Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47022 * 2 1 4 4 H 1.08996 * 109.82109 * 54.42978 * 3 2 1 5 5 C 1.54385 * 109.82640 * 175.41332 * 3 2 1 6 6 C 1.55307 * 102.25125 * 140.87029 * 5 3 2 7 7 C 1.54955 * 100.93975 * 325.86399 * 6 5 3 8 8 H 1.08997 * 110.39180 * 277.48345 * 7 6 5 9 9 C 1.50695 * 110.30705 * 155.36284 * 7 6 5 10 10 O 1.21287 * 119.99873 * 247.83301 * 9 7 6 11 11 N 1.34778 * 120.00243 * 67.83141 * 9 7 6 12 12 C 1.46502 * 119.99884 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.46767 * 180.02562 * 12 11 9 14 14 C 1.53493 * 114.20426 * 175.00255 * 13 12 11 15 15 N 1.47060 * 87.98914 * 87.71209 * 14 13 12 16 16 C 1.36935 * 136.05988 * 207.08611 * 15 14 13 17 17 H 1.08005 * 119.99877 * 359.97438 * 16 15 14 18 18 C 1.38811 * 120.00369 * 179.72694 * 16 15 14 19 19 N 1.31617 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47045 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47426 * 119.99572 * 20 18 16 23 23 H 1.48501 * 109.46833 * 239.99815 * 20 18 16 24 24 C 1.47066 * 87.88562 * 27.34336 * 15 14 13 25 25 O 1.43239 * 109.82738 * 293.54238 * 3 2 1 26 26 H 1.09001 * 109.47008 * 59.99978 * 1 2 3 27 27 H 1.09004 * 109.47369 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47143 * 300.00190 * 1 2 3 29 29 H 1.08999 * 109.47143 * 239.99810 * 2 1 3 30 30 H 1.08999 * 109.46970 * 119.99480 * 2 1 3 31 31 H 1.09003 * 110.84074 * 259.05482 * 5 3 2 32 32 H 1.09000 * 110.85131 * 22.47484 * 5 3 2 33 33 H 1.09002 * 111.12258 * 207.94744 * 6 5 3 34 34 H 1.08996 * 111.12684 * 83.77677 * 6 5 3 35 35 H 0.97001 * 120.00147 * 0.02562 * 11 9 7 36 36 H 1.08994 * 109.47715 * 60.00288 * 12 11 9 37 37 H 1.09004 * 109.47226 * 299.99479 * 12 11 9 38 38 H 1.08998 * 113.28279 * 41.92908 * 13 12 11 39 39 H 1.08999 * 113.46842 * 332.93132 * 14 13 12 40 40 H 1.09008 * 113.51989 * 202.50625 * 14 13 12 41 41 H 0.97004 * 120.00382 * 180.02562 * 19 18 16 42 42 H 1.08995 * 113.47095 * 87.43770 * 24 15 14 43 43 H 1.09002 * 113.46562 * 217.88366 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9898 0.8341 5 6 3.5795 1.4537 0.1161 6 6 3.9742 2.6074 -0.8457 7 6 2.8862 2.4634 -1.9397 8 1 3.1675 1.6914 -2.6558 9 6 2.6767 3.7785 -2.6451 10 8 1.6319 4.3795 -2.5098 11 7 3.6502 4.2868 -3.4264 12 6 3.4462 5.5650 -4.1126 13 6 4.6941 5.9111 -4.9275 14 6 4.5528 7.1735 -5.7891 15 7 5.0035 7.9542 -4.6272 16 6 4.8265 9.2327 -4.1696 17 1 4.2186 9.9275 -4.7300 18 6 5.4242 9.6341 -2.9828 19 7 6.1607 8.7857 -2.2971 20 14 5.1823 11.3778 -2.3581 21 1 4.3178 12.1273 -3.3048 22 1 4.5365 11.3398 -1.0215 23 1 6.5007 12.0529 -2.2519 24 6 5.7332 6.7597 -4.1763 25 8 1.6945 2.0800 -1.2353 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.8897 1.6765 1.1370 32 1 4.0006 0.5052 -0.2173 33 1 4.9704 2.4505 -1.2594 34 1 3.9052 3.5747 -0.3481 35 1 4.4856 3.8060 -3.5350 36 1 3.2640 6.3477 -3.3764 37 1 2.5875 5.4864 -4.7795 38 1 5.1157 5.0552 -5.4544 39 1 3.5248 7.3861 -6.0826 40 1 5.2462 7.2064 -6.6296 41 1 6.5781 9.0660 -1.4675 42 1 6.7382 6.6826 -4.5910 43 1 5.7107 6.6195 -3.0955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031708252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = -34.766660 kcal Electronic energy + Delta-G solvation = -22480.648454 eV Core-core repulsion = 19141.473649 eV Total energy + Delta-G solvation = -3339.174805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32958 -38.84999 -37.91102 -34.23727 -33.71999 -32.38168 -32.06290 -29.44707 -28.14400 -25.98309 -24.60944 -24.15168 -22.39447 -22.02442 -21.16360 -20.10191 -18.78883 -17.52708 -16.86372 -16.57516 -15.83741 -15.63834 -14.98762 -14.65240 -14.52391 -14.25734 -13.95105 -13.70780 -13.34880 -13.17099 -13.02910 -12.62373 -12.47998 -12.03718 -12.00371 -11.65724 -11.53370 -11.16184 -11.10944 -11.06428 -10.98623 -10.88159 -10.73667 -10.50985 -9.97726 -9.86621 -9.79828 -9.31815 -9.19956 -8.81138 -8.65300 -6.87653 -5.76384 -3.08355 2.83160 3.07447 3.40484 3.45991 3.48292 3.90980 4.25764 4.44813 4.47259 4.67314 4.84783 4.90657 4.94638 5.12381 5.19700 5.24363 5.27795 5.31617 5.38513 5.51332 5.56903 5.61155 5.63228 5.69405 5.74890 5.86770 6.01900 6.05035 6.14469 6.16778 6.36721 6.52624 6.59505 6.68501 6.78076 6.90005 7.17448 7.29008 7.55644 7.79246 7.98563 8.50227 9.04686 9.71412 10.64228 11.41141 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023075 B = 0.003509 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.162050 B = 7977.507360 C = 8435.726113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.075 3.925 4 H 0.082 0.918 5 C -0.149 4.149 6 C -0.146 4.146 7 C 0.065 3.935 8 H 0.093 0.907 9 C 0.509 3.491 10 O -0.524 6.524 11 N -0.720 5.720 12 C 0.152 3.848 13 C -0.161 4.161 14 C 0.126 3.874 15 N -0.609 5.609 16 C -0.216 4.216 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.158 3.842 25 O -0.346 6.346 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.397 0.603 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.205 -19.658 2.466 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.100 0.900 5 C -0.187 4.187 6 C -0.184 4.184 7 C 0.004 3.996 8 H 0.110 0.890 9 C 0.293 3.707 10 O -0.399 6.399 11 N -0.372 5.372 12 C 0.030 3.970 13 C -0.181 4.181 14 C 0.000 4.000 15 N -0.336 5.336 16 C -0.343 4.343 17 H 0.099 0.901 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.033 3.967 25 O -0.264 6.264 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.231 0.769 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.042 0.958 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.176 -18.867 2.726 19.515 hybrid contribution 0.790 0.721 0.296 1.110 sum -3.386 -18.146 3.022 18.705 Atomic orbital electron populations 1.21717 0.95238 1.01238 1.02600 1.21903 0.97116 0.95636 1.02240 1.22883 0.94277 0.93475 0.87603 0.90038 1.23181 0.95219 0.99148 1.01129 1.23250 0.98837 1.00437 0.95842 1.22805 0.86604 0.94783 0.95393 0.88988 1.20338 0.84193 0.86693 0.79499 1.90726 1.26641 1.60867 1.61665 1.45939 1.18208 1.24141 1.48918 1.21011 0.96311 0.84023 0.95693 1.23309 0.97829 0.97175 0.99773 1.22350 0.97801 0.88452 0.91439 1.45640 1.56403 1.09562 1.21959 1.18987 1.25754 0.85895 1.03709 0.90085 1.24773 0.99829 0.98251 0.97602 1.69824 1.36629 1.33783 1.16486 0.86047 0.77249 0.83839 0.78666 1.20418 1.21664 1.21797 1.22200 0.91610 0.83452 0.99484 1.88555 1.27472 1.77707 1.32694 0.91795 0.93033 0.92838 0.91519 0.91089 0.89648 0.90113 0.88876 0.89376 0.76928 0.89876 0.92225 0.91096 0.93992 0.94633 0.93800 0.95771 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.82 37.16 0.37 -0.98 16 2 C -0.13 -1.10 5.50 -26.73 -0.15 -1.25 16 3 C 0.08 0.78 3.52 -26.00 -0.09 0.69 16 4 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 5 C -0.15 -1.23 6.55 -24.78 -0.16 -1.39 16 6 C -0.15 -1.47 6.56 -24.48 -0.16 -1.63 16 7 C 0.07 0.81 3.86 -26.85 -0.10 0.70 16 8 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 9 C 0.51 8.35 7.17 -10.99 -0.08 8.27 16 10 O -0.52 -11.26 16.55 -13.77 -0.23 -11.49 16 11 N -0.72 -10.71 5.56 -60.29 -0.33 -11.05 16 12 C 0.15 2.75 5.51 -4.04 -0.02 2.73 16 13 C -0.16 -2.84 4.17 -89.97 -0.37 -3.21 16 14 C 0.13 2.54 8.25 -8.52 -0.07 2.47 16 15 N -0.61 -15.52 3.62 -184.61 -0.67 -16.19 16 16 C -0.22 -6.11 10.75 -15.06 -0.16 -6.27 16 17 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.25 11.49 55.49 0.64 -26.61 16 20 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.16 3.58 6.94 -8.37 -0.06 3.52 16 25 O -0.35 -4.89 9.88 -54.56 -0.54 -5.43 16 26 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 35 H 0.40 4.57 8.47 -40.82 -0.35 4.23 16 36 H 0.08 1.89 7.93 -51.93 -0.41 1.47 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 40 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.86 7.08 -51.93 -0.37 1.49 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -34.56 351.31 -9.43 -43.99 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.40 Total: 0.71 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.16 Total: 3.32 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.37 Total: -53.85 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.77 Total: -16.92 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.56 -9.43 -43.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031708252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.223 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds