Wall clock time and date at job start Tue Mar 31 2020 05:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 H 1.09006 * 109.49048 * 54.96328 * 3 2 1 5 5 C 1.53085 * 109.48337 * 174.99748 * 3 2 1 6 6 C 1.53180 * 109.16652 * 177.58901 * 5 3 2 7 7 H 1.09005 * 109.53942 * 62.97124 * 6 5 3 8 8 C 1.50699 * 109.54708 * 183.14973 * 6 5 3 9 9 O 1.21283 * 119.99534 * 0.02562 * 8 6 5 10 10 N 1.34767 * 120.00123 * 179.97438 * 8 6 5 11 11 C 1.46502 * 120.00493 * 180.02562 * 10 8 6 12 12 C 1.53495 * 114.21169 * 205.00388 * 11 10 8 13 13 N 1.47057 * 87.98448 * 220.34174 * 12 11 10 14 14 C 1.36941 * 136.06078 * 207.07768 * 13 12 11 15 15 H 1.08003 * 119.99636 * 6.50318 * 14 13 12 16 16 C 1.38809 * 120.00308 * 186.50022 * 14 13 12 17 17 N 1.31618 * 120.00309 * 6.42234 * 16 14 13 18 18 Si 1.86804 * 119.99744 * 186.42092 * 16 14 13 19 19 H 1.48495 * 109.47284 * 84.99114 * 18 16 14 20 20 H 1.48497 * 109.47368 * 324.98663 * 18 16 14 21 21 H 1.48503 * 109.46695 * 204.99018 * 18 16 14 22 22 C 1.47069 * 87.88643 * 27.34248 * 13 12 11 23 23 C 1.53178 * 109.03651 * 303.02108 * 6 5 3 24 24 C 1.53097 * 109.16326 * 56.97699 * 23 6 5 25 25 O 1.42905 * 109.41208 * 302.39169 * 24 23 6 26 26 H 1.08998 * 109.46880 * 60.00710 * 1 2 3 27 27 H 1.09008 * 109.46882 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47599 * 300.00567 * 1 2 3 29 29 H 1.08998 * 109.47599 * 239.99433 * 2 1 3 30 30 H 1.09008 * 109.46916 * 119.99460 * 2 1 3 31 31 H 1.09001 * 109.52508 * 57.67957 * 5 3 2 32 32 H 1.09006 * 109.57635 * 297.52351 * 5 3 2 33 33 H 0.97008 * 120.00443 * 0.02562 * 10 8 6 34 34 H 1.09008 * 113.40706 * 338.20051 * 11 10 8 35 35 H 1.08997 * 113.47010 * 105.55811 * 12 11 10 36 36 H 1.08997 * 113.51510 * 335.13289 * 12 11 10 37 37 H 0.96994 * 119.99922 * 179.97438 * 17 16 14 38 38 H 1.08996 * 113.47099 * 87.43808 * 22 13 12 39 39 H 1.08997 * 113.46798 * 217.87691 * 22 13 12 40 40 H 1.08997 * 109.52416 * 176.88466 * 23 6 5 41 41 H 1.08998 * 109.51944 * 297.07593 * 23 6 5 42 42 H 1.08997 * 109.47706 * 182.41435 * 24 23 6 43 43 H 1.08999 * 109.48974 * 62.38035 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9821 0.8414 5 6 3.5657 1.4446 0.1258 6 6 4.0734 2.8886 0.0645 7 1 3.6803 3.4495 0.9125 8 6 5.5796 2.8958 0.1099 9 8 6.1891 1.8498 0.1836 10 7 6.2495 4.0644 0.0676 11 6 7.7138 4.0715 0.1111 12 6 8.3212 5.3730 0.6527 13 7 9.3536 5.2636 -0.3888 14 6 10.6503 5.6774 -0.5392 15 1 11.1685 6.1409 0.2872 16 6 11.2988 5.5010 -1.7538 17 7 10.6322 5.0535 -2.7968 18 14 13.1174 5.8988 -1.9080 19 1 13.9191 4.7274 -1.4718 20 1 13.4428 7.0678 -1.0521 21 1 13.4361 6.2174 -3.3230 22 6 8.3785 4.5201 -1.2007 23 6 3.5970 3.5306 -1.2421 24 6 2.0700 3.4479 -1.3151 25 8 1.6633 2.0811 -1.2217 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.9996 0.8709 -0.6931 32 1 3.8543 0.9972 1.0770 33 1 5.7621 4.9011 0.0083 34 1 8.1386 3.1659 0.5444 35 1 8.7144 5.2803 1.6651 36 1 7.6717 6.2398 0.5308 37 1 11.0853 4.9306 -3.6456 38 1 7.7435 5.1614 -1.8118 39 1 8.8205 3.7006 -1.7674 40 1 3.9069 4.5752 -1.2688 41 1 4.0314 2.9990 -2.0887 42 1 1.7283 3.8648 -2.2625 43 1 1.6353 4.0137 -0.4911 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031217194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:03 Heat of formation + Delta-G solvation = -43.457487 kcal Electronic energy + Delta-G solvation = -22465.855886 eV Core-core repulsion = 19126.304218 eV Total energy + Delta-G solvation = -3339.551668 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.36539 -38.99649 -37.63355 -34.34318 -33.79181 -33.37655 -31.81735 -29.98540 -27.70238 -26.09451 -24.65960 -23.98838 -23.16847 -21.92397 -20.87111 -19.91041 -19.50508 -17.03809 -16.77430 -16.62098 -16.12989 -15.60105 -15.09201 -14.86927 -14.73004 -14.13475 -13.91295 -13.81629 -13.66752 -13.54518 -13.02972 -12.64860 -12.09929 -11.99214 -11.91961 -11.54221 -11.49924 -11.42699 -11.32872 -11.11466 -10.97686 -10.81261 -10.79720 -10.51019 -10.44504 -10.12271 -9.87982 -9.48232 -9.30998 -8.82791 -8.40957 -6.96793 -5.83109 -3.15906 2.86103 3.36101 3.40110 3.43795 3.45173 3.59718 4.40017 4.43283 4.61206 4.62045 4.72298 4.89316 4.90499 5.11083 5.14529 5.17788 5.24730 5.31427 5.41642 5.45655 5.50662 5.53687 5.54618 5.68910 5.74550 5.83210 5.91431 5.97715 5.98147 6.09270 6.18643 6.21073 6.36924 6.51568 6.73715 7.06276 7.14639 7.31457 7.47634 7.84849 7.90976 8.52192 8.97681 9.64227 10.56185 11.35242 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042211 B = 0.002971 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.169592 B = 9421.094123 C = 9495.169359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.130 4.130 6 C -0.109 4.109 7 H 0.094 0.906 8 C 0.516 3.484 9 O -0.542 6.542 10 N -0.711 5.711 11 C 0.085 3.915 12 C 0.110 3.890 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.083 0.917 16 C -0.005 4.005 17 N -0.917 5.917 18 Si 0.916 3.084 19 H -0.286 1.286 20 H -0.280 1.280 21 H -0.290 1.290 22 C 0.152 3.848 23 C -0.149 4.149 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.396 0.604 34 H 0.115 0.885 35 H 0.045 0.955 36 H 0.033 0.967 37 H 0.255 0.745 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.097 0.903 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.065 -4.392 6.084 22.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.168 4.168 6 C -0.131 4.131 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.419 6.419 10 N -0.361 5.361 11 C -0.020 4.020 12 C -0.017 4.017 13 N -0.329 5.329 14 C -0.350 4.350 15 H 0.101 0.899 16 C -0.203 4.203 17 N -0.563 5.563 18 Si 0.746 3.254 19 H -0.213 1.213 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.025 3.975 23 C -0.187 4.187 24 C -0.012 4.012 25 O -0.297 6.297 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.230 0.770 34 H 0.133 0.867 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.364 -5.179 5.807 21.800 hybrid contribution 0.962 1.062 -0.077 1.435 sum -19.402 -4.117 5.730 20.646 Atomic orbital electron populations 1.21719 0.95345 1.01443 1.02144 1.21543 0.96491 0.94361 1.03028 1.22185 0.93443 0.94120 0.86948 0.92504 1.22042 0.95093 0.95209 1.04416 1.21385 0.93012 0.98934 0.99732 0.88756 1.20445 0.89335 0.84051 0.76020 1.90695 1.70015 1.31665 1.49489 1.46015 1.08003 1.08158 1.73971 1.23666 0.77057 0.99826 1.01483 1.22704 0.90773 0.93834 0.94404 1.45358 1.07483 1.63929 1.16173 1.18893 0.84343 1.34945 0.96820 0.89877 1.24872 0.98681 1.01539 0.95181 1.69855 1.34950 1.50772 1.00674 0.86089 0.84359 0.78070 0.76915 1.21284 1.20602 1.21576 1.22440 0.88560 0.94621 0.91841 1.22214 0.97237 1.01852 0.97366 1.22542 0.93152 0.83233 1.02241 1.87930 1.78482 1.24622 1.38655 0.91957 0.92849 0.93059 0.90924 0.90538 0.89995 0.90256 0.77029 0.86674 0.93669 0.94966 0.93459 0.95197 0.91840 0.90136 0.90108 0.88528 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.81 37.16 0.36 -0.76 16 2 C -0.12 -0.99 5.64 -26.73 -0.15 -1.14 16 3 C 0.09 0.86 2.64 -26.69 -0.07 0.78 16 4 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 5 C -0.13 -1.44 4.02 -26.59 -0.11 -1.55 16 6 C -0.11 -1.20 2.61 -91.59 -0.24 -1.44 16 7 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 8 C 0.52 7.90 7.16 -10.99 -0.08 7.82 16 9 O -0.54 -10.62 15.56 5.55 0.09 -10.53 16 10 N -0.71 -10.71 5.29 -53.49 -0.28 -10.99 16 11 C 0.08 1.65 4.62 -67.68 -0.31 1.34 16 12 C 0.11 2.22 8.44 -8.52 -0.07 2.14 16 13 N -0.60 -15.64 3.76 -184.65 -0.70 -16.34 16 14 C -0.22 -6.30 10.73 -15.06 -0.16 -6.46 16 15 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.63 11.81 55.49 0.66 -26.97 16 18 Si 0.92 22.22 29.56 -169.99 -5.02 17.20 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C 0.15 3.65 7.04 -8.38 -0.06 3.59 16 23 C -0.15 -1.45 5.30 -26.59 -0.14 -1.59 16 24 C 0.07 0.56 6.84 37.21 0.25 0.81 16 25 O -0.38 -4.00 9.94 -35.23 -0.35 -4.35 16 26 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.08 1.08 8.02 -51.93 -0.42 0.66 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.40 4.76 8.27 -40.82 -0.34 4.42 16 34 H 0.12 2.45 7.46 -51.92 -0.39 2.07 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.73 7.57 -51.93 -0.39 1.33 16 40 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -33.51 346.45 -8.64 -42.15 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.38 Total: 1.31 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -0.87 Total: 3.30 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.32 Total: -54.30 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.26 Total: -14.88 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.51 -8.64 -42.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031217194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.309 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds