Wall clock time and date at job start Tue Mar 31 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47135 * 2 1 4 4 H 1.08995 * 109.82259 * 54.43243 * 3 2 1 5 5 O 1.43235 * 109.82747 * 293.54268 * 3 2 1 6 6 C 1.43645 * 109.97529 * 242.10684 * 5 3 2 7 7 C 1.54944 * 105.22260 * 335.52671 * 6 5 3 8 8 C 1.54383 * 109.90564 * 175.36972 * 3 2 1 9 9 H 1.09000 * 110.84920 * 22.71783 * 8 3 2 10 10 C 1.50703 * 110.84793 * 259.10125 * 8 3 2 11 11 O 1.21287 * 119.99508 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00181 * 179.97438 * 10 8 3 13 13 C 1.46503 * 119.99675 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46651 * 180.02562 * 13 12 10 15 15 H 1.08996 * 112.96738 * 306.67609 * 14 13 12 16 16 C 1.53950 * 113.76698 * 174.99902 * 14 13 12 17 17 C 1.53945 * 86.28999 * 222.09194 * 16 14 13 18 18 N 1.47582 * 113.76855 * 78.50410 * 14 13 12 19 19 C 1.36932 * 134.49373 * 318.94045 * 18 14 13 20 20 H 1.07997 * 120.00450 * 0.02562 * 19 18 14 21 21 C 1.38816 * 119.99814 * 179.97438 * 19 18 14 22 22 N 1.31617 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47257 * 59.99826 * 23 21 19 25 25 H 1.48494 * 109.46936 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46637 * 299.99785 * 23 21 19 27 27 H 1.08998 * 109.47387 * 60.00257 * 1 2 3 28 28 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47121 * 300.00184 * 1 2 3 30 30 H 1.08996 * 109.47150 * 239.99982 * 2 1 3 31 31 H 1.08998 * 109.47387 * 119.99743 * 2 1 3 32 32 H 1.09002 * 110.30923 * 94.49115 * 6 5 3 33 33 H 1.09000 * 110.31166 * 216.56243 * 6 5 3 34 34 H 1.08997 * 111.13230 * 154.41072 * 7 6 5 35 35 H 1.09003 * 111.12649 * 278.57419 * 7 6 5 36 36 H 0.96995 * 119.99831 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.47248 * 299.99684 * 13 12 10 38 38 H 1.09001 * 109.47271 * 60.00049 * 13 12 10 39 39 H 1.08997 * 113.73903 * 336.43562 * 16 14 13 40 40 H 1.09000 * 113.74100 * 107.63520 * 16 14 13 41 41 H 1.08999 * 113.76764 * 137.90506 * 17 16 14 42 42 H 1.08997 * 113.76865 * 269.19368 * 17 16 14 43 43 H 0.96994 * 120.00337 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9898 0.8341 5 8 1.6945 2.0800 -1.2353 6 6 2.8861 2.4654 -1.9387 7 6 3.9743 2.6122 -0.8455 8 6 3.5793 1.4558 0.1172 9 1 4.0022 0.5093 -0.2197 10 6 4.0070 1.7638 1.5290 11 8 3.1720 1.9594 2.3866 12 7 5.3175 1.8209 1.8389 13 6 5.7332 2.1198 3.2115 14 6 7.2611 2.1252 3.2918 15 1 7.7107 1.2117 2.9026 16 6 7.8087 2.5493 4.6667 17 6 8.8513 3.3704 3.8867 18 7 7.8795 3.3619 2.7759 19 6 7.6456 4.1749 1.6992 20 1 6.8467 3.9427 1.0106 21 6 8.4347 5.2983 1.4934 22 7 9.4073 5.5823 2.3334 23 14 8.1151 6.4079 0.0249 24 1 6.7345 6.9489 0.1045 25 1 9.0872 7.5304 0.0319 26 1 8.2692 5.6266 -1.2285 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1699 1.6931 -2.6537 33 1 2.7330 3.4157 -2.4501 34 1 4.9707 2.4579 -1.2596 35 1 3.9033 3.5794 -0.3479 36 1 5.9852 1.6642 1.1531 37 1 5.3511 3.0984 3.5020 38 1 5.3362 1.3602 3.8850 39 1 7.1150 3.1581 5.2465 40 1 8.2355 1.7274 5.2416 41 1 9.0324 4.3608 4.3043 42 1 9.7701 2.8244 3.6730 43 1 9.9589 6.3670 2.1894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038528927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:19 Heat of formation + Delta-G solvation = -41.815615 kcal Electronic energy + Delta-G solvation = -23060.709237 eV Core-core repulsion = 19721.228767 eV Total energy + Delta-G solvation = -3339.480471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40593 -38.67547 -37.78021 -34.20214 -33.51956 -32.44809 -32.12570 -28.66969 -28.01796 -27.55363 -24.08783 -23.40857 -22.78966 -21.82322 -20.79435 -20.00205 -19.09951 -17.71486 -16.73735 -16.45643 -15.64119 -15.50533 -15.21179 -14.70062 -14.46223 -14.18285 -14.07322 -13.65811 -13.23122 -13.18649 -13.06053 -12.84798 -12.20410 -11.89930 -11.83814 -11.47187 -11.42356 -11.16004 -11.08510 -11.04215 -10.87053 -10.80887 -10.77350 -10.59746 -10.06915 -9.81182 -9.71689 -9.48906 -9.33925 -8.83949 -8.65097 -6.94035 -5.80583 -3.13308 2.81652 3.33467 3.37480 3.40467 3.40747 3.75009 4.37456 4.39397 4.58607 4.72867 5.00930 5.05324 5.07568 5.10986 5.21173 5.32240 5.35296 5.38741 5.57988 5.63276 5.66327 5.72882 5.77702 5.84898 5.87321 5.91098 5.97659 6.04401 6.20491 6.25743 6.27402 6.36840 6.58134 6.66486 6.82843 6.97180 7.20288 7.36799 7.54853 7.80522 7.94021 8.46064 8.99586 9.66764 10.55230 11.36069 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.005024 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.110478 B = 5571.414454 C = 6900.394334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.094 3.906 4 H 0.101 0.899 5 O -0.376 6.376 6 C 0.053 3.947 7 C -0.147 4.147 8 C -0.143 4.143 9 H 0.108 0.892 10 C 0.522 3.478 11 O -0.547 6.547 12 N -0.710 5.710 13 C 0.123 3.877 14 C 0.126 3.874 15 H 0.049 0.951 16 C -0.156 4.156 17 C 0.159 3.841 18 N -0.602 5.602 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.026 0.974 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 -10.863 -4.390 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.036 3.964 4 H 0.119 0.881 5 O -0.296 6.296 6 C -0.024 4.024 7 C -0.185 4.185 8 C -0.164 4.164 9 H 0.126 0.874 10 C 0.307 3.693 11 O -0.425 6.425 12 N -0.359 5.359 13 C -0.002 4.002 14 C 0.018 3.982 15 H 0.066 0.934 16 C -0.195 4.195 17 C 0.034 3.966 18 N -0.328 5.328 19 C -0.348 4.348 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.736 3.264 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.212 1.212 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.575 -10.387 -4.031 15.362 hybrid contribution 0.712 0.485 -1.210 1.485 sum -9.864 -9.902 -5.241 14.927 Atomic orbital electron populations 1.21674 0.95180 1.01179 1.02344 1.21867 0.97148 0.95653 1.02102 1.22716 0.91656 0.94194 0.87843 0.88090 1.88422 1.29531 1.78328 1.33305 1.23347 0.84389 1.00289 0.94353 1.23328 1.00517 0.98746 0.95883 1.22939 0.97910 1.01270 0.94317 0.87426 1.20059 0.82845 0.77002 0.89412 1.90670 1.51507 1.50361 1.49966 1.45946 1.06595 1.70620 1.12757 1.21783 0.95887 1.00879 0.81640 1.22504 0.90608 0.91615 0.93478 0.93360 1.23772 1.00509 0.99735 0.95457 1.22194 0.90680 0.98196 0.85563 1.46059 1.35027 1.22956 1.28788 1.18868 1.12549 1.02278 1.01114 0.90482 1.24755 0.97976 0.98597 0.98934 1.69798 1.21417 1.28158 1.37226 0.86299 0.77434 0.80433 0.82199 1.21114 1.21532 1.21227 0.92142 0.93058 0.92647 0.91806 0.91016 0.92112 0.89469 0.88834 0.89423 0.76309 0.90938 0.92158 0.90513 0.92805 0.90822 0.95584 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.82 37.15 0.36 -1.17 16 2 C -0.13 -1.45 5.51 -26.73 -0.15 -1.60 16 3 C 0.09 1.24 2.97 -26.00 -0.08 1.16 16 4 H 0.10 1.58 6.78 -51.93 -0.35 1.22 16 5 O -0.38 -5.08 10.63 -35.23 -0.37 -5.46 16 6 C 0.05 0.59 7.77 38.18 0.30 0.88 16 7 C -0.15 -1.79 6.62 -24.34 -0.16 -1.95 16 8 C -0.14 -1.81 2.92 -89.68 -0.26 -2.07 16 9 H 0.11 1.12 7.85 -51.93 -0.41 0.71 16 10 C 0.52 8.36 7.14 -10.98 -0.08 8.28 16 11 O -0.55 -10.54 15.42 5.55 0.09 -10.45 16 12 N -0.71 -11.37 5.53 -60.29 -0.33 -11.71 16 13 C 0.12 2.15 5.54 -4.04 -0.02 2.13 16 14 C 0.13 2.34 4.33 -66.86 -0.29 2.05 16 15 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.16 -2.78 7.86 -25.80 -0.20 -2.98 16 17 C 0.16 3.57 7.52 -2.97 -0.02 3.55 16 18 N -0.60 -14.27 3.57 -170.72 -0.61 -14.88 16 19 C -0.22 -5.75 10.51 -15.06 -0.16 -5.91 16 20 H 0.08 1.90 7.80 -52.49 -0.41 1.49 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.52 11.38 55.49 0.63 -25.89 16 23 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H 0.06 0.65 7.88 -51.93 -0.41 0.25 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.25 8.04 -51.93 -0.42 0.83 16 36 H 0.40 6.03 8.47 -40.82 -0.35 5.69 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.85 7.15 -51.93 -0.37 1.48 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 349.52 15.07 5.27 5.27 Total: -1.00 -31.00 349.52 -8.56 -39.56 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.34 Total: 4.97 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -0.86 Total: 2.11 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: -0.31 Total: -52.47 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.29 Total: -15.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.00 -8.56 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038528927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.256 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds