 0.96680 0.93982 1.03688 1.21870 0.90773 0.95032 0.86783 0.91515 1.87940 1.78311 1.24392 1.38940 1.22575 0.93758 0.83564 1.02008 1.22192 0.97063 1.01728 0.98138 1.21601 1.01553 0.93725 0.98442 1.22015 0.99109 0.98013 0.96992 0.87953 1.20287 0.82917 0.78718 0.87588 1.90658 1.49674 1.48941 1.52326 1.46020 1.06906 1.61586 1.21421 1.23673 0.96621 0.98360 0.83324 1.22710 0.92289 0.97613 0.89151 1.45369 1.49426 1.31031 1.07078 1.18919 1.22715 1.03775 0.89590 0.89844 1.24857 1.00799 0.95742 0.98788 1.69863 1.48168 1.08175 1.30038 0.86063 0.78803 0.77399 0.83248 1.21375 1.21635 1.20456 1.22442 0.90216 0.91119 0.93697 0.92893 0.93007 0.92538 0.88106 0.92021 0.88942 0.93162 0.90846 0.90498 0.90619 0.90952 0.76969 0.86564 0.93618 0.94957 0.93500 0.95193 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.81 37.16 0.36 -1.24 16 2 C -0.12 -1.52 5.40 -26.73 -0.14 -1.67 16 3 C 0.11 1.38 1.78 -26.68 -0.05 1.33 16 4 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16 5 O -0.38 -4.31 9.94 -35.23 -0.35 -4.66 16 6 C 0.06 0.51 6.84 37.21 0.25 0.76 16 7 C -0.15 -1.23 6.14 -26.59 -0.16 -1.39 16 8 C -0.12 -1.13 5.18 -26.55 -0.14 -1.27 16 9 C -0.14 -1.59 2.23 -91.63 -0.20 -1.80 16 10 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.52 7.73 6.84 -10.98 -0.08 7.65 16 12 O -0.54 -9.91 13.43 5.56 0.07 -9.84 16 13 N -0.71 -10.49 5.29 -53.48 -0.28 -10.78 16 14 C 0.09 1.63 4.62 -67.68 -0.31 1.31 16 15 C 0.11 2.18 8.44 -8.50 -0.07 2.11 16 16 N -0.60 -15.48 3.76 -184.61 -0.69 -16.18 16 17 C -0.22 -6.26 10.73 -15.06 -0.16 -6.42 16 18 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 19 C 0.00 -0.13 5.49 -17.44 -0.10 -0.22 16 20 N -0.92 -27.43 11.84 55.49 0.66 -26.77 16 21 Si 0.92 22.09 29.56 -169.99 -5.02 17.07 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.15 3.60 7.04 -8.36 -0.06 3.54 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 29 H 0.10 1.44 5.64 -51.93 -0.29 1.15 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.67 7.67 -51.93 -0.40 0.27 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.40 4.78 8.24 -40.82 -0.34 4.44 16 38 H 0.12 2.41 7.45 -51.93 -0.39 2.02 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.68 7.61 -51.93 -0.40 1.29 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.34 342.04 -8.57 -40.91 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.25 Total: 2.39 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.85 Total: 2.70 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.32 Total: -53.72 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.28 Total: -14.50 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.34 -8.57 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030418039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.140 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds