Wall clock time and date at job start Tue Mar 31 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47148 * 2 1 4 4 H 1.08994 * 115.55093 * 29.32875 * 3 2 1 5 5 C 1.53003 * 117.49500 * 243.62266 * 3 2 1 6 6 C 1.52998 * 117.49890 * 175.00108 * 3 2 1 7 7 H 1.08994 * 117.49956 * 359.97438 * 6 3 2 8 8 C 1.50700 * 117.49833 * 214.97552 * 6 3 2 9 9 O 1.21275 * 120.00026 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99864 * 179.97438 * 8 6 3 11 11 C 1.46501 * 119.99792 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.47133 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.50666 * 304.89795 * 12 11 10 14 14 C 1.52879 * 109.62388 * 184.90738 * 12 11 10 15 15 N 1.47145 * 108.60667 * 187.89709 * 14 12 11 16 16 C 1.36943 * 120.97857 * 230.50328 * 15 14 12 17 17 H 1.08005 * 119.99955 * 153.75675 * 16 15 14 18 18 C 1.38809 * 119.99986 * 333.74688 * 16 15 14 19 19 N 1.31616 * 120.00199 * 342.95019 * 18 16 15 20 20 Si 1.86806 * 120.00052 * 163.21783 * 18 16 15 21 21 H 1.48499 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47203 * 120.00203 * 20 18 16 23 23 H 1.48501 * 109.47169 * 240.00549 * 20 18 16 24 24 C 1.47149 * 118.04167 * 50.22357 * 15 14 12 25 25 C 1.53297 * 108.38173 * 309.72045 * 24 15 14 26 26 O 1.42960 * 109.22585 * 52.29891 * 25 24 15 27 27 H 1.08999 * 109.47382 * 60.00511 * 1 2 3 28 28 H 1.09006 * 109.46745 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47148 * 299.99950 * 1 2 3 30 30 H 1.09000 * 109.47148 * 240.00050 * 2 1 3 31 31 H 1.09003 * 109.47346 * 119.99993 * 2 1 3 32 32 H 1.09007 * 117.49718 * 145.02032 * 5 3 2 33 33 H 1.08999 * 117.49946 * 0.02562 * 5 3 2 34 34 H 0.96998 * 119.99989 * 0.02562 * 10 8 6 35 35 H 1.08996 * 109.47168 * 60.00238 * 11 10 8 36 36 H 1.09004 * 109.47156 * 300.00126 * 11 10 8 37 37 H 1.09005 * 109.61629 * 68.07523 * 14 12 11 38 38 H 1.08999 * 109.52104 * 307.65871 * 14 12 11 39 39 H 0.96998 * 120.00369 * 180.02562 * 19 18 16 40 40 H 1.08997 * 109.67874 * 69.44068 * 24 15 14 41 41 H 1.08997 * 109.68776 * 189.99723 * 24 15 14 42 42 H 1.09003 * 109.50910 * 172.22305 * 25 24 15 43 43 H 1.09003 * 109.51407 * 292.32469 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8439 1.9075 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1802 0.7720 0.1965 8 6 4.0228 2.8620 0.8913 9 8 3.2158 3.6165 1.3917 10 7 5.3424 3.1000 1.0275 11 6 5.8019 4.2703 1.7795 12 6 7.3315 4.3068 1.7815 13 1 7.7176 3.3642 2.1693 14 6 7.8164 5.4556 2.6660 15 7 9.2726 5.5909 2.5034 16 6 10.1016 5.6438 3.5921 17 1 11.1293 5.3234 3.5045 18 6 9.6211 6.1095 4.8083 19 7 8.5036 6.8036 4.8522 20 14 10.5643 5.7575 6.3818 21 1 11.7823 4.9701 6.0631 22 1 10.9571 7.0392 7.0207 23 1 9.7036 4.9839 7.3123 24 6 9.8124 5.6613 1.1363 25 6 9.2307 4.4971 0.3262 26 8 7.8062 4.5046 0.4476 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.7212 2.9427 -1.5345 33 1 3.0091 1.1859 -2.0160 34 1 5.9879 2.4963 0.6276 35 1 5.4383 4.2088 2.8051 36 1 5.4178 5.1767 1.3114 37 1 7.5819 5.2391 3.7083 38 1 7.3257 6.3806 2.3632 39 1 8.1680 7.1293 5.7020 40 1 9.5261 6.6074 0.6769 41 1 10.8990 5.5811 1.1659 42 1 9.5073 4.6090 -0.7221 43 1 9.6244 3.5552 0.7082 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035511683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:52 Heat of formation + Delta-G solvation = -67.513812 kcal Electronic energy + Delta-G solvation = -22288.225321 eV Core-core repulsion = 18947.630492 eV Total energy + Delta-G solvation = -3340.594828 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.14015 -40.11740 -38.07831 -36.45768 -35.83396 -33.28992 -33.01068 -32.39216 -29.17727 -27.66845 -25.32960 -24.91979 -24.47148 -23.10783 -21.75532 -21.36548 -20.83343 -18.94716 -18.33718 -17.54050 -17.17956 -16.92522 -16.18138 -16.02288 -15.85027 -15.52556 -15.31054 -15.20287 -15.04002 -14.60291 -14.52378 -13.84841 -13.51295 -13.32705 -13.19222 -13.03645 -12.96173 -12.72002 -12.52981 -12.21879 -12.15848 -12.07810 -11.91177 -11.89037 -11.34489 -11.23797 -11.05272 -10.88693 -10.72935 -10.57310 -10.16085 -8.78270 -7.93337 -5.40948 1.44682 1.46547 1.47568 1.57234 2.07609 2.46320 2.75986 2.87705 3.21485 3.46825 3.65178 3.78148 3.88642 4.01047 4.04432 4.20520 4.26032 4.30186 4.43793 4.50005 4.51247 4.56251 4.59232 4.66649 4.79283 4.80530 4.94208 4.97090 5.01274 5.04844 5.17517 5.20527 5.25125 5.31561 5.36408 5.49589 5.52205 5.58236 6.24290 6.30389 6.54016 7.03039 7.22103 7.72149 8.25726 9.12857 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.003286 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.148707 B = 8518.492282 C = 9181.901865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.123 4.123 4 H 0.090 0.910 5 C -0.134 4.134 6 C -0.193 4.193 7 H 0.152 0.848 8 C 0.533 3.467 9 O -0.593 6.593 10 N -0.705 5.705 11 C 0.143 3.857 12 C 0.078 3.922 13 H 0.066 0.934 14 C 0.159 3.841 15 N -0.615 5.615 16 C -0.265 4.265 17 H 0.076 0.924 18 C -0.053 4.053 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.289 1.289 24 C 0.101 3.899 25 C 0.057 3.943 26 O -0.390 6.390 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.416 0.584 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.066 0.934 38 H -0.002 1.002 39 H 0.251 0.749 40 H 0.015 0.985 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.464 -15.796 -13.107 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.142 4.142 4 H 0.108 0.892 5 C -0.171 4.171 6 C -0.214 4.214 7 H 0.170 0.830 8 C 0.321 3.679 9 O -0.474 6.474 10 N -0.356 5.356 11 C 0.018 3.982 12 C 0.019 3.981 13 H 0.084 0.916 14 C 0.032 3.968 15 N -0.339 5.339 16 C -0.394 4.394 17 H 0.093 0.907 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.221 1.221 23 H -0.216 1.216 24 C -0.024 4.024 25 C -0.021 4.021 26 O -0.309 6.309 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.154 0.846 34 H 0.253 0.747 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.016 0.984 39 H 0.060 0.940 40 H 0.033 0.967 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.161 -15.148 -12.774 21.831 hybrid contribution 0.928 0.583 1.382 1.764 sum -8.233 -14.566 -11.392 20.242 Atomic orbital electron populations 1.21752 0.95048 1.02277 1.01733 1.21160 0.96376 0.91988 1.03115 1.22500 0.90636 0.99603 1.01480 0.89215 1.23206 1.00317 1.03273 0.90337 1.22336 0.98449 0.97958 1.02622 0.83032 1.20420 0.81772 0.86249 0.79431 1.90672 1.55079 1.50794 1.50848 1.45767 1.07241 1.27805 1.54816 1.21060 0.91807 0.88892 0.96462 1.22643 0.92361 0.98888 0.84228 0.91610 1.20991 0.83899 0.93431 0.98453 1.44351 1.02479 1.85539 1.01563 1.19595 0.95132 1.35960 0.88747 0.90680 1.25867 0.99132 0.97738 1.02055 1.70195 1.24733 1.38088 1.25219 0.85156 0.78344 0.77196 0.79433 1.18660 1.22051 1.21582 1.21840 0.98467 0.96654 0.85465 1.23095 0.80067 0.97629 1.01291 1.87804 1.22475 1.93897 1.26766 0.92380 0.91319 0.93636 0.89659 0.91316 0.89717 0.84646 0.74715 0.91021 0.92563 0.91528 0.98413 0.93966 0.96720 0.90789 0.86028 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.87 71.98 0.71 -1.19 16 2 C -0.09 -1.16 6.22 30.59 0.19 -0.97 16 3 C -0.12 -2.31 5.25 -10.79 -0.06 -2.37 16 4 H 0.09 2.21 7.60 -2.39 -0.02 2.19 16 5 C -0.13 -2.19 9.88 30.60 0.30 -1.89 16 6 C -0.19 -3.79 5.91 -11.54 -0.07 -3.86 16 7 H 0.15 2.07 8.14 -2.39 -0.02 2.05 16 8 C 0.53 15.77 7.61 87.66 0.67 16.44 16 9 O -0.59 -23.08 16.26 -3.02 -0.05 -23.13 16 10 N -0.71 -19.97 5.50 -463.06 -2.55 -22.51 16 11 C 0.14 5.05 5.35 86.38 0.46 5.51 16 12 C 0.08 2.95 2.80 30.55 0.09 3.04 16 13 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 14 C 0.16 7.77 4.71 86.22 0.41 8.17 16 15 N -0.61 -30.84 3.05 -698.36 -2.13 -32.98 16 16 C -0.26 -14.34 9.65 84.03 0.81 -13.53 16 17 H 0.08 3.90 7.88 -2.91 -0.02 3.87 16 18 C -0.05 -2.91 4.94 84.86 0.42 -2.50 16 19 N -0.94 -55.69 11.15 21.65 0.24 -55.45 16 20 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 23 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 24 C 0.10 4.08 6.74 86.35 0.58 4.66 16 25 C 0.06 1.79 6.98 72.08 0.50 2.30 16 26 O -0.39 -13.80 10.33 -148.98 -1.54 -15.34 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.79 7.87 -2.39 -0.02 0.77 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.14 1.35 8.03 -2.39 -0.02 1.33 16 34 H 0.42 9.38 8.47 -92.71 -0.79 8.59 16 35 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 3.63 6.15 -2.38 -0.01 3.61 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 40 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 2.77 7.96 -2.39 -0.02 2.75 16 42 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -70.60 351.23 1.21 -69.38 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.20 Total: 19.83 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 5.01 Total: 13.82 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.44 Total: -110.94 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.59 Total: -38.47 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -70.60 1.21 -69.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035511683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.868 kcal (2) G-P(sol) polarization free energy of solvation -70.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds