Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 H 1.08995 * 110.53953 * 53.67738 * 3 2 1 5 5 C 1.54815 * 110.48841 * 291.06109 * 3 2 1 6 6 C 1.54993 * 102.09439 * 220.44639 * 5 3 2 7 7 O 1.44377 * 103.49279 * 37.02081 * 6 5 3 8 8 C 1.43751 * 106.97832 * 319.94166 * 7 6 5 9 9 H 1.08999 * 109.88120 * 266.94114 * 8 7 6 10 10 C 1.50698 * 109.87913 * 145.93429 * 8 7 6 11 11 O 1.21278 * 120.00021 * 340.63095 * 10 8 7 12 12 N 1.34780 * 119.99720 * 160.62966 * 10 8 7 13 13 C 1.46501 * 119.99757 * 184.68251 * 12 10 8 14 14 C 1.53002 * 109.46841 * 177.46838 * 13 12 10 15 15 H 1.09000 * 112.78079 * 288.62516 * 14 13 12 16 16 C 1.53496 * 113.46397 * 157.84050 * 14 13 12 17 17 C 1.53497 * 83.34190 * 219.14923 * 16 14 13 18 18 N 1.47067 * 113.46602 * 59.40692 * 14 13 12 19 19 C 1.36931 * 136.06112 * 321.93362 * 18 14 13 20 20 H 1.08004 * 119.99810 * 343.02157 * 19 18 14 21 21 C 1.38815 * 120.00279 * 163.02353 * 19 18 14 22 22 N 1.31624 * 119.99711 * 357.16512 * 21 19 18 23 23 Si 1.86797 * 120.00003 * 177.17009 * 21 19 18 24 24 H 1.48497 * 109.47487 * 94.65362 * 23 21 19 25 25 H 1.48508 * 109.46783 * 214.65292 * 23 21 19 26 26 H 1.48498 * 109.47327 * 334.64763 * 23 21 19 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46984 * 299.99671 * 1 2 3 29 29 H 1.08998 * 109.47320 * 60.00364 * 1 2 3 30 30 H 1.09007 * 109.47057 * 239.99899 * 2 1 3 31 31 H 1.09003 * 109.47418 * 120.00111 * 2 1 3 32 32 H 1.09001 * 110.90685 * 102.24335 * 5 3 2 33 33 H 1.09005 * 110.93476 * 338.65227 * 5 3 2 34 34 H 1.09007 * 110.61654 * 278.52198 * 6 5 3 35 35 H 1.08997 * 110.62447 * 155.52746 * 6 5 3 36 36 H 0.96997 * 119.99718 * 4.67861 * 12 10 8 37 37 H 1.08998 * 109.46767 * 57.46635 * 13 12 10 38 38 H 1.08998 * 109.46957 * 297.46822 * 13 12 10 39 39 H 1.08999 * 114.20911 * 332.73994 * 16 14 13 40 40 H 1.09004 * 114.20178 * 105.56799 * 16 14 13 41 41 H 1.08995 * 113.46996 * 271.29012 * 17 16 14 42 42 H 1.09001 * 113.51626 * 140.85688 * 17 16 14 43 43 H 0.97003 * 119.99682 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 2.0045 0.8223 5 6 1.7292 2.1271 -1.3533 6 6 3.0260 2.9351 -1.6138 7 8 4.0686 2.0675 -1.1190 8 6 3.5779 1.4708 0.0933 9 1 3.8885 2.0664 0.9517 10 6 4.1093 0.0667 0.2248 11 8 4.5314 -0.5159 -0.7515 12 7 4.1154 -0.5416 1.4275 13 6 4.7249 -1.8655 1.5757 14 6 4.6544 -2.2982 3.0416 15 1 5.3337 -1.7346 3.6811 16 6 4.7513 -3.8177 3.2356 17 6 3.6906 -3.5676 4.3165 18 7 3.2821 -2.3711 3.5653 19 6 2.1306 -1.6449 3.4179 20 1 2.1710 -0.6449 3.0118 21 6 0.9112 -2.1940 3.7903 22 7 0.8548 -3.4323 4.2328 23 14 -0.6495 -1.1755 3.6633 24 1 -1.3159 -1.4505 2.3651 25 1 -1.5659 -1.5333 4.7758 26 1 -0.3075 0.2671 3.7484 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.8687 2.7903 -1.2652 33 1 1.5686 1.3863 -2.1367 34 1 3.0117 3.8732 -1.0589 35 1 3.1550 3.1207 -2.6801 36 1 3.7162 -0.1027 2.1950 37 1 5.7670 -1.8231 1.2590 38 1 4.1865 -2.5845 0.9583 39 1 4.3951 -4.4004 2.3861 40 1 5.7118 -4.1584 3.6224 41 1 4.1132 -3.3422 5.2956 42 1 2.9209 -4.3383 4.3571 43 1 0.0028 -3.8159 4.4934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038361469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -27.837928 kcal Electronic energy + Delta-G solvation = -24054.786486 eV Core-core repulsion = 20715.912133 eV Total energy + Delta-G solvation = -3338.874353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.43336 -38.61664 -37.63732 -34.66634 -33.76020 -32.32147 -30.35661 -29.59091 -28.13653 -27.15980 -23.69856 -23.53248 -22.83407 -21.85145 -20.91713 -19.57756 -19.15952 -17.24122 -16.74257 -16.43048 -15.96826 -15.34006 -14.88359 -14.61707 -14.34916 -14.24050 -14.02643 -13.55199 -13.27687 -12.98604 -12.92749 -12.40944 -12.16121 -11.81577 -11.58926 -11.53762 -11.23025 -11.15933 -11.02219 -10.89519 -10.76272 -10.64355 -10.52932 -10.36307 -10.03619 -9.94781 -9.79492 -9.41942 -9.05185 -8.80557 -8.41935 -6.87137 -5.84563 -3.23738 2.96002 3.29254 3.31727 3.36080 3.37345 4.16916 4.34531 4.47147 4.72181 4.83642 5.05161 5.14183 5.24300 5.32094 5.35438 5.43288 5.53902 5.58205 5.61396 5.65218 5.71542 5.74357 5.88593 5.92232 5.96808 6.13064 6.14027 6.34674 6.39377 6.40807 6.51424 6.60643 6.65664 6.72385 6.78897 6.98081 7.17191 7.41175 7.53154 7.94232 8.02397 8.67343 8.90841 9.61079 10.58983 11.29643 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.007386 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.464607 B = 3790.060507 C = 5232.014873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.109 4.109 4 H 0.091 0.909 5 C -0.148 4.148 6 C 0.045 3.955 7 O -0.351 6.351 8 C 0.062 3.938 9 H 0.087 0.913 10 C 0.518 3.482 11 O -0.537 6.537 12 N -0.710 5.710 13 C 0.125 3.875 14 C 0.125 3.875 15 H 0.050 0.950 16 C -0.155 4.155 17 C 0.133 3.867 18 N -0.599 5.599 19 C -0.216 4.216 20 H 0.074 0.926 21 C 0.003 3.997 22 N -0.907 5.907 23 Si 0.898 3.102 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.279 1.279 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.405 0.595 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.084 0.916 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 9.231 -6.021 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.128 4.128 4 H 0.109 0.891 5 C -0.185 4.185 6 C -0.032 4.032 7 O -0.269 6.269 8 C 0.000 4.000 9 H 0.104 0.896 10 C 0.303 3.697 11 O -0.414 6.414 12 N -0.364 5.364 13 C 0.001 3.999 14 C 0.017 3.983 15 H 0.067 0.933 16 C -0.194 4.194 17 C 0.007 3.993 18 N -0.325 5.325 19 C -0.343 4.343 20 H 0.091 0.909 21 C -0.195 4.195 22 N -0.553 5.553 23 Si 0.728 3.272 24 H -0.208 1.208 25 H -0.218 1.218 26 H -0.204 1.204 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.242 0.758 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.102 0.898 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.010 8.834 -6.782 11.536 hybrid contribution -1.323 0.856 0.605 1.688 sum 1.686 9.690 -6.177 11.614 Atomic orbital electron populations 1.21740 0.95483 1.02161 1.00883 1.21913 0.96578 0.94198 1.04632 1.22553 0.92665 0.98890 0.98692 0.89053 1.23236 0.98228 0.99681 0.97376 1.23595 0.86448 0.93082 1.00052 1.88953 1.38187 1.60541 1.39170 1.22760 0.94465 0.92996 0.89755 0.89573 1.20152 0.78528 0.87513 0.83540 1.90661 1.47128 1.66151 1.37417 1.46028 1.59604 1.20063 1.10691 1.21723 0.96494 0.83440 0.98289 1.22512 0.89478 0.94875 0.91430 0.93292 1.23596 0.99053 0.95418 1.01368 1.22268 0.93784 0.91536 0.91673 1.45447 1.03954 1.32813 1.50325 1.18641 0.82291 0.95082 1.38325 0.90901 1.24866 0.97141 0.95950 1.01570 1.69795 1.24470 1.13009 1.47988 0.86368 0.83811 0.79365 0.77690 1.20774 1.21844 1.20407 0.92237 0.92953 0.93329 0.91445 0.88672 0.90072 0.90050 0.92121 0.88838 0.75763 0.92556 0.91516 0.90160 0.92568 0.96230 0.89817 0.93599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.78 37.15 0.36 -1.91 16 2 C -0.14 -2.25 4.15 -26.74 -0.11 -2.36 16 3 C -0.11 -1.51 3.05 -89.09 -0.27 -1.78 16 4 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 5 C -0.15 -1.71 5.96 -24.72 -0.15 -1.86 16 6 C 0.04 0.51 7.72 38.21 0.29 0.81 16 7 O -0.35 -5.59 10.81 -53.98 -0.58 -6.17 16 8 C 0.06 0.94 3.84 -27.31 -0.10 0.84 16 9 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 10 C 0.52 9.53 5.01 -10.98 -0.06 9.47 16 11 O -0.54 -11.77 16.54 -13.19 -0.22 -11.99 16 12 N -0.71 -12.72 3.87 -60.29 -0.23 -12.96 16 13 C 0.13 2.31 5.70 -4.04 -0.02 2.29 16 14 C 0.12 2.37 4.19 -72.40 -0.30 2.06 16 15 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.16 -2.83 8.02 -26.22 -0.21 -3.04 16 17 C 0.13 2.95 7.85 -8.51 -0.07 2.88 16 18 N -0.60 -13.97 3.60 -177.01 -0.64 -14.60 16 19 C -0.22 -5.39 9.48 -15.06 -0.14 -5.54 16 20 H 0.07 1.70 5.18 -52.48 -0.27 1.43 16 21 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 22 N -0.91 -25.60 11.43 55.49 0.63 -24.97 16 23 Si 0.90 20.64 29.36 -169.99 -4.99 15.65 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.82 7.95 -51.93 -0.41 0.41 16 29 H 0.05 0.63 7.58 -51.93 -0.39 0.24 16 30 H 0.07 1.21 7.60 -51.93 -0.39 0.82 16 31 H 0.09 1.82 5.13 -51.93 -0.27 1.55 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.01 7.79 -51.93 -0.40 0.60 16 34 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.41 7.12 6.16 -40.82 -0.25 6.87 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.38 7.96 -51.93 -0.41 0.96 16 39 H 0.08 1.50 8.00 -51.93 -0.42 1.09 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 2.11 6.60 -51.93 -0.34 1.76 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -30.70 336.84 -8.76 -39.46 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -6.93 Total: 8.66 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -0.87 Total: 1.85 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.24 Total: -52.53 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.80 Total: -18.17 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.99 Total: 15.65 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.70 -8.76 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038361469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.618 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds