Wall clock time and date at job start Tue Mar 31 2020 05:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46814 * 2 1 4 4 H 1.08998 * 109.82776 * 305.88357 * 3 2 1 5 5 C 1.54389 * 109.82773 * 185.00188 * 3 2 1 6 6 C 1.55301 * 102.25177 * 219.12763 * 5 3 2 7 7 C 1.54947 * 100.94165 * 34.13622 * 6 5 3 8 8 H 1.08998 * 110.31419 * 82.56361 * 7 6 5 9 9 C 1.50701 * 110.31004 * 204.64205 * 7 6 5 10 10 O 1.21277 * 120.00435 * 113.61045 * 9 7 6 11 11 N 1.34778 * 119.99810 * 293.60249 * 9 7 6 12 12 C 1.46504 * 120.00411 * 179.97438 * 11 9 7 13 13 C 1.52993 * 109.47451 * 180.02562 * 12 11 9 14 14 C 1.53949 * 113.74115 * 88.32799 * 13 12 11 15 15 N 1.47573 * 86.11727 * 90.73812 * 14 13 12 16 16 C 1.36934 * 134.49418 * 204.63828 * 15 14 13 17 17 H 1.08001 * 120.00214 * 179.97438 * 16 15 14 18 18 C 1.38816 * 119.99966 * 0.02562 * 16 15 14 19 19 N 1.31613 * 119.99659 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 120.00016 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47026 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47081 * 120.00109 * 20 18 16 23 23 H 1.48507 * 109.46823 * 240.00028 * 20 18 16 24 24 C 1.47583 * 91.01675 * 24.64206 * 15 14 13 25 25 O 1.43370 * 109.75117 * 66.89105 * 3 2 1 26 26 H 1.08999 * 109.47387 * 299.99745 * 1 2 3 27 27 H 1.09000 * 109.47168 * 59.99788 * 1 2 3 28 28 H 1.08999 * 109.47120 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46958 * 240.00573 * 2 1 3 30 30 H 1.08995 * 109.47627 * 120.00139 * 2 1 3 31 31 H 1.09002 * 110.84345 * 100.93847 * 5 3 2 32 32 H 1.08999 * 111.02093 * 337.39981 * 5 3 2 33 33 H 1.08995 * 111.12829 * 276.21887 * 6 5 3 34 34 H 1.08998 * 111.16154 * 152.06824 * 6 5 3 35 35 H 0.97003 * 119.99988 * 0.02562 * 11 9 7 36 36 H 1.09004 * 109.46773 * 59.99953 * 12 11 9 37 37 H 1.08996 * 109.46751 * 300.00959 * 12 11 9 38 38 H 1.09004 * 113.01811 * 316.66545 * 13 12 11 39 39 H 1.09003 * 113.76687 * 205.04166 * 14 13 12 40 40 H 1.09004 * 113.76847 * 336.43305 * 14 13 12 41 41 H 0.97004 * 119.99761 * 179.97438 * 19 18 16 42 42 H 1.08996 * 113.77114 * 221.06092 * 24 15 14 43 43 H 1.09000 * 113.77347 * 89.66012 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5965 1.9914 -0.8308 5 6 3.5785 1.4541 -0.1266 6 6 3.9798 2.6055 0.8352 7 6 2.8994 2.4589 1.9362 8 1 3.1872 1.6855 2.6482 9 6 2.6945 3.7723 2.6462 10 8 1.6393 4.3607 2.5405 11 7 3.6839 4.2930 3.3987 12 6 3.4851 5.5701 4.0885 13 6 4.7519 5.9325 4.8661 14 6 5.7783 6.7303 4.0415 15 7 5.0957 7.9374 4.5461 16 6 4.9660 9.2248 4.0978 17 1 4.3950 9.9410 4.6700 18 6 5.5677 9.6090 2.9073 19 7 6.2631 8.7361 2.2097 20 14 5.3902 11.3650 2.2953 21 1 4.5652 12.1425 3.2545 22 1 6.7336 11.9870 2.1795 23 1 4.7301 11.3613 0.9650 24 6 4.6088 7.2000 5.7281 25 8 1.7021 2.0759 1.2411 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8819 1.6793 -1.1491 32 1 4.0051 0.5068 0.2030 33 1 3.9074 3.5740 0.3404 34 1 4.9788 2.4484 1.2418 35 1 4.5280 3.8226 3.4831 36 1 2.6466 5.4831 4.7796 37 1 3.2730 6.3493 3.3564 38 1 5.1815 5.0848 5.4000 39 1 6.8038 6.6250 4.3958 40 1 5.6823 6.5889 2.9649 41 1 6.6832 9.0045 1.3776 42 1 3.5790 7.4335 5.9982 43 1 5.2906 7.2326 6.5779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031708251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:33 Heat of formation + Delta-G solvation = -38.388747 kcal Electronic energy + Delta-G solvation = -22484.667686 eV Core-core repulsion = 19145.335816 eV Total energy + Delta-G solvation = -3339.331871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.32644 -38.79754 -37.80235 -34.22834 -33.72301 -32.37929 -32.03268 -29.43507 -28.11242 -25.91558 -24.80647 -24.14190 -22.31207 -22.01977 -21.16150 -20.09996 -18.73499 -17.52059 -16.84305 -16.62151 -15.84811 -15.64232 -14.99843 -14.64630 -14.51994 -14.26020 -13.95488 -13.68593 -13.35185 -13.16291 -13.03726 -12.62074 -12.47806 -12.04224 -12.00596 -11.66150 -11.45505 -11.16505 -11.11680 -11.05953 -11.00104 -10.88157 -10.70904 -10.47718 -9.98260 -9.86332 -9.73622 -9.45522 -9.24279 -8.78610 -8.66905 -6.86202 -5.75272 -3.06861 2.82978 3.06554 3.40838 3.46493 3.48655 3.90406 4.25419 4.44751 4.48005 4.66693 4.84776 4.90293 4.94485 5.11828 5.18960 5.22630 5.25063 5.35065 5.38655 5.51480 5.56791 5.61527 5.63213 5.69230 5.74781 5.86592 5.99195 6.04890 6.14300 6.16499 6.34295 6.52477 6.63732 6.67566 6.77406 6.89038 7.19445 7.31830 7.57886 7.78397 8.00327 8.49362 9.06934 9.73130 10.61534 11.41913 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.003500 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.715891 B = 7999.050885 C = 8457.380925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.065 3.935 8 H 0.093 0.907 9 C 0.509 3.491 10 O -0.524 6.524 11 N -0.720 5.720 12 C 0.150 3.850 13 C -0.155 4.155 14 C 0.166 3.834 15 N -0.611 5.611 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.910 3.090 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.126 3.874 25 O -0.346 6.346 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.397 0.603 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.252 0.748 42 H 0.046 0.954 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.492 -19.600 -2.367 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.004 3.996 8 H 0.110 0.890 9 C 0.293 3.707 10 O -0.399 6.399 11 N -0.372 5.372 12 C 0.027 3.973 13 C -0.175 4.175 14 C 0.040 3.960 15 N -0.338 5.338 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.000 4.000 25 O -0.264 6.264 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.085 0.915 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.459 -18.846 -2.591 19.539 hybrid contribution 0.817 0.762 -0.322 1.163 sum -3.641 -18.084 -2.912 18.675 Atomic orbital electron populations 1.21717 0.95241 1.01246 1.02592 1.21898 0.97109 0.95627 1.02247 1.22903 0.94334 0.93530 0.87477 0.90019 1.23178 0.95191 0.99175 1.01125 1.23255 0.98898 1.00476 0.95782 1.22803 0.86551 0.94800 0.95454 0.88966 1.20343 0.84319 0.86595 0.79444 1.90722 1.26335 1.61486 1.61380 1.45944 1.16801 1.24284 1.50191 1.21078 0.96424 0.84029 0.95777 1.23448 0.97374 0.97262 0.99387 1.22318 0.91928 0.83026 0.98693 1.46010 1.59334 1.07779 1.20645 1.19080 1.27081 0.85255 1.03446 0.90243 1.24757 1.00019 0.98058 0.97631 1.69814 1.38093 1.33004 1.15981 0.86069 0.77186 0.84060 0.78609 1.20459 1.21826 1.21708 1.22532 0.97635 0.88644 0.91215 1.88590 1.27333 1.77934 1.32556 0.91798 0.92839 0.93030 0.91089 0.91507 0.89639 0.90114 0.89379 0.88864 0.76903 0.92241 0.89973 0.91530 0.95655 0.90693 0.93825 0.93618 0.94531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.83 37.16 0.37 -0.98 16 2 C -0.13 -1.09 5.50 -26.73 -0.15 -1.24 16 3 C 0.08 0.78 3.52 -26.00 -0.09 0.68 16 4 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -1.22 6.54 -24.78 -0.16 -1.38 16 6 C -0.15 -1.47 6.56 -24.48 -0.16 -1.63 16 7 C 0.07 0.80 3.86 -26.85 -0.10 0.70 16 8 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.51 8.31 7.18 -10.98 -0.08 8.23 16 10 O -0.52 -11.20 16.55 -13.78 -0.23 -11.43 16 11 N -0.72 -10.66 5.55 -60.30 -0.33 -11.00 16 12 C 0.15 2.68 5.43 -4.04 -0.02 2.66 16 13 C -0.15 -2.73 4.00 -89.70 -0.36 -3.09 16 14 C 0.17 3.74 7.01 -2.98 -0.02 3.72 16 15 N -0.61 -15.51 3.59 -177.92 -0.64 -16.15 16 16 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.24 11.38 55.49 0.63 -26.61 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C 0.13 2.52 8.51 -2.97 -0.03 2.50 16 25 O -0.35 -4.87 9.91 -54.57 -0.54 -5.41 16 26 H 0.06 0.69 7.89 -51.93 -0.41 0.28 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 33 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.40 4.58 8.47 -40.82 -0.35 4.23 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.84 7.97 -51.93 -0.41 1.43 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.88 7.11 -51.93 -0.37 1.51 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -34.53 351.27 -9.31 -43.84 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.40 Total: 0.56 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.06 Total: 3.43 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.34 Total: -53.76 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.77 Total: -16.84 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.53 -9.31 -43.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031708251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.451 kcal (2) G-P(sol) polarization free energy of solvation -34.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds