Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46762 * 2 1 4 4 H 1.08991 * 109.48469 * 55.02353 * 3 2 1 5 5 O 1.42908 * 109.48210 * 294.99761 * 3 2 1 6 6 C 1.42894 * 114.09865 * 178.85988 * 5 3 2 7 7 C 1.53096 * 109.41507 * 61.16179 * 6 5 3 8 8 C 1.53181 * 109.16280 * 302.38730 * 7 6 5 9 9 C 1.53100 * 109.47994 * 175.05882 * 3 2 1 10 10 H 1.09005 * 109.51694 * 297.55828 * 9 3 2 11 11 C 1.50699 * 109.52214 * 57.68210 * 9 3 2 12 12 O 1.21285 * 120.00028 * 0.02562 * 11 9 3 13 13 N 1.34775 * 119.99647 * 180.02562 * 11 9 3 14 14 C 1.46504 * 119.99643 * 180.02562 * 13 11 9 15 15 C 1.53944 * 113.74009 * 253.73771 * 14 13 11 16 16 N 1.47808 * 86.04003 * 222.08710 * 15 14 13 17 17 C 1.36932 * 134.46058 * 204.65268 * 16 15 14 18 18 H 1.08000 * 120.00116 * 179.86269 * 17 16 15 19 19 C 1.38817 * 119.99843 * 359.85486 * 17 16 15 20 20 N 1.31618 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47173 * 90.00360 * 21 19 17 23 23 H 1.48497 * 109.47523 * 210.00666 * 21 19 17 24 24 H 1.48508 * 109.47029 * 330.00455 * 21 19 17 25 25 C 1.47580 * 91.04904 * 24.54945 * 16 15 14 26 26 H 1.09000 * 109.47253 * 60.00380 * 1 2 3 27 27 H 1.09008 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47497 * 299.99959 * 1 2 3 29 29 H 1.09004 * 109.47497 * 240.00041 * 2 1 3 30 30 H 1.09000 * 109.47253 * 119.99620 * 2 1 3 31 31 H 1.08997 * 109.48587 * 301.17794 * 6 5 3 32 32 H 1.09005 * 109.49175 * 181.14792 * 6 5 3 33 33 H 1.08998 * 109.52300 * 62.29682 * 7 6 5 34 34 H 1.09004 * 109.51858 * 182.48409 * 7 6 5 35 35 H 1.09000 * 109.54215 * 176.84680 * 8 7 6 36 36 H 1.09003 * 109.54032 * 297.11816 * 8 7 6 37 37 H 0.97000 * 119.99903 * 0.02562 * 13 11 9 38 38 H 1.09000 * 112.94382 * 25.33262 * 14 13 11 39 39 H 1.08999 * 113.77182 * 336.35515 * 15 14 13 40 40 H 1.09005 * 113.76896 * 107.74505 * 15 14 13 41 41 H 0.97006 * 119.99691 * 180.02562 * 20 19 17 42 42 H 1.09006 * 113.76937 * 221.15150 * 25 16 15 43 43 H 1.09003 * 113.87258 * 89.76631 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8419 5 8 1.6619 2.0816 -1.2211 6 6 2.0685 3.4483 -1.3144 7 6 3.5955 3.5310 -1.2429 8 6 4.0733 2.8886 0.0631 9 6 3.5658 1.4447 0.1243 10 1 3.8543 0.9962 1.0750 11 6 4.1645 0.6519 -1.0089 12 8 3.4426 0.1358 -1.8356 13 7 5.5021 0.5164 -1.1035 14 6 6.0841 -0.2539 -2.2054 15 6 6.6316 -1.6282 -1.7796 16 7 7.7811 -1.3285 -2.6590 17 6 8.6973 -2.0908 -3.3332 18 1 9.4623 -1.6147 -3.9287 19 6 8.6430 -3.4754 -3.2511 20 7 7.7105 -4.0555 -2.5256 21 14 9.8933 -4.5154 -4.1701 22 1 11.0712 -4.7581 -3.2990 23 1 9.2779 -5.8141 -4.5438 24 1 10.3247 -3.8005 -5.3982 25 6 7.5434 0.1215 -2.5210 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6349 4.0138 -0.4896 32 1 1.7258 3.8659 -2.2612 33 1 4.0292 2.9998 -2.0901 34 1 3.9053 4.5758 -1.2696 35 1 5.1628 2.8938 0.0947 36 1 3.6798 3.4497 0.9107 37 1 6.0793 0.9288 -0.4420 38 1 5.4405 -0.2910 -3.0843 39 1 6.8912 -1.6895 -0.7227 40 1 6.0243 -2.4674 -2.1189 41 1 7.6728 -5.0231 -2.4679 42 1 7.6628 0.6768 -3.4514 43 1 8.0708 0.5772 -1.6830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030418040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = -36.114499 kcal Electronic energy + Delta-G solvation = -23293.667606 eV Core-core repulsion = 19954.434354 eV Total energy + Delta-G solvation = -3339.233252 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.59376 -38.55097 -37.15949 -34.32651 -33.65469 -33.12240 -31.70237 -30.03078 -27.43425 -25.41096 -24.81950 -24.50757 -22.96997 -21.53394 -21.28574 -19.69566 -19.15694 -16.90554 -16.78518 -16.35045 -15.85627 -15.68605 -15.11937 -14.81792 -14.53608 -14.00084 -13.85178 -13.45085 -13.41018 -13.28917 -12.80286 -12.49190 -12.39960 -11.90218 -11.72954 -11.59922 -11.42609 -11.39553 -11.23958 -10.89921 -10.82256 -10.74457 -10.61745 -10.37858 -10.28553 -10.02053 -9.54290 -9.49208 -9.04965 -8.80574 -8.34619 -6.91656 -5.77178 -3.11133 3.01832 3.38836 3.43119 3.46655 3.51695 3.85714 4.45100 4.51140 4.59213 4.66447 4.80975 5.00508 5.12551 5.17612 5.26129 5.29111 5.41931 5.43850 5.48585 5.51939 5.57699 5.62670 5.66638 5.76521 5.81837 6.00720 6.02191 6.06248 6.10068 6.23192 6.36271 6.41935 6.55537 6.61362 6.87459 7.24584 7.32528 7.39582 7.57124 7.95137 7.97853 8.68773 9.02923 9.69280 10.56200 11.39555 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.003870 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.133719 B = 7233.490922 C = 7836.431212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.135 4.135 3 C 0.117 3.883 4 H 0.057 0.943 5 O -0.357 6.357 6 C 0.060 3.940 7 C -0.160 4.160 8 C -0.112 4.112 9 C -0.146 4.146 10 H 0.102 0.898 11 C 0.519 3.481 12 O -0.520 6.520 13 N -0.719 5.719 14 C 0.094 3.906 15 C 0.155 3.845 16 N -0.607 5.607 17 C -0.226 4.226 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.112 3.888 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.393 0.607 38 H 0.109 0.891 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.833 15.835 8.560 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.059 3.941 4 H 0.075 0.925 5 O -0.276 6.276 6 C -0.017 4.017 7 C -0.197 4.197 8 C -0.149 4.149 9 C -0.168 4.168 10 H 0.120 0.880 11 C 0.304 3.696 12 O -0.396 6.396 13 N -0.370 5.370 14 C -0.011 4.011 15 C 0.028 3.972 16 N -0.334 5.334 17 C -0.354 4.354 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.565 5.565 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.015 4.015 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.226 0.774 38 H 0.127 0.873 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -11.310 15.037 7.670 20.319 hybrid contribution 1.406 -0.202 0.334 1.459 sum -9.904 14.835 8.004 19.551 Atomic orbital electron populations 1.21671 0.95759 1.01248 1.01462 1.21893 0.96227 0.94396 1.04732 1.21843 0.90432 0.94896 0.86978 0.92512 1.88078 1.77678 1.23575 1.38228 1.22523 0.93524 0.84032 1.01652 1.22221 0.97478 1.01443 0.98594 1.21573 1.01374 0.93694 0.98303 1.22149 0.98333 0.96855 0.99463 0.87998 1.20188 0.82500 0.80498 0.86407 1.90644 1.59549 1.47772 1.41614 1.46166 1.06472 1.54500 1.29816 1.23828 0.93499 0.93719 0.90033 1.22701 0.87503 0.93849 0.93134 1.45719 1.34151 0.99439 1.54055 1.18987 1.06631 0.87792 1.21972 0.90092 1.24812 0.99005 0.96311 1.00136 1.69834 1.34474 1.09101 1.43090 0.86098 0.80373 0.79929 0.79212 1.21590 1.21541 1.20532 1.22861 0.91653 0.88802 0.98165 0.92101 0.92971 0.93770 0.87380 0.91525 0.93684 0.89123 0.90657 0.90812 0.90848 0.90965 0.77367 0.87290 0.95525 0.90578 0.93536 0.93407 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.81 37.15 0.36 -1.27 16 2 C -0.14 -1.75 5.21 -26.73 -0.14 -1.89 16 3 C 0.12 1.39 2.22 -26.68 -0.06 1.33 16 4 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 5 O -0.36 -4.88 9.00 -51.94 -0.47 -5.35 16 6 C 0.06 0.62 6.84 37.21 0.25 0.87 16 7 C -0.16 -1.57 5.88 -26.59 -0.16 -1.73 16 8 C -0.11 -1.00 5.46 -26.55 -0.14 -1.14 16 9 C -0.15 -1.65 2.60 -91.63 -0.24 -1.89 16 10 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 11 C 0.52 8.02 5.64 -10.99 -0.06 7.96 16 12 O -0.52 -10.13 12.54 -11.15 -0.14 -10.27 16 13 N -0.72 -10.99 5.25 -55.33 -0.29 -11.28 16 14 C 0.09 1.85 4.40 -70.14 -0.31 1.54 16 15 C 0.15 3.73 7.33 -2.84 -0.02 3.71 16 16 N -0.61 -15.74 3.70 -177.87 -0.66 -16.40 16 17 C -0.23 -6.42 10.70 -15.06 -0.16 -6.58 16 18 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -27.73 11.39 55.49 0.63 -27.10 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C 0.11 2.26 8.69 -2.97 -0.03 2.23 16 26 H 0.06 0.75 7.82 -51.93 -0.41 0.34 16 27 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.11 1.79 5.46 -51.93 -0.28 1.51 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.95 7.39 -51.93 -0.38 0.56 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.60 7.51 -51.93 -0.39 0.21 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.39 4.90 8.12 -40.82 -0.33 4.57 16 38 H 0.11 2.36 7.51 -51.93 -0.39 1.97 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 2.10 7.17 -51.93 -0.37 1.73 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -33.35 337.82 -8.82 -42.17 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.17 Total: 2.96 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.79 Total: 2.88 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.32 Total: -54.78 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.61 Total: -15.62 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.35 -8.82 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030418040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.057 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds