Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47452 * 2 1 4 4 H 1.08999 * 110.41631 * 304.14459 * 3 2 1 5 5 C 1.54472 * 110.37296 * 181.83047 * 3 2 1 6 6 C 1.54509 * 104.06562 * 217.19102 * 5 3 2 7 7 C 1.54480 * 104.05885 * 0.02562 * 6 5 3 8 8 H 1.08994 * 110.46498 * 265.09327 * 7 6 5 9 9 C 1.50701 * 110.36872 * 142.81002 * 7 6 5 10 10 O 1.21283 * 120.00145 * 248.16299 * 9 7 6 11 11 N 1.34779 * 120.00015 * 68.16470 * 9 7 6 12 12 C 1.46505 * 119.99685 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46813 * 179.97438 * 12 11 9 14 14 C 1.53499 * 114.20829 * 174.99788 * 13 12 11 15 15 N 1.47072 * 87.98353 * 87.52248 * 14 13 12 16 16 C 1.36931 * 136.06174 * 207.08639 * 15 14 13 17 17 H 1.08002 * 120.00103 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00576 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00326 * 20 18 16 23 23 H 1.48498 * 109.47210 * 150.00037 * 20 18 16 24 24 C 1.47073 * 87.88066 * 27.34363 * 15 14 13 25 25 O 1.44425 * 104.80374 * 23.98165 * 7 6 5 26 26 H 1.09011 * 109.46733 * 59.99860 * 1 2 3 27 27 H 1.08998 * 109.47151 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47174 * 300.00594 * 1 2 3 29 29 H 1.09004 * 109.47611 * 239.99905 * 2 1 3 30 30 H 1.08997 * 109.47193 * 119.99918 * 2 1 3 31 31 H 1.09007 * 110.51503 * 335.84086 * 5 3 2 32 32 H 1.08999 * 110.51347 * 98.40957 * 5 3 2 33 33 H 1.09002 * 110.51403 * 241.35933 * 6 5 3 34 34 H 1.08998 * 110.51102 * 118.64627 * 6 5 3 35 35 H 0.96994 * 120.00121 * 359.97438 * 11 9 7 36 36 H 1.09001 * 109.46982 * 60.00444 * 12 11 9 37 37 H 1.08996 * 109.47328 * 300.00120 * 12 11 9 38 38 H 1.09004 * 113.28322 * 41.94217 * 13 12 11 39 39 H 1.09001 * 113.46653 * 332.75161 * 14 13 12 40 40 H 1.08997 * 113.47364 * 202.29965 * 14 13 12 41 41 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 42 42 H 1.09004 * 113.46473 * 87.44273 * 24 15 14 43 43 H 1.09001 * 113.46655 * 217.87607 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6263 1.9921 -0.8454 5 6 3.5839 1.4670 -0.0463 6 6 3.9680 2.6570 0.8613 7 6 2.6106 3.2103 1.3490 8 1 2.2830 4.0319 0.7122 9 6 2.7146 3.6675 2.7813 10 8 2.1259 3.0656 3.6542 11 7 3.4619 4.7452 3.0921 12 6 3.5625 5.1898 4.4844 13 6 4.4644 6.4234 4.5618 14 6 4.5491 7.0544 5.9585 15 7 5.6544 6.1297 6.2524 16 6 6.1813 5.5477 7.3743 17 1 5.7494 5.7529 8.3427 18 6 7.2707 4.6941 7.2671 19 7 7.7974 4.4444 6.0869 20 14 7.9899 3.9007 8.7976 21 1 9.0481 4.7781 9.3593 22 1 6.9174 3.7104 9.8070 23 1 8.5759 2.5830 8.4434 24 6 5.9488 6.1102 4.8115 25 8 1.6979 2.0962 1.2419 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9927 0.5372 0.3496 32 1 3.9329 1.6331 -1.0654 33 1 4.5067 3.4139 0.2912 34 1 4.5666 2.3157 1.7058 35 1 3.9331 5.2264 2.3940 36 1 3.9880 4.3905 5.0912 37 1 2.5700 5.4409 4.8583 38 1 4.2863 7.1384 3.7586 39 1 3.6630 6.8792 6.5685 40 1 4.8515 8.1015 5.9443 41 1 8.5589 3.8481 6.0120 42 1 6.6201 6.9084 4.4948 43 1 6.2550 5.1307 4.4443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031708254.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = -34.089562 kcal Electronic energy + Delta-G solvation = -22478.711718 eV Core-core repulsion = 19139.566274 eV Total energy + Delta-G solvation = -3339.145444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29475 -38.83522 -37.90943 -34.24388 -33.77165 -32.34179 -32.04097 -29.42444 -28.11953 -25.98637 -24.61049 -24.17041 -22.37940 -21.94688 -21.16579 -20.23161 -18.79561 -17.06195 -16.79573 -16.63621 -16.30885 -15.50634 -14.93970 -14.79946 -14.47082 -14.06655 -13.80683 -13.70790 -13.65224 -13.32389 -13.02091 -12.62685 -12.48652 -11.92994 -11.89816 -11.63549 -11.52701 -11.12428 -11.09089 -10.99156 -10.92893 -10.80964 -10.71804 -10.53244 -10.03783 -9.90259 -9.80683 -9.42597 -9.23138 -8.80368 -8.66394 -6.87576 -5.76045 -3.08026 2.82928 3.05896 3.40987 3.46075 3.48029 3.96279 4.33782 4.47426 4.49991 4.69784 4.79718 4.89610 4.98751 5.10369 5.14874 5.27101 5.31221 5.34547 5.38243 5.45025 5.58817 5.61047 5.63491 5.75193 5.82460 5.90060 5.98116 6.01787 6.15493 6.16469 6.36528 6.52280 6.59373 6.64442 6.68869 6.84170 7.17464 7.28901 7.55523 7.77725 7.98759 8.48559 9.04910 9.71670 10.64493 11.41464 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021478 B = 0.003582 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.375469 B = 7814.814731 C = 8344.923552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.070 0.930 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.059 3.941 8 H 0.091 0.909 9 C 0.514 3.486 10 O -0.523 6.523 11 N -0.719 5.719 12 C 0.152 3.848 13 C -0.161 4.161 14 C 0.127 3.873 15 N -0.609 5.609 16 C -0.217 4.217 17 H 0.081 0.919 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.280 1.280 23 H -0.290 1.290 24 C 0.159 3.841 25 O -0.339 6.339 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.398 0.602 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.042 0.958 40 H 0.036 0.964 41 H 0.253 0.747 42 H 0.025 0.975 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 -2.499 -17.195 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.012 3.988 4 H 0.088 0.912 5 C -0.187 4.187 6 C -0.184 4.184 7 C -0.002 4.002 8 H 0.109 0.891 9 C 0.298 3.702 10 O -0.398 6.398 11 N -0.372 5.372 12 C 0.030 3.970 13 C -0.181 4.181 14 C 0.000 4.000 15 N -0.335 5.335 16 C -0.344 4.344 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.205 1.205 23 H -0.216 1.216 24 C 0.033 3.967 25 O -0.257 6.257 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.231 0.769 36 H 0.102 0.898 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.329 -3.243 -16.169 19.459 hybrid contribution 1.062 0.102 0.302 1.109 sum -9.267 -3.141 -15.867 18.641 Atomic orbital electron populations 1.21729 0.95226 1.01544 1.02365 1.21582 0.96861 0.94239 1.02780 1.23127 0.93779 0.94396 0.87473 0.91226 1.22995 0.95868 0.99438 1.00406 1.22912 0.96441 0.98375 1.00626 1.22824 0.90883 0.91738 0.94783 0.89148 1.20094 0.79579 0.80596 0.89892 1.90731 1.44972 1.54608 1.49460 1.45924 1.50262 1.30170 1.10816 1.21020 0.98556 0.96765 0.80699 1.23311 0.99680 0.96519 0.98592 1.22353 0.92309 0.93642 0.91737 1.45639 1.34472 1.49948 1.03484 1.18941 1.10260 1.20144 0.85094 0.90135 1.24775 0.98338 1.00298 0.97008 1.69819 1.25610 1.39866 1.21440 0.86116 0.79029 0.78608 0.82030 1.21670 1.20532 1.21621 1.22196 0.89325 1.00151 0.85042 1.89291 1.54849 1.41777 1.39788 0.92996 0.92793 0.91729 0.90731 0.90851 0.90214 0.90254 0.89502 0.89646 0.76887 0.89839 0.92196 0.91066 0.93980 0.94633 0.93743 0.95768 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.83 37.16 0.37 -1.00 16 2 C -0.12 -1.07 5.57 -26.73 -0.15 -1.22 16 3 C 0.07 0.70 3.28 -25.96 -0.09 0.62 16 4 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 5 C -0.15 -1.34 6.63 -25.17 -0.17 -1.51 16 6 C -0.15 -1.52 6.62 -25.16 -0.17 -1.69 16 7 C 0.06 0.74 3.71 -27.11 -0.10 0.64 16 8 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 9 C 0.51 8.48 7.07 -10.98 -0.08 8.40 16 10 O -0.52 -11.26 16.56 -13.64 -0.23 -11.49 16 11 N -0.72 -10.74 5.56 -60.29 -0.33 -11.07 16 12 C 0.15 2.75 5.51 -4.04 -0.02 2.73 16 13 C -0.16 -2.84 4.18 -89.97 -0.38 -3.22 16 14 C 0.13 2.54 8.25 -8.50 -0.07 2.47 16 15 N -0.61 -15.53 3.61 -184.59 -0.67 -16.20 16 16 C -0.22 -6.14 10.75 -15.06 -0.16 -6.31 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.31 11.50 55.49 0.64 -26.67 16 20 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 C 0.16 3.59 6.92 -8.37 -0.06 3.53 16 25 O -0.34 -4.82 10.26 -54.42 -0.56 -5.38 16 26 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 35 H 0.40 4.60 8.47 -40.82 -0.35 4.25 16 36 H 0.08 1.90 7.92 -51.93 -0.41 1.48 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 1.86 7.09 -51.93 -0.37 1.49 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -34.60 351.27 -9.44 -44.04 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.39 Total: 0.86 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.16 Total: 3.14 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.36 Total: -53.94 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.78 Total: -16.87 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.60 -9.44 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031708254.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.946 kcal (2) G-P(sol) polarization free energy of solvation -34.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds