Wall clock time and date at job start Tue Mar 31 2020 05:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47411 * 2 1 4 4 H 1.09001 * 110.33099 * 52.75300 * 3 2 1 5 5 C 1.54483 * 110.36894 * 174.99701 * 3 2 1 6 6 C 1.54509 * 104.05875 * 142.81146 * 5 3 2 7 7 C 1.54484 * 104.06634 * 0.02562 * 6 5 3 8 8 H 1.08995 * 110.37389 * 94.95929 * 7 6 5 9 9 C 1.50700 * 110.37277 * 217.19106 * 7 6 5 10 10 O 1.21283 * 119.99803 * 114.99440 * 9 7 6 11 11 N 1.34777 * 119.99675 * 295.27316 * 9 7 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.53952 * 113.74292 * 273.74097 * 13 12 11 15 15 N 1.47813 * 86.03902 * 222.08314 * 14 13 12 16 16 C 1.36932 * 134.46046 * 204.64679 * 15 14 13 17 17 H 1.08003 * 120.00358 * 179.86918 * 16 15 14 18 18 C 1.38816 * 119.99533 * 359.86499 * 16 15 14 19 19 N 1.31617 * 120.00165 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99631 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47105 * 120.00056 * 20 18 16 23 23 H 1.48497 * 109.46727 * 239.99612 * 20 18 16 24 24 C 1.47589 * 91.04931 * 24.54686 * 15 14 13 25 25 O 1.44420 * 110.37560 * 290.38107 * 3 2 1 26 26 H 1.09005 * 109.46746 * 59.99278 * 1 2 3 27 27 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47012 * 300.00280 * 1 2 3 29 29 H 1.09000 * 109.47012 * 239.99720 * 2 1 3 30 30 H 1.09004 * 109.47282 * 120.00183 * 2 1 3 31 31 H 1.08997 * 110.51179 * 24.17005 * 5 3 2 32 32 H 1.09004 * 110.62941 * 261.51032 * 5 3 2 33 33 H 1.08997 * 110.51473 * 241.35571 * 6 5 3 34 34 H 1.09011 * 110.51247 * 118.64232 * 6 5 3 35 35 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 36 36 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 37 37 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 38 38 H 1.08998 * 112.94600 * 45.33253 * 13 12 11 39 39 H 1.08998 * 113.77009 * 336.34864 * 14 13 12 40 40 H 1.09000 * 113.76911 * 107.74268 * 14 13 12 41 41 H 0.96998 * 119.99551 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.77057 * 221.14924 * 24 15 14 43 43 H 1.09003 * 113.86816 * 89.77015 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5831 2.0057 0.8136 5 6 3.5795 1.4684 0.1263 6 6 4.0108 2.6417 -0.7818 7 6 2.6810 3.1863 -1.3487 8 1 2.3237 4.0198 -0.7441 9 6 2.8590 3.6173 -2.7818 10 8 2.2698 3.0351 -3.6677 11 7 3.6773 4.6460 -3.0793 12 6 3.8549 5.0611 -4.4730 13 6 4.8266 6.2414 -4.5336 14 6 4.1512 7.6110 -4.3379 15 7 5.0224 8.0826 -5.4348 16 6 5.5197 9.3028 -5.8076 17 1 6.1566 9.3840 -6.6760 18 6 5.2049 10.4354 -5.0693 19 7 4.4282 10.3366 -4.0113 20 14 5.8827 12.1002 -5.5782 21 1 6.7225 11.9424 -6.7927 22 1 4.7576 13.0243 -5.8704 23 1 6.7070 12.6569 -4.4757 24 6 5.1432 6.7107 -5.9652 25 8 1.7632 2.0737 -1.2691 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.0078 0.5318 -0.2306 32 1 3.8771 1.6547 1.1582 33 1 4.6524 2.2853 -1.5875 34 1 4.5195 3.4093 -0.1983 35 1 4.1484 5.1116 -2.3707 36 1 4.2567 4.2293 -5.0515 37 1 2.8929 5.3613 -4.8882 38 1 5.7112 6.0959 -3.9138 39 1 3.0899 7.6170 -4.5863 40 1 4.3664 8.0733 -3.3745 41 1 4.2087 11.1280 -3.4953 42 1 6.1491 6.4556 -6.2988 43 1 4.3749 6.4499 -6.6931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031708253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:40 Heat of formation + Delta-G solvation = -39.489213 kcal Electronic energy + Delta-G solvation = -22087.794678 eV Core-core repulsion = 18748.415087 eV Total energy + Delta-G solvation = -3339.379590 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40268 -38.83177 -37.81608 -34.42027 -33.86402 -32.45053 -32.06907 -29.60759 -28.23337 -25.91629 -24.81345 -24.26147 -22.20782 -21.85702 -21.26040 -20.37538 -19.02934 -17.23460 -16.86759 -16.67247 -16.44026 -15.53660 -15.12527 -14.87613 -14.58260 -14.00366 -13.92032 -13.79335 -13.58251 -13.34395 -13.31456 -12.81817 -12.39154 -12.05911 -11.99149 -11.71939 -11.41665 -11.34232 -11.22868 -11.04656 -11.01045 -10.90071 -10.73802 -10.57252 -10.13140 -9.95308 -9.76672 -9.55147 -9.39904 -8.83775 -8.81147 -6.89351 -5.78655 -3.10620 2.68765 2.95711 3.37613 3.43116 3.45581 3.84923 4.22559 4.38251 4.43892 4.60093 4.68134 4.82873 4.91556 5.02686 5.03942 5.16905 5.25656 5.30681 5.35549 5.37822 5.46723 5.54448 5.64431 5.66776 5.69701 5.74713 5.82302 5.88943 6.03262 6.08378 6.23595 6.35014 6.52019 6.58654 6.64293 6.74998 7.20230 7.33820 7.53351 7.63925 7.96423 8.33702 9.03260 9.69332 10.58338 11.38654 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038435 B = 0.002769 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.320503 B =10108.973403 C =10312.313281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.069 3.931 4 H 0.071 0.929 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.057 3.943 8 H 0.095 0.905 9 C 0.515 3.485 10 O -0.526 6.526 11 N -0.719 5.719 12 C 0.131 3.869 13 C -0.153 4.153 14 C 0.168 3.832 15 N -0.613 5.613 16 C -0.221 4.221 17 H 0.080 0.920 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.128 3.872 25 O -0.339 6.339 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.035 -18.735 11.576 22.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.089 0.911 5 C -0.187 4.187 6 C -0.183 4.183 7 C -0.004 4.004 8 H 0.113 0.887 9 C 0.300 3.700 10 O -0.402 6.402 11 N -0.371 5.371 12 C 0.007 3.993 13 C -0.173 4.173 14 C 0.043 3.957 15 N -0.340 5.340 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.002 3.998 25 O -0.257 6.257 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.236 0.764 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.577 -18.869 10.762 21.875 hybrid contribution 0.598 1.379 0.210 1.517 sum -1.979 -17.491 10.972 20.742 Atomic orbital electron populations 1.21746 0.95173 1.01605 1.02447 1.21576 0.96893 0.94210 1.02718 1.23136 0.94127 0.94692 0.86898 0.91078 1.22998 0.95926 0.99310 1.00486 1.22919 0.96754 0.98645 1.00021 1.22855 0.90840 0.92060 0.94689 0.88697 1.20139 0.79492 0.80343 0.90057 1.90717 1.46521 1.54246 1.48699 1.45957 1.47012 1.33831 1.10349 1.21465 1.00032 0.96779 0.80976 1.23805 0.98736 0.94658 1.00071 1.22358 0.92550 0.86343 0.94431 1.46001 1.55580 1.02006 1.30366 1.19083 1.23572 0.82897 1.09359 0.90193 1.24789 1.00056 0.97779 0.97975 1.69821 1.40092 1.28161 1.18857 0.86043 0.78054 0.83984 0.77670 1.20458 1.21744 1.21715 1.22487 0.98339 0.86143 0.92858 1.89293 1.56818 1.42591 1.36988 0.91760 0.92748 0.92883 0.90914 0.90703 0.90308 0.90158 0.90038 0.89391 0.76394 0.91913 0.91330 0.89196 0.95461 0.90970 0.93725 0.93659 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.85 37.16 0.37 -0.88 16 2 C -0.12 -0.93 5.56 -26.73 -0.15 -1.08 16 3 C 0.07 0.62 3.25 -25.95 -0.08 0.54 16 4 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -1.10 6.63 -25.16 -0.17 -1.27 16 6 C -0.15 -1.23 6.61 -25.16 -0.17 -1.40 16 7 C 0.06 0.65 3.71 -27.10 -0.10 0.55 16 8 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 9 C 0.52 7.65 7.08 -10.98 -0.08 7.57 16 10 O -0.53 -10.18 16.55 -13.67 -0.23 -10.41 16 11 N -0.72 -9.70 5.54 -60.30 -0.33 -10.03 16 12 C 0.13 2.04 5.51 -4.04 -0.02 2.02 16 13 C -0.15 -2.68 3.93 -89.69 -0.35 -3.03 16 14 C 0.17 3.83 7.08 -2.83 -0.02 3.81 16 15 N -0.61 -15.64 3.70 -177.65 -0.66 -16.30 16 16 C -0.22 -6.22 10.70 -15.06 -0.16 -6.38 16 17 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 19 N -0.92 -27.13 11.39 55.49 0.63 -26.49 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C 0.13 2.57 8.51 -2.96 -0.03 2.55 16 25 O -0.34 -4.47 10.39 -54.46 -0.57 -5.03 16 26 H 0.06 0.65 8.01 -51.93 -0.42 0.24 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.56 7.87 -51.93 -0.41 0.16 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.75 7.87 -51.93 -0.41 0.35 16 34 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.40 4.48 8.47 -40.82 -0.35 4.13 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.18 7.87 -51.93 -0.41 0.77 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 40 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -34.26 351.34 -9.32 -43.58 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.39 Total: -0.30 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.06 Total: 2.63 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.36 Total: -52.83 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.79 Total: -15.44 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.26 -9.32 -43.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031708253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.095 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds