Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47411 * 2 1 4 4 H 1.09001 * 110.33099 * 52.75300 * 3 2 1 5 5 C 1.54483 * 110.36894 * 174.99701 * 3 2 1 6 6 C 1.54509 * 104.05875 * 142.81146 * 5 3 2 7 7 C 1.54484 * 104.06634 * 0.02562 * 6 5 3 8 8 H 1.08995 * 110.37389 * 94.95929 * 7 6 5 9 9 C 1.50700 * 110.37277 * 217.19106 * 7 6 5 10 10 O 1.21283 * 119.99803 * 114.99440 * 9 7 6 11 11 N 1.34777 * 119.99675 * 295.27316 * 9 7 6 12 12 C 1.46497 * 119.99525 * 179.72583 * 11 9 7 13 13 C 1.52999 * 109.46992 * 179.97438 * 12 11 9 14 14 C 1.53952 * 113.74292 * 273.74097 * 13 12 11 15 15 N 1.47813 * 86.03902 * 222.08314 * 14 13 12 16 16 C 1.36932 * 134.46046 * 204.64679 * 15 14 13 17 17 H 1.08003 * 120.00358 * 179.86918 * 16 15 14 18 18 C 1.38816 * 119.99533 * 359.86499 * 16 15 14 19 19 N 1.31617 * 120.00165 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99631 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47105 * 120.00056 * 20 18 16 23 23 H 1.48497 * 109.46727 * 239.99612 * 20 18 16 24 24 C 1.47589 * 91.04931 * 24.54686 * 15 14 13 25 25 O 1.44420 * 110.37560 * 290.38107 * 3 2 1 26 26 H 1.09005 * 109.46746 * 59.99278 * 1 2 3 27 27 H 1.08997 * 109.47608 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47012 * 300.00280 * 1 2 3 29 29 H 1.09000 * 109.47012 * 239.99720 * 2 1 3 30 30 H 1.09004 * 109.47282 * 120.00183 * 2 1 3 31 31 H 1.08997 * 110.51179 * 24.17005 * 5 3 2 32 32 H 1.09004 * 110.62941 * 261.51032 * 5 3 2 33 33 H 1.08997 * 110.51473 * 241.35571 * 6 5 3 34 34 H 1.09011 * 110.51247 * 118.64232 * 6 5 3 35 35 H 0.97000 * 119.99894 * 359.71837 * 11 9 7 36 36 H 1.08995 * 109.47421 * 299.99467 * 12 11 9 37 37 H 1.09001 * 109.47621 * 60.00103 * 12 11 9 38 38 H 1.08998 * 112.94600 * 45.33253 * 13 12 11 39 39 H 1.08998 * 113.77009 * 336.34864 * 14 13 12 40 40 H 1.09000 * 113.76911 * 107.74268 * 14 13 12 41 41 H 0.96998 * 119.99551 * 179.97438 * 19 18 16 42 42 H 1.09001 * 113.77057 * 221.14924 * 24 15 14 43 43 H 1.09003 * 113.86816 * 89.77015 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5831 2.0057 0.8136 5 6 3.5795 1.4684 0.1263 6 6 4.0108 2.6417 -0.7818 7 6 2.6810 3.1863 -1.3487 8 1 2.3237 4.0198 -0.7441 9 6 2.8590 3.6173 -2.7818 10 8 2.2698 3.0351 -3.6677 11 7 3.6773 4.6460 -3.0793 12 6 3.8549 5.0611 -4.4730 13 6 4.8266 6.2414 -4.5336 14 6 4.1512 7.6110 -4.3379 15 7 5.0224 8.0826 -5.4348 16 6 5.5197 9.3028 -5.8076 17 1 6.1566 9.3840 -6.6760 18 6 5.2049 10.4354 -5.0693 19 7 4.4282 10.3366 -4.0113 20 14 5.8827 12.1002 -5.5782 21 1 6.7225 11.9424 -6.7927 22 1 4.7576 13.0243 -5.8704 23 1 6.7070 12.6569 -4.4757 24 6 5.1432 6.7107 -5.9652 25 8 1.7632 2.0737 -1.2691 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 4.0078 0.5318 -0.2306 32 1 3.8771 1.6547 1.1582 33 1 4.6524 2.2853 -1.5875 34 1 4.5195 3.4093 -0.1983 35 1 4.1484 5.1116 -2.3707 36 1 4.2567 4.2293 -5.0515 37 1 2.8929 5.3613 -4.8882 38 1 5.7112 6.0959 -3.9138 39 1 3.0899 7.6170 -4.5863 40 1 4.3664 8.0733 -3.3745 41 1 4.2087 11.1280 -3.4953 42 1 6.1491 6.4556 -6.2988 43 1 4.3749 6.4499 -6.6931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031708253.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = -62.422239 kcal Electronic energy + Delta-G solvation = -22088.789128 eV Core-core repulsion = 18748.415087 eV Total energy + Delta-G solvation = -3340.374041 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38429 -40.08029 -39.27836 -35.79476 -34.57362 -34.19051 -33.05959 -30.92326 -29.50861 -27.45558 -26.54394 -25.24574 -23.65468 -22.78915 -21.94824 -21.54300 -20.57909 -18.77482 -18.24128 -17.66381 -17.39235 -16.97123 -16.58095 -16.22977 -15.74637 -15.57455 -14.97326 -14.80066 -14.57149 -14.50045 -14.21361 -14.06314 -13.92154 -13.32233 -13.10709 -12.91616 -12.86386 -12.66108 -12.52478 -12.36200 -12.21929 -11.89037 -11.81706 -11.69107 -11.58059 -11.49861 -11.27658 -10.96857 -10.87797 -10.60113 -10.09140 -8.92062 -7.91027 -5.24120 1.45837 1.46830 1.54638 1.57006 1.92033 2.47231 3.03289 3.29924 3.38577 3.49889 3.62186 3.76248 3.93108 3.95580 4.07055 4.18470 4.21661 4.35290 4.37224 4.39905 4.58517 4.61499 4.76910 4.78222 4.85673 4.87107 4.91979 4.95658 5.04535 5.08802 5.09564 5.17312 5.23284 5.25742 5.39555 5.43195 5.54829 5.64800 5.86537 5.94096 6.54373 6.92573 7.20744 7.60557 8.56215 9.26037 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038435 B = 0.002769 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.320503 B =10108.973403 C =10312.313281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.060 3.940 4 H 0.084 0.916 5 C -0.143 4.143 6 C -0.141 4.141 7 C 0.056 3.944 8 H 0.116 0.884 9 C 0.513 3.487 10 O -0.579 6.579 11 N -0.708 5.708 12 C 0.142 3.858 13 C -0.112 4.112 14 C 0.165 3.835 15 N -0.646 5.646 16 C -0.234 4.234 17 H 0.083 0.917 18 C -0.069 4.069 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.289 1.289 24 C 0.125 3.875 25 O -0.377 6.377 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.416 0.584 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.009 0.991 40 H 0.047 0.953 41 H 0.248 0.752 42 H 0.064 0.936 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 -19.561 12.888 23.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.003 3.997 4 H 0.102 0.898 5 C -0.181 4.181 6 C -0.178 4.178 7 C -0.005 4.005 8 H 0.133 0.867 9 C 0.299 3.701 10 O -0.458 6.458 11 N -0.361 5.361 12 C 0.017 3.983 13 C -0.132 4.132 14 C 0.040 3.960 15 N -0.373 5.373 16 C -0.363 4.363 17 H 0.101 0.899 18 C -0.262 4.262 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.190 1.190 22 H -0.222 1.222 23 H -0.216 1.216 24 C 0.000 4.000 25 O -0.296 6.296 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.090 0.910 34 H 0.134 0.866 35 H 0.253 0.747 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.127 0.873 39 H 0.027 0.973 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.082 0.918 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.112 -19.715 12.084 23.151 hybrid contribution 0.110 1.585 -0.227 1.605 sum -1.002 -18.130 11.857 21.686 Atomic orbital electron populations 1.21740 0.95637 1.02020 1.01542 1.21624 0.96521 0.93952 1.03261 1.23412 0.95631 0.94958 0.85654 0.89774 1.23013 0.94405 0.98882 1.01788 1.22962 0.94964 0.99777 1.00146 1.22979 0.92600 0.92652 0.92227 0.86677 1.20837 0.78339 0.79585 0.91306 1.90689 1.48558 1.55984 1.50543 1.45817 1.46788 1.33552 1.09915 1.21192 0.98502 0.96168 0.82389 1.23397 0.98758 0.92492 0.98524 1.22279 0.91691 0.89327 0.92695 1.46433 1.55940 1.03080 1.31806 1.19471 1.23288 0.84351 1.09163 0.89914 1.25630 1.00931 1.01290 0.98318 1.69997 1.41578 1.28646 1.19954 0.85006 0.77229 0.79413 0.77652 1.19030 1.22209 1.21587 1.22699 0.99593 0.83422 0.94333 1.89273 1.57714 1.43389 1.39252 0.94545 0.91719 0.91833 0.92420 0.87980 0.90236 0.87412 0.91011 0.86576 0.74725 0.90728 0.93209 0.87315 0.97274 0.93422 0.94263 0.91828 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.85 71.98 0.71 -1.67 16 2 C -0.12 -1.69 5.56 30.59 0.17 -1.52 16 3 C 0.06 0.98 3.25 31.10 0.10 1.08 16 4 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 5 C -0.14 -1.69 6.63 31.61 0.21 -1.48 16 6 C -0.14 -2.01 6.61 31.61 0.21 -1.80 16 7 C 0.06 1.21 3.71 30.35 0.11 1.32 16 8 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 9 C 0.51 14.97 7.08 87.66 0.62 15.59 16 10 O -0.58 -22.78 16.55 15.35 0.25 -22.53 16 11 N -0.71 -18.22 5.54 -463.07 -2.56 -20.79 16 12 C 0.14 4.27 5.51 86.38 0.48 4.75 16 13 C -0.11 -3.78 3.93 -10.13 -0.04 -3.82 16 14 C 0.17 7.60 7.08 86.44 0.61 8.21 16 15 N -0.65 -32.89 3.70 -715.96 -2.65 -35.54 16 16 C -0.23 -13.15 10.70 84.04 0.90 -12.25 16 17 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 19 N -0.95 -57.02 11.39 21.65 0.25 -56.77 16 20 Si 0.98 45.59 29.55 68.60 2.03 47.62 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 C 0.12 4.83 8.51 86.48 0.74 5.57 16 25 O -0.38 -9.79 10.39 -130.59 -1.36 -11.15 16 26 H 0.04 0.76 8.01 -2.38 -0.02 0.74 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 0.94 7.87 -2.39 -0.02 0.92 16 32 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 1.18 7.87 -2.39 -0.02 1.16 16 34 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.42 8.42 8.47 -92.71 -0.79 7.63 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.05 1.72 7.87 -2.39 -0.02 1.70 16 38 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.01 0.46 7.92 -2.39 -0.02 0.44 16 40 H 0.05 2.41 7.17 -2.39 -0.02 2.39 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 43 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 Total: -1.00 -76.13 351.34 1.44 -74.69 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.20 Total: 13.94 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 5.28 Total: 10.52 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.97 Total: -113.10 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.10 Total: -33.68 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -76.13 1.44 -74.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031708253.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.271 kcal (2) G-P(sol) polarization free energy of solvation -76.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds