Wall clock time and date at job start Tue Mar 31 2020 05:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47135 * 2 1 4 4 H 1.08995 * 109.82259 * 54.43243 * 3 2 1 5 5 O 1.43235 * 109.82747 * 293.54268 * 3 2 1 6 6 C 1.43645 * 109.97529 * 242.10684 * 5 3 2 7 7 C 1.54944 * 105.22260 * 335.52671 * 6 5 3 8 8 C 1.54383 * 109.90564 * 175.36972 * 3 2 1 9 9 H 1.09000 * 110.84920 * 22.71783 * 8 3 2 10 10 C 1.50703 * 110.84793 * 259.10125 * 8 3 2 11 11 O 1.21287 * 119.99508 * 0.02562 * 10 8 3 12 12 N 1.34777 * 120.00181 * 179.97438 * 10 8 3 13 13 C 1.46503 * 119.99675 * 180.02562 * 12 10 8 14 14 C 1.53003 * 109.46651 * 180.02562 * 13 12 10 15 15 H 1.08996 * 112.96738 * 306.67609 * 14 13 12 16 16 C 1.53950 * 113.76698 * 174.99902 * 14 13 12 17 17 C 1.53945 * 86.28999 * 222.09194 * 16 14 13 18 18 N 1.47582 * 113.76855 * 78.50410 * 14 13 12 19 19 C 1.36932 * 134.49373 * 318.94045 * 18 14 13 20 20 H 1.07997 * 120.00450 * 0.02562 * 19 18 14 21 21 C 1.38816 * 119.99814 * 179.97438 * 19 18 14 22 22 N 1.31617 * 120.00319 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99862 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47257 * 59.99826 * 23 21 19 25 25 H 1.48494 * 109.46936 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.46637 * 299.99785 * 23 21 19 27 27 H 1.08998 * 109.47387 * 60.00257 * 1 2 3 28 28 H 1.08997 * 109.47456 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47121 * 300.00184 * 1 2 3 30 30 H 1.08996 * 109.47150 * 239.99982 * 2 1 3 31 31 H 1.08998 * 109.47387 * 119.99743 * 2 1 3 32 32 H 1.09002 * 110.30923 * 94.49115 * 6 5 3 33 33 H 1.09000 * 110.31166 * 216.56243 * 6 5 3 34 34 H 1.08997 * 111.13230 * 154.41072 * 7 6 5 35 35 H 1.09003 * 111.12649 * 278.57419 * 7 6 5 36 36 H 0.96995 * 119.99831 * 0.02562 * 12 10 8 37 37 H 1.08994 * 109.47248 * 299.99684 * 13 12 10 38 38 H 1.09001 * 109.47271 * 60.00049 * 13 12 10 39 39 H 1.08997 * 113.73903 * 336.43562 * 16 14 13 40 40 H 1.09000 * 113.74100 * 107.63520 * 16 14 13 41 41 H 1.08999 * 113.76764 * 137.90506 * 17 16 14 42 42 H 1.08997 * 113.76865 * 269.19368 * 17 16 14 43 43 H 0.96994 * 120.00337 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6008 1.9898 0.8341 5 8 1.6945 2.0800 -1.2353 6 6 2.8861 2.4654 -1.9387 7 6 3.9743 2.6122 -0.8455 8 6 3.5793 1.4558 0.1172 9 1 4.0022 0.5093 -0.2197 10 6 4.0070 1.7638 1.5290 11 8 3.1720 1.9594 2.3866 12 7 5.3175 1.8209 1.8389 13 6 5.7332 2.1198 3.2115 14 6 7.2611 2.1252 3.2918 15 1 7.7107 1.2117 2.9026 16 6 7.8087 2.5493 4.6667 17 6 8.8513 3.3704 3.8867 18 7 7.8795 3.3619 2.7759 19 6 7.6456 4.1749 1.6992 20 1 6.8467 3.9427 1.0106 21 6 8.4347 5.2983 1.4934 22 7 9.4073 5.5823 2.3334 23 14 8.1151 6.4079 0.0249 24 1 6.7345 6.9489 0.1045 25 1 9.0872 7.5304 0.0319 26 1 8.2692 5.6266 -1.2285 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1699 1.6931 -2.6537 33 1 2.7330 3.4157 -2.4501 34 1 4.9707 2.4579 -1.2596 35 1 3.9033 3.5794 -0.3479 36 1 5.9852 1.6642 1.1531 37 1 5.3511 3.0984 3.5020 38 1 5.3362 1.3602 3.8850 39 1 7.1150 3.1581 5.2465 40 1 8.2355 1.7274 5.2416 41 1 9.0324 4.3608 4.3043 42 1 9.7701 2.8244 3.6730 43 1 9.9589 6.3670 2.1894 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038528927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:18 Heat of formation + Delta-G solvation = -62.620713 kcal Electronic energy + Delta-G solvation = -23061.611414 eV Core-core repulsion = 19721.228767 eV Total energy + Delta-G solvation = -3340.382648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.54979 -40.03549 -39.24175 -35.59460 -34.43251 -34.21189 -33.37604 -29.94753 -29.66722 -28.90920 -25.27944 -25.16511 -23.94388 -23.14592 -21.77755 -21.30967 -20.70254 -19.01337 -18.32096 -17.58736 -17.06537 -16.89040 -16.66436 -16.03699 -15.77277 -15.54072 -15.25197 -15.04993 -14.73385 -14.48315 -14.06359 -13.84425 -13.61920 -13.32391 -13.12271 -12.90662 -12.78235 -12.67162 -12.59850 -12.33876 -12.31899 -12.01838 -11.86434 -11.77097 -11.69152 -11.52534 -11.35677 -10.83481 -10.77863 -10.45168 -10.04155 -8.87170 -7.84991 -5.16616 1.44199 1.47289 1.52252 1.55434 2.14604 2.48617 2.79057 3.32314 3.39002 3.40724 3.64259 3.67305 3.98552 4.06526 4.11923 4.16001 4.21953 4.23110 4.35712 4.44609 4.52693 4.63445 4.71589 4.78089 4.81426 4.85739 4.88692 4.98574 5.02411 5.06562 5.08222 5.10733 5.29444 5.35038 5.39716 5.45287 5.62492 5.75748 5.99462 6.02649 6.53127 6.96661 7.19371 7.67589 8.62130 9.31848 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017818 B = 0.005024 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.110478 B = 5571.414454 C = 6900.394334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.094 3.906 4 H 0.068 0.932 5 O -0.392 6.392 6 C 0.052 3.948 7 C -0.147 4.147 8 C -0.134 4.134 9 H 0.141 0.859 10 C 0.520 3.480 11 O -0.583 6.583 12 N -0.706 5.706 13 C 0.132 3.868 14 C 0.134 3.866 15 H 0.074 0.926 16 C -0.132 4.132 17 C 0.150 3.850 18 N -0.629 5.629 19 C -0.212 4.212 20 H 0.088 0.912 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.270 1.270 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.410 0.590 37 H 0.039 0.961 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.037 0.963 42 H 0.023 0.977 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.463 -13.191 -5.757 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.164 4.164 3 C 0.036 3.964 4 H 0.086 0.914 5 O -0.312 6.312 6 C -0.024 4.024 7 C -0.185 4.185 8 C -0.155 4.155 9 H 0.159 0.841 10 C 0.307 3.693 11 O -0.464 6.464 12 N -0.356 5.356 13 C 0.007 3.993 14 C 0.028 3.972 15 H 0.091 0.909 16 C -0.171 4.171 17 C 0.024 3.976 18 N -0.355 5.355 19 C -0.340 4.340 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.605 5.605 23 Si 0.793 3.207 24 H -0.212 1.212 25 H -0.228 1.228 26 H -0.196 1.196 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.195 -12.757 -5.415 17.816 hybrid contribution 0.855 1.177 -0.738 1.632 sum -10.341 -11.579 -6.154 16.700 Atomic orbital electron populations 1.21665 0.94947 1.02124 1.01547 1.21849 0.97405 0.94184 1.02929 1.22626 0.91854 0.95021 0.86926 0.91393 1.88405 1.30856 1.78597 1.33355 1.23525 0.83109 1.01680 0.94117 1.23336 1.02031 0.97112 0.95994 1.22959 0.97678 1.02900 0.91983 0.84144 1.20622 0.82275 0.75907 0.90496 1.90659 1.52392 1.51891 1.51461 1.45904 1.06957 1.70377 1.12368 1.21548 0.95004 0.99779 0.82991 1.22668 0.90948 0.90401 0.93225 0.90878 1.23570 0.98413 0.99827 0.95271 1.22157 0.91740 0.97196 0.86486 1.46407 1.35903 1.24810 1.28406 1.19274 1.11584 1.02040 1.01132 0.89475 1.25502 0.98663 1.00531 1.01630 1.69991 1.22871 1.28536 1.39122 0.85362 0.76618 0.78553 0.80142 1.21162 1.22752 1.19563 0.92658 0.91221 0.93753 0.89997 0.90961 0.89425 0.88755 0.86973 0.92166 0.75451 0.94300 0.90151 0.90619 0.88777 0.94487 0.95932 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.82 71.98 0.71 -2.13 16 2 C -0.13 -2.54 5.51 30.59 0.17 -2.37 16 3 C 0.09 2.36 2.97 31.06 0.09 2.45 16 4 H 0.07 2.16 6.78 -2.39 -0.02 2.15 16 5 O -0.39 -9.96 10.63 -148.98 -1.58 -11.55 16 6 C 0.05 1.02 7.77 72.65 0.56 1.58 16 7 C -0.15 -3.28 6.62 32.14 0.21 -3.06 16 8 C -0.13 -3.10 2.92 -10.19 -0.03 -3.13 16 9 H 0.14 2.35 7.85 -2.39 -0.02 2.34 16 10 C 0.52 16.01 7.14 87.66 0.63 16.63 16 11 O -0.58 -22.42 15.42 -3.05 -0.05 -22.46 16 12 N -0.71 -21.29 5.53 -463.04 -2.56 -23.85 16 13 C 0.13 4.40 5.54 86.38 0.48 4.88 16 14 C 0.13 4.67 4.33 45.09 0.20 4.86 16 15 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 16 C -0.13 -4.44 7.86 31.25 0.25 -4.19 16 17 C 0.15 6.73 7.52 86.48 0.65 7.38 16 18 N -0.63 -29.43 3.57 -694.02 -2.48 -31.91 16 19 C -0.21 -10.97 10.51 84.04 0.88 -10.08 16 20 H 0.09 4.21 7.80 -2.91 -0.02 4.19 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.96 -56.69 11.38 21.65 0.25 -56.44 16 23 Si 0.96 44.58 29.55 68.60 2.03 46.61 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H 0.05 1.12 7.88 -2.39 -0.02 1.11 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.06 1.67 8.04 -2.39 -0.02 1.65 16 36 H 0.41 11.19 8.47 -92.71 -0.79 10.40 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.04 1.92 7.15 -2.39 -0.02 1.90 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.24 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -68.88 349.52 1.06 -67.82 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.20 Total: 22.41 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 5.26 Total: 9.38 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.79 Total: -112.20 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -1.63 Total: -34.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -68.88 1.06 -67.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038528927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.194 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds