Wall clock time and date at job start Tue Mar 31 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46793 * 2 1 4 4 H 1.08993 * 109.49356 * 305.02992 * 3 2 1 5 5 O 1.42900 * 109.47829 * 65.06058 * 3 2 1 6 6 C 1.42906 * 114.10008 * 181.13430 * 5 3 2 7 7 C 1.53093 * 109.41560 * 298.84806 * 6 5 3 8 8 C 1.53176 * 109.16451 * 57.60286 * 7 6 5 9 9 C 1.53093 * 109.47805 * 184.99782 * 3 2 1 10 10 H 1.08993 * 109.57851 * 302.34954 * 9 3 2 11 11 C 1.50704 * 109.51796 * 62.50976 * 9 3 2 12 12 O 1.21275 * 120.00338 * 359.68068 * 11 9 3 13 13 N 1.34779 * 119.99522 * 179.68547 * 11 9 3 14 14 C 1.46508 * 119.99633 * 179.97438 * 13 11 9 15 15 C 1.53490 * 114.20461 * 204.99945 * 14 13 11 16 16 N 1.47067 * 87.98606 * 220.34727 * 15 14 13 17 17 C 1.36942 * 136.06182 * 207.08941 * 16 15 14 18 18 H 1.08000 * 119.99582 * 6.89019 * 17 16 15 19 19 C 1.38800 * 120.00060 * 186.61229 * 17 16 15 20 20 N 1.31616 * 120.00547 * 7.49741 * 19 17 16 21 21 Si 1.86809 * 120.00075 * 187.49328 * 19 17 16 22 22 H 1.48498 * 109.46822 * 94.80110 * 21 19 17 23 23 H 1.48500 * 109.47246 * 214.80309 * 21 19 17 24 24 H 1.48503 * 109.46766 * 334.80240 * 21 19 17 25 25 C 1.47069 * 87.88598 * 27.34078 * 16 15 14 26 26 H 1.09004 * 109.47259 * 59.99795 * 1 2 3 27 27 H 1.08998 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47433 * 299.99583 * 1 2 3 29 29 H 1.08997 * 109.46636 * 240.00567 * 2 1 3 30 30 H 1.08993 * 109.46792 * 120.00367 * 2 1 3 31 31 H 1.08994 * 109.48605 * 178.85694 * 6 5 3 32 32 H 1.09007 * 109.48559 * 58.83354 * 6 5 3 33 33 H 1.09000 * 109.51648 * 297.69727 * 7 6 5 34 34 H 1.09005 * 109.52051 * 177.51105 * 7 6 5 35 35 H 1.09001 * 109.54120 * 183.15654 * 8 7 6 36 36 H 1.08999 * 109.54397 * 62.89130 * 8 7 6 37 37 H 0.96996 * 120.00121 * 359.97438 * 13 11 9 38 38 H 1.08999 * 113.41405 * 338.20170 * 14 13 11 39 39 H 1.09000 * 113.46873 * 105.57012 * 15 14 13 40 40 H 1.08997 * 113.52209 * 335.13076 * 15 14 13 41 41 H 0.97003 * 120.00655 * 180.02562 * 20 19 17 42 42 H 1.09002 * 113.46314 * 87.43583 * 25 16 15 43 43 H 1.09003 * 113.47141 * 217.88225 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9820 -0.8413 5 8 1.6632 2.0811 1.2216 6 6 2.0699 3.4479 1.3152 7 6 3.5969 3.5305 1.2421 8 6 4.0733 2.8886 -0.0645 9 6 3.5657 1.4446 -0.1257 10 1 4.0004 0.8707 0.6925 11 6 3.9633 0.8265 -1.4414 12 8 3.1113 0.4183 -2.2018 13 7 5.2660 0.7273 -1.7729 14 6 5.6526 0.1259 -3.0517 15 6 7.0664 -0.4715 -3.0643 16 7 7.2300 0.0770 -4.4190 17 6 7.9661 -0.2407 -5.5292 18 1 8.5421 -1.1540 -5.5520 19 6 7.9675 0.6083 -6.6273 20 7 7.3839 1.7855 -6.5498 21 14 8.7976 0.0802 -8.2152 22 1 7.7897 -0.5229 -9.1238 23 1 9.4100 1.2635 -8.8710 24 1 9.8531 -0.9198 -7.9131 25 6 6.2598 1.1205 -4.0548 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7282 3.8649 2.2625 32 1 1.6354 4.0138 0.4911 33 1 4.0313 2.9990 2.0888 34 1 3.9068 4.5753 1.2689 35 1 5.1628 2.8937 -0.0972 36 1 3.6791 3.4500 -0.9115 37 1 5.9474 1.0541 -1.1649 38 1 4.8877 -0.5270 -3.4721 39 1 7.0775 -1.5610 -3.0328 40 1 7.7352 -0.0219 -2.3304 41 1 7.3845 2.3787 -7.3173 42 1 6.7153 1.9905 -3.5816 43 1 5.5837 1.3874 -4.8671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030418039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:31 Heat of formation + Delta-G solvation = -61.897364 kcal Electronic energy + Delta-G solvation = -22899.905955 eV Core-core repulsion = 19559.554674 eV Total energy + Delta-G solvation = -3340.351281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65069 -40.21304 -39.01461 -35.47323 -34.70721 -34.62367 -33.65802 -31.04240 -29.43712 -26.45546 -26.28232 -26.01071 -24.53351 -22.34357 -22.04426 -21.44316 -20.92126 -18.79579 -18.36046 -17.60526 -17.11962 -16.95586 -16.41116 -16.12245 -15.81909 -15.62121 -15.39145 -14.78562 -14.60812 -14.30588 -14.20080 -13.99380 -13.64388 -13.29727 -13.19248 -13.09246 -12.89451 -12.71826 -12.64223 -12.35377 -12.23501 -12.12466 -11.99400 -11.80659 -11.70292 -11.38810 -11.19931 -10.90868 -10.70482 -10.35289 -9.90537 -9.01813 -7.97926 -5.31539 1.44425 1.47497 1.56082 1.60196 2.08267 2.47466 2.88079 3.26406 3.41572 3.52972 3.69424 3.75064 3.80455 4.01755 4.14572 4.16153 4.27039 4.32452 4.40066 4.50439 4.54444 4.57739 4.73222 4.77081 4.84463 4.87816 4.91794 4.95103 5.03188 5.07859 5.13759 5.14584 5.20428 5.28440 5.35265 5.41437 5.48848 5.69038 5.84010 6.28079 6.59207 6.83537 7.28220 7.53553 8.52190 9.21069 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029924 B = 0.003489 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.472825 B = 8022.621336 C = 8396.164587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.116 3.884 4 H 0.045 0.955 5 O -0.384 6.384 6 C 0.048 3.952 7 C -0.146 4.146 8 C -0.117 4.117 9 C -0.128 4.128 10 H 0.126 0.874 11 C 0.519 3.481 12 O -0.576 6.576 13 N -0.697 5.697 14 C 0.118 3.882 15 C 0.118 3.882 16 N -0.637 5.637 17 C -0.233 4.233 18 H 0.092 0.908 19 C -0.067 4.067 20 N -0.954 5.954 21 Si 0.983 3.017 22 H -0.288 1.288 23 H -0.293 1.293 24 H -0.262 1.262 25 C 0.151 3.849 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.046 0.954 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.415 0.585 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.249 0.751 42 H 0.028 0.972 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.476 1.955 20.096 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.058 3.942 4 H 0.063 0.937 5 O -0.303 6.303 6 C -0.028 4.028 7 C -0.183 4.183 8 C -0.155 4.155 9 C -0.149 4.149 10 H 0.144 0.856 11 C 0.306 3.694 12 O -0.455 6.455 13 N -0.349 5.349 14 C 0.011 3.989 15 C -0.007 4.007 16 N -0.364 5.364 17 C -0.361 4.361 18 H 0.110 0.890 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.811 3.189 22 H -0.215 1.215 23 H -0.220 1.220 24 H -0.186 1.186 25 C 0.024 3.976 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.252 0.748 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -9.018 1.590 19.387 21.441 hybrid contribution 0.933 0.463 -1.347 1.702 sum -8.086 2.053 18.040 19.875 Atomic orbital electron populations 1.21632 0.94861 1.01839 1.01536 1.21719 0.97351 0.94083 1.03016 1.21711 0.91113 0.94768 0.86610 0.93739 1.87928 1.78617 1.25749 1.38009 1.22835 0.94622 0.82238 1.03099 1.22165 0.96190 1.02810 0.97138 1.21659 1.02368 0.92307 0.99129 1.21977 0.98751 0.99142 0.95040 0.85644 1.20952 0.82185 0.77756 0.88477 1.90659 1.50687 1.50343 1.53856 1.45768 1.07685 1.61378 1.20049 1.22917 0.95988 0.96037 0.83979 1.22818 0.92551 0.98533 0.86840 1.45685 1.49652 1.32030 1.08995 1.19367 1.22098 1.03876 0.90730 0.89029 1.25747 1.02147 0.95931 1.02164 1.70048 1.50186 1.09423 1.30580 0.84992 0.77984 0.77046 0.78894 1.21520 1.22008 1.18576 1.22400 0.89723 0.91872 0.93595 0.93854 0.92036 0.91980 0.90402 0.90867 0.86707 0.93529 0.89668 0.88677 0.89198 0.92579 0.74838 0.88325 0.92110 0.92088 0.94181 0.95440 0.96369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.81 71.98 0.71 -2.37 16 2 C -0.12 -2.98 5.40 30.60 0.17 -2.81 16 3 C 0.12 2.73 1.78 30.63 0.05 2.79 16 4 H 0.04 1.23 8.04 -2.39 -0.02 1.21 16 5 O -0.38 -8.04 9.94 -148.98 -1.48 -9.52 16 6 C 0.05 0.73 6.84 72.01 0.49 1.23 16 7 C -0.15 -1.86 6.14 30.68 0.19 -1.67 16 8 C -0.12 -2.03 5.18 30.71 0.16 -1.87 16 9 C -0.13 -2.68 2.23 -11.45 -0.03 -2.71 16 10 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 11 C 0.52 15.06 6.84 87.66 0.60 15.66 16 12 O -0.58 -21.61 13.43 -3.01 -0.04 -21.65 16 13 N -0.70 -19.65 5.29 -441.51 -2.34 -21.98 16 14 C 0.12 4.44 4.62 45.55 0.21 4.65 16 15 C 0.12 4.51 8.44 83.18 0.70 5.22 16 16 N -0.64 -32.80 3.76 -737.98 -2.78 -35.57 16 17 C -0.23 -13.11 10.73 84.03 0.90 -12.21 16 18 H 0.09 4.85 7.84 -2.91 -0.02 4.83 16 19 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 20 N -0.95 -58.82 11.84 21.65 0.26 -58.57 16 21 Si 0.98 45.90 29.56 68.60 2.03 47.92 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 C 0.15 7.32 7.04 83.27 0.59 7.91 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 1.27 7.83 -2.38 -0.02 1.25 16 29 H 0.08 2.25 5.64 -2.39 -0.01 2.24 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.09 1.32 7.67 -2.39 -0.02 1.30 16 36 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.41 8.84 8.24 -92.71 -0.76 8.08 16 38 H 0.10 4.15 7.45 -2.39 -0.02 4.13 16 39 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.06 2.04 8.13 -2.39 -0.02 2.03 16 41 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 42 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.02 1.01 7.61 -2.39 -0.02 1.00 16 Total: -1.00 -71.95 342.04 1.08 -70.87 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.22 Total: 18.07 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.21 Total: 10.44 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.86 Total: -116.12 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -1.52 Total: -31.18 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -71.95 1.08 -70.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030418039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.971 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds