Wall clock time and date at job start Tue Mar 31 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47311 * 2 1 4 4 H 1.09005 * 115.54467 * 29.33133 * 3 2 1 5 5 C 1.53065 * 117.49440 * 243.60358 * 3 2 1 6 6 C 1.52995 * 117.49832 * 174.99803 * 3 2 1 7 7 H 1.09000 * 117.50057 * 359.97438 * 6 3 2 8 8 C 1.50701 * 117.49975 * 214.97858 * 6 3 2 9 9 O 1.21287 * 119.99658 * 0.08997 * 8 6 3 10 10 N 1.34767 * 120.00101 * 180.09208 * 8 6 3 11 11 C 1.46507 * 120.00169 * 180.02562 * 10 8 6 12 12 C 1.52996 * 109.47107 * 179.97438 * 11 10 8 13 13 H 1.08997 * 109.51342 * 60.10286 * 12 11 10 14 14 C 1.53290 * 109.51004 * 180.25280 * 12 11 10 15 15 N 1.47161 * 108.38494 * 172.22770 * 14 12 11 16 16 C 1.36932 * 120.98131 * 129.44255 * 15 14 12 17 17 H 1.08002 * 119.99659 * 206.24646 * 16 15 14 18 18 C 1.38814 * 120.00195 * 26.25300 * 16 15 14 19 19 N 1.31612 * 119.99949 * 16.90100 * 18 16 15 20 20 Si 1.86805 * 119.99943 * 196.89946 * 18 16 15 21 21 H 1.48497 * 109.46696 * 59.99755 * 20 18 16 22 22 H 1.48495 * 109.47064 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47085 * 300.00085 * 20 18 16 24 24 C 1.47149 * 118.03477 * 309.46192 * 15 14 12 25 25 C 1.53294 * 108.38286 * 50.53512 * 24 15 14 26 26 O 1.42960 * 109.22663 * 307.69874 * 25 24 15 27 27 H 1.08998 * 109.47397 * 299.99978 * 1 2 3 28 28 H 1.09000 * 109.46986 * 59.99967 * 1 2 3 29 29 H 1.09004 * 109.47313 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47138 * 240.00293 * 2 1 3 31 31 H 1.09000 * 109.46986 * 120.00033 * 2 1 3 32 32 H 1.09000 * 117.51705 * 145.03802 * 5 3 2 33 33 H 1.09005 * 117.49741 * 359.97438 * 5 3 2 34 34 H 0.97007 * 120.00264 * 359.97438 * 10 8 6 35 35 H 1.08997 * 109.46856 * 59.99663 * 11 10 8 36 36 H 1.09000 * 109.46371 * 299.99891 * 11 10 8 37 37 H 1.09004 * 109.68583 * 291.94732 * 14 12 11 38 38 H 1.08999 * 109.68557 * 52.50001 * 14 12 11 39 39 H 0.97008 * 119.99897 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.68015 * 290.81702 * 24 15 14 41 41 H 1.08994 * 109.68480 * 170.26080 * 24 15 14 42 42 H 1.08999 * 109.51529 * 187.77561 * 25 24 15 43 43 H 1.09001 * 109.51618 * 67.62036 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3884 2.1715 0.4818 5 6 2.8447 1.9075 -1.2162 6 6 3.5501 1.6578 0.1183 7 1 4.1803 0.7719 0.1966 8 6 4.0229 2.8619 0.8914 9 8 3.2158 3.6158 1.3928 10 7 5.3424 3.1011 1.0256 11 6 5.8020 4.2714 1.7777 12 6 7.3315 4.3087 1.7784 13 1 7.6945 4.3729 0.7527 14 6 7.8134 5.5295 2.5704 15 7 9.2752 5.4410 2.7155 16 6 10.0809 6.5002 2.3929 17 1 11.1042 6.3285 2.0931 18 6 9.5826 7.7945 2.4513 19 7 8.4758 8.0440 3.1184 20 14 10.4829 9.1820 1.5832 21 1 10.5560 8.8909 0.1289 22 1 9.7518 10.4567 1.7973 23 1 11.8569 9.3014 2.1338 24 6 9.8454 4.1807 3.2172 25 6 9.2644 3.0256 2.3936 26 8 7.8379 3.1204 2.3908 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8900 32 1 2.7226 2.9427 -1.5350 33 1 3.0108 1.1855 -2.0158 34 1 5.9879 2.4980 0.6249 35 1 5.4399 4.2089 2.8039 36 1 5.4162 5.1776 1.3108 37 1 7.5524 6.4417 2.0339 38 1 7.3464 5.5359 3.5553 39 1 8.1277 8.9485 3.1595 40 1 9.5829 4.0512 4.2672 41 1 10.9298 4.1996 3.1090 42 1 9.5653 2.0758 2.8357 43 1 9.6352 3.0854 1.3704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035511682.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:49 Heat of formation + Delta-G solvation = -46.517195 kcal Electronic energy + Delta-G solvation = -22289.198535 eV Core-core repulsion = 18949.514189 eV Total energy + Delta-G solvation = -3339.684347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.95009 -38.56702 -37.11809 -34.75670 -34.28676 -32.29424 -31.36741 -30.86757 -27.51391 -26.01588 -24.22162 -23.61660 -23.22268 -21.58842 -20.70685 -20.14852 -19.47338 -17.30736 -16.94587 -16.01491 -15.79776 -15.17966 -15.04147 -14.83944 -14.39055 -14.34901 -14.16035 -13.87315 -13.28331 -13.04309 -12.90185 -12.69964 -12.56015 -12.32637 -12.15303 -11.58586 -11.51496 -11.24566 -11.11758 -10.85032 -10.75587 -10.45728 -10.41767 -10.31010 -10.20050 -10.04905 -9.73254 -9.63760 -9.09466 -8.82610 -8.57010 -6.78391 -5.86748 -3.30643 2.60392 3.26179 3.34093 3.39926 3.40658 3.71693 4.23412 4.41830 4.48232 4.60700 4.68091 4.95690 5.07987 5.12136 5.17873 5.22202 5.33562 5.45864 5.51791 5.58887 5.62089 5.70336 5.78133 5.84326 5.86884 5.90829 5.91803 6.01786 6.10454 6.18194 6.23858 6.36129 6.48705 6.68341 6.76015 7.04473 7.45522 7.67972 7.70952 7.81956 8.30616 8.40180 9.08266 9.71319 10.28374 11.21372 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027796 B = 0.003236 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.089461 B = 8650.836836 C = 9213.091967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.119 4.119 4 H 0.118 0.882 5 C -0.150 4.150 6 C -0.189 4.189 7 H 0.122 0.878 8 C 0.538 3.462 9 O -0.547 6.547 10 N -0.715 5.715 11 C 0.132 3.868 12 C 0.055 3.945 13 H 0.056 0.944 14 C 0.153 3.847 15 N -0.594 5.594 16 C -0.258 4.258 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.031 0.969 39 H 0.257 0.743 40 H 0.027 0.973 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 -15.439 -7.915 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.136 0.864 5 C -0.187 4.187 6 C -0.210 4.210 7 H 0.140 0.860 8 C 0.324 3.676 9 O -0.425 6.425 10 N -0.365 5.365 11 C 0.008 3.992 12 C -0.004 4.004 13 H 0.074 0.926 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.998 -14.825 -7.419 19.359 hybrid contribution 1.168 0.705 -0.594 1.488 sum -8.830 -14.120 -8.013 18.481 Atomic orbital electron populations 1.21740 0.95234 1.01533 1.02185 1.21155 0.96230 0.93736 1.02093 1.22479 0.91587 0.98603 1.01115 0.86421 1.23105 1.02213 1.03124 0.90298 1.22310 0.97590 0.99134 1.01963 0.86018 1.19631 0.82402 0.85542 0.80039 1.90692 1.54013 1.48848 1.48908 1.45901 1.06704 1.28788 1.55133 1.21424 0.92765 0.87929 0.97037 1.23145 0.91422 0.88644 0.97196 0.92634 1.21309 0.84000 0.94569 0.97531 1.44042 1.01936 1.10678 1.75170 1.19143 0.95646 0.84602 1.39335 0.91383 1.25066 0.98188 0.97410 0.98930 1.70007 1.23140 1.20162 1.41251 0.86322 0.79079 0.81375 0.79713 1.20956 1.21484 1.20795 1.21602 0.97329 0.87220 0.95604 1.23006 0.81204 0.99008 0.99575 1.87775 1.20989 1.41044 1.81168 0.92453 0.92549 0.92704 0.91730 0.91407 0.88291 0.87935 0.76330 0.90774 0.90061 0.88588 0.95059 0.93311 0.95549 0.91964 0.90015 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.87 37.16 0.37 -0.70 16 2 C -0.09 -0.74 6.22 -26.73 -0.17 -0.91 16 3 C -0.12 -1.20 5.25 -90.59 -0.48 -1.68 16 4 H 0.12 1.41 7.60 -51.93 -0.39 1.02 16 5 C -0.15 -1.39 9.88 -26.70 -0.26 -1.66 16 6 C -0.19 -2.06 5.91 -91.77 -0.54 -2.60 16 7 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 8 C 0.54 8.09 7.61 -10.99 -0.08 8.01 16 9 O -0.55 -10.33 16.26 5.55 0.09 -10.24 16 10 N -0.72 -10.49 5.45 -60.29 -0.33 -10.82 16 11 C 0.13 2.30 5.37 -4.04 -0.02 2.27 16 12 C 0.06 1.05 2.87 -26.58 -0.08 0.98 16 13 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 14 C 0.15 3.61 4.73 -3.53 -0.02 3.59 16 15 N -0.59 -14.82 3.05 -171.83 -0.52 -15.35 16 16 C -0.26 -6.98 9.65 -15.06 -0.15 -7.13 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 18 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.91 11.14 55.49 0.62 -25.29 16 20 Si 0.91 21.37 29.59 -169.99 -5.03 16.34 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.11 2.26 6.73 -3.54 -0.02 2.23 16 25 C 0.05 0.87 6.98 37.31 0.26 1.13 16 26 O -0.39 -7.24 10.13 -35.23 -0.36 -7.60 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 0.73 8.03 -51.93 -0.42 0.31 16 34 H 0.40 5.07 8.35 -40.82 -0.34 4.73 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.22 7.96 -51.93 -0.41 0.80 16 42 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 350.95 15.07 5.29 5.29 Total: -1.00 -31.43 350.95 -8.85 -40.29 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -7.34 Total: 3.84 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.27 Total: 3.54 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.23 Total: -51.46 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.27 Total: -17.84 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.43 -8.85 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035511682.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.232 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds