Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08995 * 110.43552 * 54.30043 * 3 2 1 5 5 C 1.54805 * 110.49230 * 291.75216 * 3 2 1 6 6 C 1.55222 * 101.99045 * 220.52173 * 5 3 2 7 7 O 1.44378 * 103.56715 * 36.88206 * 6 5 3 8 8 C 1.43750 * 106.97161 * 320.01059 * 7 6 5 9 9 H 1.08995 * 109.87711 * 267.08504 * 8 7 6 10 10 C 1.50707 * 109.87703 * 145.93795 * 8 7 6 11 11 O 1.21279 * 119.99822 * 357.17005 * 10 8 7 12 12 N 1.34770 * 119.99862 * 177.17098 * 10 8 7 13 13 C 1.46499 * 120.00063 * 180.02562 * 12 10 8 14 14 C 1.53001 * 109.47514 * 179.97438 * 13 12 10 15 15 C 1.53940 * 113.74454 * 273.74157 * 14 13 12 16 16 N 1.47807 * 86.03680 * 222.08301 * 15 14 13 17 17 C 1.36941 * 134.45846 * 204.64746 * 16 15 14 18 18 H 1.07995 * 120.00581 * 179.86342 * 17 16 15 19 19 C 1.38813 * 119.99592 * 359.85880 * 17 16 15 20 20 N 1.31620 * 120.00139 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99886 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47221 * 90.00363 * 21 19 17 23 23 H 1.48504 * 109.47273 * 210.00639 * 21 19 17 24 24 H 1.48497 * 109.47198 * 329.99999 * 21 19 17 25 25 C 1.47578 * 91.05147 * 24.54793 * 16 15 14 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 1.09002 * 110.90948 * 338.64370 * 5 3 2 32 32 H 1.09005 * 110.91067 * 102.24680 * 5 3 2 33 33 H 1.09001 * 110.52207 * 278.38552 * 6 5 3 34 34 H 1.09007 * 110.78107 * 155.49870 * 6 5 3 35 35 H 0.97000 * 120.00280 * 359.97438 * 12 10 8 36 36 H 1.09004 * 109.47117 * 299.99513 * 13 12 10 37 37 H 1.09007 * 109.47289 * 59.99372 * 13 12 10 38 38 H 1.09008 * 112.94028 * 45.33280 * 14 13 12 39 39 H 1.09000 * 113.77049 * 336.34719 * 15 14 13 40 40 H 1.08999 * 113.77074 * 107.74107 * 15 14 13 41 41 H 0.97002 * 120.00075 * 179.97438 * 20 19 17 42 42 H 1.09001 * 113.76678 * 221.15203 * 25 16 15 43 43 H 1.09003 * 113.87285 * 89.76962 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 2.0000 0.8294 5 6 1.7139 2.1326 -1.3468 6 6 3.0113 2.9404 -1.6177 7 8 4.0584 2.0713 -1.1352 8 6 3.5786 1.4707 0.0795 9 1 3.8948 2.0650 0.9368 10 6 4.1112 0.0662 0.2018 11 8 4.7903 -0.4043 -0.6862 12 7 3.8329 -0.6670 1.2978 13 6 4.3510 -2.0321 1.4169 14 6 3.8934 -2.6373 2.7456 15 6 4.8226 -2.3101 3.9285 16 7 4.6402 -3.7211 4.3291 17 6 4.7285 -4.4006 5.5148 18 1 4.5402 -5.4636 5.5434 19 6 5.0600 -3.7229 6.6800 20 7 5.2891 -2.4272 6.6453 21 14 5.1812 -4.6498 8.2973 22 1 6.5699 -5.1416 8.4831 23 1 4.8238 -3.7414 9.4164 24 1 4.2460 -5.8031 8.2781 25 6 4.3223 -4.1030 2.9395 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.5446 1.3947 -2.1311 32 1 0.8544 2.7954 -1.2463 33 1 3.0020 3.8767 -1.0596 34 1 3.1323 3.1317 -2.6840 35 1 3.2901 -0.2906 2.0082 36 1 3.9736 -2.6372 0.5926 37 1 5.4404 -2.0115 1.3835 38 1 2.8385 -2.4576 2.9534 39 1 5.8426 -2.0661 3.6315 40 1 4.4007 -1.5939 4.6335 41 1 5.5204 -1.9536 7.4596 42 1 3.5017 -4.8156 2.8564 43 1 5.1939 -4.3874 2.3498 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031740245.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -27.702192 kcal Electronic energy + Delta-G solvation = -22807.432140 eV Core-core repulsion = 19468.563673 eV Total energy + Delta-G solvation = -3338.868467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75993 -38.67156 -37.73189 -35.27251 -34.06565 -32.18792 -30.61607 -29.98841 -28.41562 -25.84351 -24.79914 -23.97163 -23.03049 -21.95819 -21.19184 -20.10015 -18.86730 -17.14937 -16.95884 -16.66548 -16.25373 -15.44398 -15.18412 -14.90519 -14.76638 -14.53988 -13.92067 -13.71713 -13.58095 -13.28240 -12.96957 -12.69621 -12.41979 -12.25096 -11.84471 -11.51364 -11.42893 -11.36323 -11.29604 -11.00851 -10.90864 -10.84535 -10.71697 -10.58851 -10.20589 -9.94414 -9.74193 -9.49749 -9.33680 -8.80939 -8.72300 -6.88886 -5.78130 -3.10155 2.70651 3.02151 3.38358 3.43262 3.44987 3.86393 4.14222 4.38085 4.44364 4.55068 4.77674 4.91292 4.95786 5.10588 5.17623 5.18380 5.21495 5.30579 5.36036 5.38138 5.44617 5.55144 5.60187 5.64969 5.77014 5.82479 5.88976 5.95157 6.03244 6.11671 6.24329 6.35351 6.51718 6.58581 6.64586 6.75491 7.20622 7.34216 7.53575 7.63943 7.96885 8.35148 9.03616 9.69805 10.58826 11.39077 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.003377 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.603975 B = 8288.198156 C = 8406.733915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.138 4.138 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.148 4.148 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.060 3.940 9 H 0.095 0.905 10 C 0.517 3.483 11 O -0.527 6.527 12 N -0.720 5.720 13 C 0.130 3.870 14 C -0.152 4.152 15 C 0.168 3.832 16 N -0.613 5.613 17 C -0.223 4.223 18 H 0.080 0.920 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.128 3.872 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.402 0.598 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.027 0.973 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.296 10.792 -14.283 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C -0.132 4.132 4 H 0.112 0.888 5 C -0.185 4.185 6 C -0.034 4.034 7 O -0.265 6.265 8 C -0.002 4.002 9 H 0.113 0.887 10 C 0.302 3.698 11 O -0.402 6.402 12 N -0.375 5.375 13 C 0.007 3.993 14 C -0.172 4.172 15 C 0.043 3.957 16 N -0.339 5.339 17 C -0.350 4.350 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.002 3.998 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.113 0.887 35 H 0.238 0.762 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.526 10.360 -14.669 20.329 hybrid contribution -0.178 -0.199 1.394 1.420 sum -9.704 10.161 -13.275 19.329 Atomic orbital electron populations 1.21753 0.95267 1.01960 1.01631 1.22084 0.96594 0.94769 1.04105 1.22572 0.93029 0.98371 0.99187 0.88797 1.23265 0.98453 0.99734 0.97078 1.23664 0.86097 0.93173 1.00443 1.89016 1.38249 1.60297 1.38922 1.22771 0.94049 0.92969 0.90364 0.88748 1.20231 0.80295 0.86951 0.82362 1.90707 1.37768 1.72117 1.39600 1.46212 1.54350 1.16032 1.20865 1.21459 0.99187 0.80743 0.97952 1.23798 1.01112 0.98329 0.93985 1.22357 0.94335 0.88814 0.90201 1.45985 1.81384 1.05311 1.01196 1.19039 1.40587 0.92077 0.83346 0.90263 1.24776 1.01958 0.95974 0.97760 1.69811 1.53332 1.06739 1.27050 0.86124 0.77800 0.78555 0.83307 1.21626 1.21633 1.20625 1.22482 0.96886 0.93197 0.87262 0.92445 0.92563 0.92939 0.89535 0.91432 0.90123 0.89889 0.91942 0.88684 0.76203 0.91902 0.91385 0.89225 0.95480 0.90977 0.93676 0.93688 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.78 37.16 0.36 -0.81 16 2 C -0.14 -1.30 4.12 -26.73 -0.11 -1.41 16 3 C -0.11 -0.97 3.05 -89.09 -0.27 -1.24 16 4 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 5 C -0.15 -1.13 5.95 -24.60 -0.15 -1.27 16 6 C 0.04 0.37 7.72 38.33 0.30 0.67 16 7 O -0.35 -4.65 10.74 -54.81 -0.59 -5.24 16 8 C 0.06 0.70 3.84 -27.30 -0.10 0.59 16 9 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 10 C 0.52 7.61 5.65 -10.98 -0.06 7.55 16 11 O -0.53 -10.10 16.53 -14.02 -0.23 -10.33 16 12 N -0.72 -9.56 3.78 -60.29 -0.23 -9.79 16 13 C 0.13 1.99 5.51 -4.04 -0.02 1.97 16 14 C -0.15 -2.64 3.93 -89.70 -0.35 -3.00 16 15 C 0.17 3.81 7.08 -2.84 -0.02 3.79 16 16 N -0.61 -15.55 3.70 -177.74 -0.66 -16.21 16 17 C -0.22 -6.24 10.70 -15.06 -0.16 -6.41 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.92 -27.08 11.39 55.49 0.63 -26.45 16 21 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.56 8.51 -2.97 -0.03 2.53 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 7.55 -51.93 -0.39 -0.02 16 29 H 0.09 0.86 4.93 -51.93 -0.26 0.61 16 30 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 31 H 0.08 0.67 7.80 -51.93 -0.41 0.27 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 4.49 7.50 -40.82 -0.31 4.19 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 38 H 0.09 1.47 8.14 -51.92 -0.42 1.05 16 39 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 40 H 0.07 1.78 7.16 -51.93 -0.37 1.41 16 41 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -34.07 342.42 -8.79 -42.86 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.14 Total: 0.34 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.71 Total: 2.63 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.25 Total: -52.45 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.82 Total: -15.57 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.07 -8.79 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031740245.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.163 kcal (2) G-P(sol) polarization free energy of solvation -34.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds