Wall clock time and date at job start Tue Mar 31 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47228 * 2 1 4 4 H 1.08995 * 110.53953 * 53.67738 * 3 2 1 5 5 C 1.54815 * 110.48841 * 291.06109 * 3 2 1 6 6 C 1.54993 * 102.09439 * 220.44639 * 5 3 2 7 7 O 1.44377 * 103.49279 * 37.02081 * 6 5 3 8 8 C 1.43751 * 106.97832 * 319.94166 * 7 6 5 9 9 H 1.08999 * 109.88120 * 266.94114 * 8 7 6 10 10 C 1.50698 * 109.87913 * 145.93429 * 8 7 6 11 11 O 1.21278 * 120.00021 * 340.63095 * 10 8 7 12 12 N 1.34780 * 119.99720 * 160.62966 * 10 8 7 13 13 C 1.46501 * 119.99757 * 184.68251 * 12 10 8 14 14 C 1.53002 * 109.46841 * 177.46838 * 13 12 10 15 15 H 1.09000 * 112.78079 * 288.62516 * 14 13 12 16 16 C 1.53496 * 113.46397 * 157.84050 * 14 13 12 17 17 C 1.53497 * 83.34190 * 219.14923 * 16 14 13 18 18 N 1.47067 * 113.46602 * 59.40692 * 14 13 12 19 19 C 1.36931 * 136.06112 * 321.93362 * 18 14 13 20 20 H 1.08004 * 119.99810 * 343.02157 * 19 18 14 21 21 C 1.38815 * 120.00279 * 163.02353 * 19 18 14 22 22 N 1.31624 * 119.99711 * 357.16512 * 21 19 18 23 23 Si 1.86797 * 120.00003 * 177.17009 * 21 19 18 24 24 H 1.48497 * 109.47487 * 94.65362 * 23 21 19 25 25 H 1.48508 * 109.46783 * 214.65292 * 23 21 19 26 26 H 1.48498 * 109.47327 * 334.64763 * 23 21 19 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46984 * 299.99671 * 1 2 3 29 29 H 1.08998 * 109.47320 * 60.00364 * 1 2 3 30 30 H 1.09007 * 109.47057 * 239.99899 * 2 1 3 31 31 H 1.09003 * 109.47418 * 120.00111 * 2 1 3 32 32 H 1.09001 * 110.90685 * 102.24335 * 5 3 2 33 33 H 1.09005 * 110.93476 * 338.65227 * 5 3 2 34 34 H 1.09007 * 110.61654 * 278.52198 * 6 5 3 35 35 H 1.08997 * 110.62447 * 155.52746 * 6 5 3 36 36 H 0.96997 * 119.99718 * 4.67861 * 12 10 8 37 37 H 1.08998 * 109.46767 * 57.46635 * 13 12 10 38 38 H 1.08998 * 109.46957 * 297.46822 * 13 12 10 39 39 H 1.08999 * 114.20911 * 332.73994 * 16 14 13 40 40 H 1.09004 * 114.20178 * 105.56799 * 16 14 13 41 41 H 1.08995 * 113.46996 * 271.29012 * 17 16 14 42 42 H 1.09001 * 113.51626 * 140.85688 * 17 16 14 43 43 H 0.97003 * 119.99682 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5974 2.0045 0.8223 5 6 1.7292 2.1271 -1.3533 6 6 3.0260 2.9351 -1.6138 7 8 4.0686 2.0675 -1.1190 8 6 3.5779 1.4708 0.0933 9 1 3.8885 2.0664 0.9517 10 6 4.1093 0.0667 0.2248 11 8 4.5314 -0.5159 -0.7515 12 7 4.1154 -0.5416 1.4275 13 6 4.7249 -1.8655 1.5757 14 6 4.6544 -2.2982 3.0416 15 1 5.3337 -1.7346 3.6811 16 6 4.7513 -3.8177 3.2356 17 6 3.6906 -3.5676 4.3165 18 7 3.2821 -2.3711 3.5653 19 6 2.1306 -1.6449 3.4179 20 1 2.1710 -0.6449 3.0118 21 6 0.9112 -2.1940 3.7903 22 7 0.8548 -3.4323 4.2328 23 14 -0.6495 -1.1755 3.6633 24 1 -1.3159 -1.4505 2.3651 25 1 -1.5659 -1.5333 4.7758 26 1 -0.3075 0.2671 3.7484 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.8687 2.7903 -1.2652 33 1 1.5686 1.3863 -2.1367 34 1 3.0117 3.8732 -1.0589 35 1 3.1550 3.1207 -2.6801 36 1 3.7162 -0.1027 2.1950 37 1 5.7670 -1.8231 1.2590 38 1 4.1865 -2.5845 0.9583 39 1 4.3951 -4.4004 2.3861 40 1 5.7118 -4.1584 3.6224 41 1 4.1132 -3.3422 5.2956 42 1 2.9209 -4.3383 4.3571 43 1 0.0028 -3.8159 4.4934 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038361469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:17 Heat of formation + Delta-G solvation = -47.342853 kcal Electronic energy + Delta-G solvation = -24055.632283 eV Core-core repulsion = 20715.912133 eV Total energy + Delta-G solvation = -3339.720150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.69515 -40.12656 -39.09475 -35.93433 -35.23846 -34.23235 -31.40114 -30.87735 -29.96505 -28.62154 -25.36896 -24.95162 -24.01186 -23.22751 -22.21026 -21.07712 -20.71447 -18.82818 -18.07338 -17.71499 -17.28766 -17.01549 -16.33649 -15.88758 -15.79220 -15.66143 -15.44049 -15.09904 -14.64364 -14.48589 -14.29583 -13.76808 -13.64179 -13.33188 -13.06492 -12.88669 -12.70581 -12.61968 -12.50131 -12.30775 -12.20643 -12.11181 -11.82347 -11.68064 -11.66134 -11.46726 -11.21916 -10.97788 -10.71831 -10.41977 -9.94133 -8.76828 -7.82594 -5.21355 1.45542 1.47398 1.54543 1.57481 2.02460 2.48930 3.07267 3.35909 3.38950 3.47819 3.63919 3.72664 3.95953 4.01091 4.15446 4.17806 4.28796 4.32574 4.35659 4.41583 4.48588 4.63355 4.68561 4.71987 4.78572 4.85385 4.90692 4.95545 5.06237 5.08754 5.11378 5.16073 5.23379 5.30628 5.40506 5.45824 5.63085 5.79079 5.80616 6.05700 6.58376 6.93088 7.24842 7.67136 8.69801 9.32324 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.007386 C = 0.005350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.464607 B = 3790.060507 C = 5232.014873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C -0.107 4.107 4 H 0.116 0.884 5 C -0.142 4.142 6 C 0.041 3.959 7 O -0.381 6.381 8 C 0.064 3.936 9 H 0.114 0.886 10 C 0.514 3.486 11 O -0.580 6.580 12 N -0.706 5.706 13 C 0.131 3.869 14 C 0.132 3.868 15 H 0.074 0.926 16 C -0.134 4.134 17 C 0.124 3.876 18 N -0.625 5.625 19 C -0.202 4.202 20 H 0.090 0.910 21 C -0.061 4.061 22 N -0.948 5.948 23 Si 0.948 3.052 24 H -0.281 1.281 25 H -0.308 1.308 26 H -0.253 1.253 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.408 0.592 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.028 0.972 42 H 0.047 0.953 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.369 12.147 -6.397 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C -0.126 4.126 4 H 0.134 0.866 5 C -0.180 4.180 6 C -0.035 4.035 7 O -0.300 6.300 8 C 0.003 3.997 9 H 0.131 0.869 10 C 0.301 3.699 11 O -0.459 6.459 12 N -0.359 5.359 13 C 0.006 3.994 14 C 0.026 3.974 15 H 0.092 0.908 16 C -0.173 4.173 17 C -0.002 4.002 18 N -0.351 5.351 19 C -0.331 4.331 20 H 0.107 0.893 21 C -0.254 4.254 22 N -0.596 5.596 23 Si 0.777 3.223 24 H -0.207 1.207 25 H -0.236 1.236 26 H -0.177 1.177 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.131 0.869 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.125 0.875 36 H 0.246 0.754 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.556 11.791 -7.161 14.246 hybrid contribution -1.394 -0.074 0.688 1.557 sum 2.162 11.717 -6.473 13.559 Atomic orbital electron populations 1.21716 0.94649 1.01176 1.02422 1.21779 0.97269 0.95868 1.01918 1.22602 0.91643 0.97221 1.01095 0.86634 1.23243 0.99649 0.99713 0.95383 1.23886 0.84992 0.93288 1.01311 1.88927 1.40103 1.61459 1.39513 1.22839 0.95150 0.90946 0.90784 0.86856 1.20839 0.77518 0.88780 0.82726 1.90634 1.49129 1.67512 1.38672 1.45992 1.59308 1.19682 1.10887 1.21575 0.97028 0.83332 0.97447 1.22627 0.87421 0.95703 0.91645 0.90831 1.23429 0.99499 0.94983 0.99357 1.22283 0.94151 0.90497 0.93237 1.45783 1.05248 1.32940 1.51143 1.19094 0.82849 0.95601 1.35533 0.89284 1.25602 1.00047 0.96957 1.02834 1.69999 1.24188 1.14832 1.50620 0.85535 0.80411 0.79523 0.76822 1.20720 1.23563 1.17691 0.94545 0.92577 0.90515 0.93962 0.91594 0.86885 0.91406 0.89332 0.87518 0.75406 0.90863 0.94398 0.91167 0.88517 0.95471 0.93496 0.94765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.78 71.98 0.70 -3.51 16 2 C -0.13 -4.21 4.15 30.59 0.13 -4.08 16 3 C -0.11 -2.65 3.05 -9.80 -0.03 -2.68 16 4 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 5 C -0.14 -2.81 5.96 31.90 0.19 -2.62 16 6 C 0.04 0.79 7.72 72.66 0.56 1.35 16 7 O -0.38 -11.31 10.81 -131.05 -1.42 -12.72 16 8 C 0.06 1.80 3.84 30.22 0.12 1.92 16 9 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 10 C 0.51 18.53 5.01 87.66 0.44 18.97 16 11 O -0.58 -25.63 16.54 14.91 0.25 -25.39 16 12 N -0.71 -24.57 3.87 -463.06 -1.79 -26.36 16 13 C 0.13 4.75 5.70 86.38 0.49 5.24 16 14 C 0.13 4.81 4.19 41.79 0.18 4.99 16 15 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 16 C -0.13 -4.71 8.02 30.93 0.25 -4.46 16 17 C 0.12 5.52 7.85 83.17 0.65 6.17 16 18 N -0.62 -28.95 3.60 -713.95 -2.57 -31.52 16 19 C -0.20 -10.08 9.48 84.04 0.80 -9.28 16 20 H 0.09 4.03 5.18 -2.91 -0.02 4.02 16 21 C -0.06 -3.26 5.50 84.86 0.47 -2.80 16 22 N -0.95 -55.48 11.43 21.65 0.25 -55.23 16 23 Si 0.95 42.56 29.36 68.60 2.01 44.57 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 25 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 26 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.61 7.95 -2.39 -0.02 1.59 16 29 H 0.08 1.80 7.58 -2.39 -0.02 1.79 16 30 H 0.04 1.54 7.60 -2.38 -0.02 1.52 16 31 H 0.07 2.50 5.13 -2.39 -0.01 2.49 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.07 1.53 7.79 -2.38 -0.02 1.51 16 34 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.41 13.66 6.16 -92.71 -0.57 13.09 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.04 1.59 7.96 -2.39 -0.02 1.57 16 39 H 0.07 2.61 8.00 -2.39 -0.02 2.59 16 40 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 2.45 6.60 -2.39 -0.02 2.43 16 43 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -69.42 336.84 2.10 -67.32 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.43 Total: 30.12 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.94 Total: 9.22 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.11 Total: -113.11 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.17 Total: -38.11 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.01 Total: 44.57 kcal Total: -69.42 2.10 -67.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038361469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.973 kcal (2) G-P(sol) polarization free energy of solvation -69.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds