Wall clock time and date at job start Tue Mar 31 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46570 * 2 1 4 4 H 1.09001 * 109.48160 * 305.01663 * 3 2 1 5 5 C 1.53095 * 109.47461 * 184.99877 * 3 2 1 6 6 C 1.53181 * 109.16073 * 182.40883 * 5 3 2 7 7 H 1.09005 * 109.54395 * 297.11236 * 6 5 3 8 8 C 1.50699 * 109.54695 * 176.93666 * 6 5 3 9 9 O 1.21284 * 119.99278 * 359.97438 * 8 6 5 10 10 N 1.34772 * 120.00687 * 179.97438 * 8 6 5 11 11 C 1.46493 * 120.00398 * 179.97438 * 10 8 6 12 12 C 1.53948 * 113.74107 * 253.74127 * 11 10 8 13 13 N 1.47819 * 86.03499 * 222.08304 * 12 11 10 14 14 C 1.36933 * 134.45421 * 204.64706 * 13 12 11 15 15 H 1.08004 * 119.99942 * 173.35294 * 14 13 12 16 16 C 1.38811 * 120.00122 * 353.34392 * 14 13 12 17 17 N 1.31609 * 120.00135 * 5.06974 * 16 14 13 18 18 Si 1.86808 * 119.99836 * 185.06548 * 16 14 13 19 19 H 1.48500 * 109.46939 * 94.98834 * 18 16 14 20 20 H 1.48498 * 109.47086 * 214.98891 * 18 16 14 21 21 H 1.48502 * 109.47155 * 334.99189 * 18 16 14 22 22 C 1.47578 * 91.05147 * 24.55231 * 13 12 11 23 23 C 1.53179 * 109.03728 * 56.97962 * 6 5 3 24 24 C 1.53090 * 109.16273 * 303.02042 * 23 6 5 25 25 O 1.42901 * 109.48064 * 65.05641 * 3 2 1 26 26 H 1.09005 * 109.47413 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47627 * 299.99901 * 1 2 3 28 28 H 1.09006 * 109.47278 * 60.00644 * 1 2 3 29 29 H 1.08996 * 109.46829 * 119.99657 * 2 1 3 30 30 H 1.09000 * 109.46926 * 240.00262 * 2 1 3 31 31 H 1.08998 * 109.52475 * 302.30774 * 5 3 2 32 32 H 1.08997 * 109.52251 * 62.50795 * 5 3 2 33 33 H 0.97006 * 119.99434 * 359.97438 * 10 8 6 34 34 H 1.08997 * 112.94421 * 25.33587 * 11 10 8 35 35 H 1.08994 * 113.76743 * 336.34812 * 12 11 10 36 36 H 1.08998 * 113.77033 * 107.74999 * 12 11 10 37 37 H 0.97001 * 120.00329 * 180.02562 * 17 16 14 38 38 H 1.09004 * 113.76899 * 221.15177 * 22 13 12 39 39 H 1.08997 * 113.77292 * 89.75106 * 22 13 12 40 40 H 1.08997 * 109.51919 * 62.92694 * 23 6 5 41 41 H 1.09003 * 109.52366 * 183.05488 * 23 6 5 42 42 H 1.09006 * 109.48206 * 177.59223 * 24 23 6 43 43 H 1.09006 * 109.48074 * 297.61483 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6051 1.9818 -0.8416 5 6 3.5657 1.4446 -0.1258 6 6 4.0732 2.8886 -0.0645 7 1 3.6790 3.4499 -0.9116 8 6 5.5795 2.8960 -0.1119 9 8 6.1889 1.8501 -0.1869 10 7 6.2493 4.0648 -0.0711 11 6 7.7135 4.0719 -0.1166 12 6 8.3741 4.3974 1.2353 13 7 9.3070 5.2419 0.4597 14 6 10.5835 5.6948 0.6606 15 1 11.0977 6.2273 -0.1259 16 6 11.2168 5.4698 1.8752 17 7 10.6303 4.7362 2.7971 18 14 12.9015 6.2082 2.2012 19 1 12.7460 7.4960 2.9241 20 1 13.7017 5.2697 3.0282 21 1 13.5959 6.4461 0.9102 22 6 8.3116 5.3988 -0.6185 23 6 3.5967 3.5307 1.2420 24 6 2.0698 3.4480 1.3150 25 8 1.6630 2.0812 1.2215 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.9995 0.8711 0.6933 32 1 3.8533 0.9975 -1.0773 33 1 5.7618 4.9013 -0.0115 34 1 8.1277 3.1907 -0.6066 35 1 7.7326 4.9600 1.9135 36 1 8.8485 3.5389 1.7105 37 1 11.0726 4.5792 3.6461 38 1 8.7361 5.3381 -1.6206 39 1 7.6517 6.2561 -0.4859 40 1 4.0312 2.9992 2.0887 41 1 3.9075 4.5751 1.2692 42 1 1.7279 3.8650 2.2623 43 1 1.6353 4.0138 0.4908 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031217198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:10 Heat of formation + Delta-G solvation = -46.741235 kcal Electronic energy + Delta-G solvation = -22494.399149 eV Core-core repulsion = 19154.705087 eV Total energy + Delta-G solvation = -3339.694062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34556 -38.93666 -37.47734 -34.33353 -33.77839 -33.34728 -31.75589 -29.97772 -27.64699 -26.06777 -24.85588 -23.96519 -23.09829 -21.90087 -20.86129 -19.85079 -19.44869 -17.00705 -16.80023 -16.61235 -16.12970 -15.56340 -15.09141 -14.87794 -14.71858 -14.12101 -13.90707 -13.77768 -13.64920 -13.53506 -13.01499 -12.63538 -12.06931 -11.98198 -11.85211 -11.53059 -11.49396 -11.43458 -11.31983 -11.10645 -10.90621 -10.81066 -10.78793 -10.51002 -10.45461 -10.05676 -9.86739 -9.56496 -9.28614 -8.82777 -8.45039 -6.93601 -5.81150 -3.14411 2.88283 3.37014 3.40402 3.45134 3.46917 3.60586 4.40799 4.44040 4.62633 4.63071 4.73047 4.90024 4.91164 5.09180 5.11723 5.17178 5.24245 5.31458 5.43920 5.46364 5.51445 5.54794 5.57580 5.69812 5.75092 5.84054 5.92086 5.98698 5.99856 6.09872 6.18353 6.21365 6.39381 6.53830 6.75352 7.06900 7.21201 7.33271 7.53352 7.86682 7.93397 8.54209 8.99901 9.66274 10.53591 11.36121 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041757 B = 0.002998 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.387689 B = 9336.493692 C = 9405.742857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.091 3.909 4 H 0.057 0.943 5 C -0.129 4.129 6 C -0.109 4.109 7 H 0.094 0.906 8 C 0.515 3.485 9 O -0.541 6.541 10 N -0.715 5.715 11 C 0.090 3.910 12 C 0.158 3.842 13 N -0.607 5.607 14 C -0.227 4.227 15 H 0.082 0.918 16 C -0.005 4.005 17 N -0.916 5.916 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.112 3.888 23 C -0.149 4.149 24 C 0.065 3.935 25 O -0.378 6.378 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.395 0.605 34 H 0.109 0.891 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.255 0.745 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.064 -3.767 -6.203 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.167 4.167 6 C -0.131 4.131 7 H 0.112 0.888 8 C 0.301 3.699 9 O -0.418 6.418 10 N -0.365 5.365 11 C -0.015 4.015 12 C 0.031 3.969 13 N -0.334 5.334 14 C -0.355 4.355 15 H 0.100 0.900 16 C -0.202 4.202 17 N -0.562 5.562 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.015 4.015 23 C -0.187 4.187 24 C -0.012 4.012 25 O -0.297 6.297 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.229 0.771 34 H 0.127 0.873 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.115 0.885 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.383 -4.581 -5.935 21.718 hybrid contribution 0.923 1.223 0.153 1.539 sum -19.461 -3.358 -5.781 20.577 Atomic orbital electron populations 1.21721 0.95352 1.01440 1.02137 1.21543 0.96484 0.94367 1.03032 1.22187 0.93463 0.94112 0.86941 0.92517 1.22042 0.95075 0.95231 1.04401 1.21385 0.93092 0.98902 0.99699 0.88811 1.20449 0.89310 0.84107 0.76074 1.90697 1.70009 1.31670 1.49461 1.46153 1.08227 1.08101 1.74016 1.23911 0.76812 0.99566 1.01184 1.22639 0.88587 0.94367 0.91270 1.45713 1.10009 1.58412 1.19256 1.18985 0.87310 1.31019 0.98165 0.90015 1.24860 0.99017 1.00329 0.96040 1.69845 1.38532 1.41068 1.06790 0.86095 0.83226 0.78506 0.77914 1.21561 1.21609 1.20465 1.22867 0.90951 0.93677 0.93966 1.22209 0.97211 1.01843 0.97393 1.22540 0.93162 0.83234 1.02223 1.87929 1.78471 1.24619 1.38664 0.92851 0.91958 0.93066 0.90919 0.90537 0.89985 0.90269 0.77106 0.87284 0.95234 0.90984 0.93497 0.93325 0.94781 0.90115 0.90161 0.88539 0.93146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.81 37.16 0.36 -0.77 16 2 C -0.12 -1.00 5.64 -26.73 -0.15 -1.15 16 3 C 0.09 0.86 2.64 -26.68 -0.07 0.79 16 4 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 5 C -0.13 -1.46 4.02 -26.59 -0.11 -1.56 16 6 C -0.11 -1.21 2.61 -91.59 -0.24 -1.45 16 7 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 8 C 0.52 7.95 7.16 -10.99 -0.08 7.87 16 9 O -0.54 -10.70 15.59 5.55 0.09 -10.62 16 10 N -0.71 -10.82 5.28 -55.34 -0.29 -11.11 16 11 C 0.09 1.76 4.40 -70.14 -0.31 1.45 16 12 C 0.16 3.80 7.24 -2.83 -0.02 3.78 16 13 N -0.61 -15.67 3.70 -177.87 -0.66 -16.32 16 14 C -0.23 -6.42 10.70 -15.06 -0.16 -6.58 16 15 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.56 11.51 55.49 0.64 -26.93 16 18 Si 0.91 22.21 29.56 -169.99 -5.02 17.18 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.11 2.24 8.69 -2.96 -0.03 2.21 16 23 C -0.15 -1.47 5.30 -26.59 -0.14 -1.61 16 24 C 0.07 0.56 6.84 37.20 0.25 0.82 16 25 O -0.38 -4.03 9.94 -35.23 -0.35 -4.38 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.52 7.82 -51.93 -0.41 0.12 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.09 8.03 -51.93 -0.42 0.68 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.40 4.78 8.23 -40.82 -0.34 4.44 16 34 H 0.11 2.33 7.51 -51.93 -0.39 1.94 16 35 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.98 7.37 -51.93 -0.38 1.59 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 42 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 346.06 15.07 5.22 5.22 Total: -1.00 -33.43 346.06 -8.54 -41.97 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.37 Total: 1.43 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -0.78 Total: 3.56 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.31 Total: -54.36 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.26 Total: -15.00 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.43 -8.54 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031217198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.773 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds