Wall clock time and date at job start Tue Mar 31 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.46762 * 2 1 4 4 H 1.08991 * 109.48469 * 55.02353 * 3 2 1 5 5 O 1.42908 * 109.48210 * 294.99761 * 3 2 1 6 6 C 1.42894 * 114.09865 * 178.85988 * 5 3 2 7 7 C 1.53096 * 109.41507 * 61.16179 * 6 5 3 8 8 C 1.53181 * 109.16280 * 302.38730 * 7 6 5 9 9 C 1.53100 * 109.47994 * 175.05882 * 3 2 1 10 10 H 1.09005 * 109.51694 * 297.55828 * 9 3 2 11 11 C 1.50699 * 109.52214 * 57.68210 * 9 3 2 12 12 O 1.21285 * 120.00028 * 0.02562 * 11 9 3 13 13 N 1.34775 * 119.99647 * 180.02562 * 11 9 3 14 14 C 1.46504 * 119.99643 * 180.02562 * 13 11 9 15 15 C 1.53944 * 113.74009 * 253.73771 * 14 13 11 16 16 N 1.47808 * 86.04003 * 222.08710 * 15 14 13 17 17 C 1.36932 * 134.46058 * 204.65268 * 16 15 14 18 18 H 1.08000 * 120.00116 * 179.86269 * 17 16 15 19 19 C 1.38817 * 119.99843 * 359.85486 * 17 16 15 20 20 N 1.31618 * 119.99810 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00101 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47173 * 90.00360 * 21 19 17 23 23 H 1.48497 * 109.47523 * 210.00666 * 21 19 17 24 24 H 1.48508 * 109.47029 * 330.00455 * 21 19 17 25 25 C 1.47580 * 91.04904 * 24.54945 * 16 15 14 26 26 H 1.09000 * 109.47253 * 60.00380 * 1 2 3 27 27 H 1.09008 * 109.47146 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47497 * 299.99959 * 1 2 3 29 29 H 1.09004 * 109.47497 * 240.00041 * 2 1 3 30 30 H 1.09000 * 109.47253 * 119.99620 * 2 1 3 31 31 H 1.08997 * 109.48587 * 301.17794 * 6 5 3 32 32 H 1.09005 * 109.49175 * 181.14792 * 6 5 3 33 33 H 1.08998 * 109.52300 * 62.29682 * 7 6 5 34 34 H 1.09004 * 109.51858 * 182.48409 * 7 6 5 35 35 H 1.09000 * 109.54215 * 176.84680 * 8 7 6 36 36 H 1.09003 * 109.54032 * 297.11816 * 8 7 6 37 37 H 0.97000 * 119.99903 * 0.02562 * 13 11 9 38 38 H 1.09000 * 112.94382 * 25.33262 * 14 13 11 39 39 H 1.08999 * 113.77182 * 336.35515 * 15 14 13 40 40 H 1.09005 * 113.76896 * 107.74505 * 15 14 13 41 41 H 0.97006 * 119.99691 * 180.02562 * 20 19 17 42 42 H 1.09006 * 113.76937 * 221.15150 * 25 16 15 43 43 H 1.09003 * 113.87258 * 89.76631 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6057 1.9816 0.8419 5 8 1.6619 2.0816 -1.2211 6 6 2.0685 3.4483 -1.3144 7 6 3.5955 3.5310 -1.2429 8 6 4.0733 2.8886 0.0631 9 6 3.5658 1.4447 0.1243 10 1 3.8543 0.9962 1.0750 11 6 4.1645 0.6519 -1.0089 12 8 3.4426 0.1358 -1.8356 13 7 5.5021 0.5164 -1.1035 14 6 6.0841 -0.2539 -2.2054 15 6 6.6316 -1.6282 -1.7796 16 7 7.7811 -1.3285 -2.6590 17 6 8.6973 -2.0908 -3.3332 18 1 9.4623 -1.6147 -3.9287 19 6 8.6430 -3.4754 -3.2511 20 7 7.7105 -4.0555 -2.5256 21 14 9.8933 -4.5154 -4.1701 22 1 11.0712 -4.7581 -3.2990 23 1 9.2779 -5.8141 -4.5438 24 1 10.3247 -3.8005 -5.3982 25 6 7.5434 0.1215 -2.5210 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6349 4.0138 -0.4896 32 1 1.7258 3.8659 -2.2612 33 1 4.0292 2.9998 -2.0901 34 1 3.9053 4.5758 -1.2696 35 1 5.1628 2.8938 0.0947 36 1 3.6798 3.4497 0.9107 37 1 6.0793 0.9288 -0.4420 38 1 5.4405 -0.2910 -3.0843 39 1 6.8912 -1.6895 -0.7227 40 1 6.0243 -2.4674 -2.1189 41 1 7.6728 -5.0231 -2.4679 42 1 7.6628 0.6768 -3.4514 43 1 8.0708 0.5772 -1.6830 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030418040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:34 Heat of formation + Delta-G solvation = -58.934307 kcal Electronic energy + Delta-G solvation = -23294.657147 eV Core-core repulsion = 19954.434354 eV Total energy + Delta-G solvation = -3340.222793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68190 -39.99554 -38.58878 -35.43426 -34.66160 -34.57565 -33.48467 -30.95226 -29.37445 -26.63340 -26.22212 -25.80144 -24.43966 -22.67516 -22.23648 -21.29660 -20.41615 -18.79095 -17.92603 -17.48392 -17.04804 -16.93087 -16.76690 -16.07880 -15.75740 -15.51549 -15.09578 -14.66142 -14.47288 -14.37575 -14.14970 -13.69483 -13.51911 -13.23826 -13.22469 -13.18726 -12.84469 -12.62669 -12.56070 -12.50074 -12.26490 -12.04263 -11.94527 -11.67736 -11.53912 -11.43168 -11.20931 -10.90335 -10.44227 -10.18436 -9.84475 -8.98897 -7.93464 -5.29018 1.44312 1.47268 1.56005 1.80667 2.22186 2.50075 3.00517 3.24714 3.38809 3.61268 3.76252 3.87078 3.88211 4.07007 4.11169 4.30156 4.32426 4.38663 4.48192 4.52872 4.53122 4.66948 4.72598 4.78462 4.81906 4.88953 4.93183 4.94883 5.06473 5.15601 5.18576 5.20093 5.24037 5.32388 5.43862 5.46514 5.58711 5.78092 5.88430 6.51065 6.73138 6.86586 7.47536 7.56573 8.49890 9.23410 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.003870 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.133719 B = 7233.490922 C = 7836.431212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.114 3.886 4 H 0.089 0.911 5 O -0.391 6.391 6 C 0.052 3.948 7 C -0.159 4.159 8 C -0.108 4.108 9 C -0.139 4.139 10 H 0.128 0.872 11 C 0.515 3.485 12 O -0.565 6.565 13 N -0.707 5.707 14 C 0.124 3.876 15 C 0.154 3.846 16 N -0.639 5.639 17 C -0.237 4.237 18 H 0.090 0.910 19 C -0.069 4.069 20 N -0.956 5.956 21 Si 0.983 3.017 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.265 1.265 25 C 0.123 3.877 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.412 0.588 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.029 0.971 41 H 0.248 0.752 42 H 0.061 0.939 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.216 18.497 10.267 23.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.056 3.944 4 H 0.107 0.893 5 O -0.311 6.311 6 C -0.024 4.024 7 C -0.196 4.196 8 C -0.145 4.145 9 C -0.161 4.161 10 H 0.146 0.854 11 C 0.302 3.698 12 O -0.443 6.443 13 N -0.360 5.360 14 C 0.017 3.983 15 C 0.027 3.973 16 N -0.366 5.366 17 C -0.366 4.366 18 H 0.108 0.892 19 C -0.261 4.261 20 N -0.605 5.605 21 Si 0.811 3.189 22 H -0.209 1.209 23 H -0.223 1.223 24 H -0.190 1.190 25 C -0.003 4.003 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.058 0.942 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.248 0.752 38 H 0.102 0.898 39 H 0.044 0.956 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.679 17.772 9.401 22.766 hybrid contribution 1.141 -0.973 -0.205 1.513 sum -9.539 16.799 9.196 21.395 Atomic orbital electron populations 1.21618 0.94765 1.01398 1.01821 1.21866 0.97237 0.95422 1.03130 1.21970 0.90803 0.94193 0.87470 0.89302 1.88045 1.78241 1.25392 1.39379 1.22724 0.94067 0.82836 1.02775 1.22214 0.96955 1.02576 0.97893 1.21651 1.02237 0.91801 0.98809 1.22219 0.97791 0.97961 0.98101 0.85421 1.21086 0.81872 0.79853 0.86959 1.90656 1.60504 1.49506 1.43659 1.45918 1.07036 1.53912 1.29095 1.23012 0.93393 0.91634 0.90219 1.22575 0.87250 0.94824 0.92658 1.46056 1.34150 1.02173 1.54267 1.19452 1.06794 0.88531 1.21779 0.89216 1.25721 1.01160 0.97696 1.01561 1.70049 1.36538 1.08767 1.45098 0.85012 0.77841 0.77684 0.78388 1.20934 1.22263 1.18991 1.22996 0.91351 0.86089 0.99845 0.93627 0.93016 0.91360 0.91766 0.90277 0.90958 0.89330 0.94198 0.88294 0.89597 0.87669 0.75161 0.89803 0.95647 0.95242 0.94266 0.92122 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.81 71.98 0.71 -2.36 16 2 C -0.14 -3.56 5.21 30.59 0.16 -3.40 16 3 C 0.11 2.47 2.22 30.63 0.07 2.54 16 4 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 5 O -0.39 -10.35 9.00 -133.01 -1.20 -11.55 16 6 C 0.05 0.97 6.84 72.01 0.49 1.46 16 7 C -0.16 -2.71 5.88 30.69 0.18 -2.53 16 8 C -0.11 -1.48 5.46 30.71 0.17 -1.31 16 9 C -0.14 -2.77 2.60 -11.45 -0.03 -2.80 16 10 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 11 C 0.51 15.68 5.64 87.66 0.49 16.18 16 12 O -0.57 -22.95 12.54 12.93 0.16 -22.79 16 13 N -0.71 -20.91 5.25 -447.37 -2.35 -23.26 16 14 C 0.12 4.92 4.40 46.75 0.21 5.13 16 15 C 0.15 7.69 7.33 86.44 0.63 8.32 16 16 N -0.64 -33.48 3.70 -716.65 -2.65 -36.13 16 17 C -0.24 -13.56 10.70 84.04 0.90 -12.66 16 18 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 19 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 20 N -0.96 -59.84 11.39 21.65 0.25 -59.59 16 21 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C 0.12 4.78 8.69 86.49 0.75 5.53 16 26 H 0.04 1.13 7.82 -2.39 -0.02 1.11 16 27 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 2.25 5.46 -2.39 -0.01 2.24 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.04 0.96 7.39 -2.39 -0.02 0.94 16 34 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.09 1.00 7.51 -2.39 -0.02 0.98 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.41 9.15 8.12 -92.71 -0.75 8.40 16 38 H 0.08 3.80 7.51 -2.39 -0.02 3.78 16 39 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.03 1.72 7.17 -2.38 -0.02 1.71 16 41 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 42 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.07 2.21 8.11 -2.39 -0.02 2.19 16 Total: -1.00 -77.07 337.82 1.67 -75.40 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.24 Total: 18.83 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.20 Total: 10.56 kcal Atomic # 7 Polarization: -114.23 SS G_CDS: -4.76 Total: -118.99 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -1.03 Total: -34.33 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.07 1.67 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030418040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.462 kcal (2) G-P(sol) polarization free energy of solvation -77.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds