Wall clock time and date at job start Tue Mar 31 2020 05:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 H 1.09003 * 115.56030 * 29.31507 * 3 2 1 5 5 C 1.52993 * 117.50128 * 243.62371 * 3 2 1 6 6 C 1.53002 * 117.49852 * 174.99826 * 3 2 1 7 7 H 1.08993 * 117.51835 * 0.02562 * 6 3 2 8 8 C 1.50694 * 117.50018 * 214.98016 * 6 3 2 9 9 O 1.21282 * 120.00201 * 359.97438 * 8 6 3 10 10 N 1.34776 * 120.00017 * 179.97438 * 8 6 3 11 11 C 1.46494 * 120.00009 * 0.02562 * 10 8 6 12 12 C 1.46501 * 120.00132 * 180.02562 * 10 8 6 13 13 H 1.09006 * 110.88464 * 3.87956 * 12 10 8 14 14 C 1.55131 * 110.94200 * 127.95569 * 12 10 8 15 15 N 1.47422 * 104.72133 * 155.28995 * 14 12 10 16 16 C 1.36935 * 125.64544 * 155.81733 * 15 14 12 17 17 H 1.08000 * 120.00518 * 359.44443 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.71095 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 C 1.47016 * 108.70287 * 335.55193 * 15 14 12 25 25 C 1.54317 * 107.27257 * 1.29125 * 24 15 14 26 26 H 1.09007 * 110.72064 * 263.82858 * 25 24 15 27 27 O 1.42902 * 110.72314 * 140.55987 * 25 24 15 28 28 H 1.09000 * 109.47340 * 299.99475 * 1 2 3 29 29 H 1.09003 * 109.47155 * 59.99786 * 1 2 3 30 30 H 1.09004 * 109.46781 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46639 * 240.00771 * 2 1 3 32 32 H 1.08989 * 109.47300 * 120.00260 * 2 1 3 33 33 H 1.09009 * 117.50170 * 145.02108 * 5 3 2 34 34 H 1.08996 * 117.51972 * 359.97438 * 5 3 2 35 35 H 1.09000 * 109.47498 * 270.00159 * 11 10 8 36 36 H 1.09002 * 109.46968 * 30.00042 * 11 10 8 37 37 H 1.08996 * 109.47472 * 150.00151 * 11 10 8 38 38 H 1.08996 * 110.49795 * 36.44388 * 14 12 10 39 39 H 1.09001 * 110.34131 * 274.05169 * 14 12 10 40 40 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 41 41 H 1.09000 * 109.88272 * 120.70831 * 24 15 14 42 42 H 1.08998 * 109.88129 * 241.71398 * 24 15 14 43 43 H 0.96702 * 114.00174 * 61.44818 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4815 5 6 2.8439 1.9077 -1.2158 6 6 3.5501 1.6580 0.1183 7 1 4.1806 0.7723 0.1958 8 6 4.0228 2.8621 0.8914 9 8 3.2157 3.6170 1.3911 10 7 5.3423 3.1000 1.0276 11 6 6.3172 2.1885 0.4237 12 6 5.8018 4.2703 1.7797 13 1 4.9598 4.8047 2.2196 14 6 6.8349 3.8627 2.8628 15 7 7.6313 5.0807 3.0982 16 6 8.3256 5.3716 4.2421 17 1 8.3105 4.6820 5.0731 18 6 9.0445 6.5555 4.3356 19 7 9.0583 7.3985 3.3250 20 14 9.9910 6.9526 5.8963 21 1 11.3707 6.4136 5.7891 22 1 10.0478 8.4251 6.0796 23 1 9.3073 6.3347 7.0607 24 6 7.5618 5.9284 1.8990 25 6 6.6495 5.2103 0.8825 26 1 7.2424 4.6340 0.1721 27 8 5.8140 6.1487 0.2018 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.7211 2.9429 -1.5343 34 1 3.0100 1.1862 -2.0157 35 1 6.5707 1.4035 1.1362 36 1 5.8888 1.7406 -0.4731 37 1 7.2173 2.7429 0.1584 38 1 7.4723 3.0571 2.4984 39 1 6.3253 3.5600 3.7776 40 1 9.5603 8.2259 3.3905 41 1 7.1385 6.8996 2.1556 42 1 8.5591 6.0583 1.4786 43 1 6.3003 6.8079 -0.3121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047535943.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:45 Heat of formation + Delta-G solvation = -32.393163 kcal Electronic energy + Delta-G solvation = -22902.547210 eV Core-core repulsion = 19563.475327 eV Total energy + Delta-G solvation = -3339.071883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.15591 -38.29598 -36.81682 -35.16595 -34.72042 -32.30013 -31.78098 -28.69770 -27.38876 -26.66063 -24.98060 -24.07874 -23.44762 -20.80142 -20.43298 -20.02979 -18.71821 -17.39215 -17.06540 -16.48680 -15.91130 -15.18614 -14.92001 -14.69989 -14.51710 -14.12054 -13.95896 -13.23348 -13.07287 -12.76223 -12.58235 -12.51991 -12.34173 -12.27726 -12.19564 -11.89210 -11.50468 -11.36464 -11.22720 -11.19714 -10.88899 -10.79326 -10.38987 -10.17162 -10.10885 -9.95611 -9.82683 -9.57687 -9.24621 -8.71765 -8.30913 -6.93153 -5.77585 -3.12797 2.64962 3.10628 3.37781 3.43008 3.45174 3.76578 4.37597 4.45462 4.64354 4.67339 4.71212 4.95613 5.03518 5.14039 5.20442 5.25572 5.27137 5.40326 5.49107 5.50940 5.59677 5.62022 5.67103 5.73568 5.79229 5.82253 5.91253 5.92315 5.94536 6.07923 6.12555 6.23088 6.49243 6.62975 6.91347 7.34250 7.46117 7.63636 7.72409 8.15719 8.20947 8.42125 9.13041 9.73243 10.36497 11.33889 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033808 B = 0.003589 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.014406 B = 7799.014402 C = 8106.359223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.120 4.120 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.187 4.187 7 H 0.122 0.878 8 C 0.543 3.457 9 O -0.539 6.539 10 N -0.599 5.599 11 C 0.077 3.923 12 C 0.134 3.866 13 H 0.114 0.886 14 C 0.132 3.868 15 N -0.599 5.599 16 C -0.231 4.231 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.152 3.848 25 C 0.065 3.935 26 H 0.055 0.945 27 O -0.561 6.561 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.253 0.747 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -13.933 -10.950 20.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.139 4.139 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.208 4.208 7 H 0.140 0.860 8 C 0.331 3.669 9 O -0.415 6.415 10 N -0.330 5.330 11 C -0.066 4.066 12 C 0.030 3.970 13 H 0.132 0.868 14 C 0.005 3.995 15 N -0.327 5.327 16 C -0.359 4.359 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.746 3.254 21 H -0.215 1.215 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.027 3.973 25 C 0.004 3.996 26 H 0.073 0.927 27 O -0.366 6.366 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.066 0.934 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -10.277 -13.700 -10.306 19.988 hybrid contribution 1.334 0.580 0.485 1.534 sum -8.943 -13.120 -9.821 18.670 Atomic orbital electron populations 1.21741 0.95252 1.01491 1.02203 1.21143 0.96217 0.93728 1.02028 1.22477 0.91683 0.98559 1.01156 0.86454 1.23082 1.02158 1.03142 0.90227 1.22320 0.97359 0.99099 1.02052 0.86004 1.19611 0.81955 0.85395 0.79925 1.90684 1.53491 1.48618 1.48754 1.47640 1.05510 1.26451 1.53425 1.21775 0.93388 0.93632 0.97820 1.22439 0.98285 0.84690 0.91609 0.86825 1.21807 0.91307 0.90929 0.95447 1.44237 1.56768 1.17550 1.14153 1.19077 1.22307 1.03045 0.91423 0.90131 1.24829 1.00538 0.96783 0.98170 1.69932 1.45525 1.11347 1.30186 0.86062 0.79709 0.77390 0.82254 1.21534 1.21592 1.20577 1.21852 0.96458 0.93945 0.85086 1.23563 0.91819 0.90399 0.93803 0.92704 1.86502 1.36644 1.45533 1.67870 0.92442 0.92555 0.92731 0.91763 0.91443 0.88268 0.87983 0.92451 0.91154 0.90703 0.95605 0.93383 0.93617 0.92196 0.93409 0.78006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.87 37.16 0.37 -0.76 16 2 C -0.09 -0.77 6.22 -26.73 -0.17 -0.93 16 3 C -0.12 -1.30 5.25 -90.62 -0.48 -1.77 16 4 H 0.12 1.51 7.60 -51.93 -0.39 1.12 16 5 C -0.15 -1.49 9.88 -26.73 -0.26 -1.76 16 6 C -0.19 -2.20 4.52 -91.77 -0.41 -2.61 16 7 H 0.12 1.15 7.26 -51.93 -0.38 0.78 16 8 C 0.54 9.02 7.46 -10.99 -0.08 8.94 16 9 O -0.54 -11.18 15.64 5.56 0.09 -11.09 16 10 N -0.60 -9.71 2.91 -171.35 -0.50 -10.21 16 11 C 0.08 0.92 8.61 59.84 0.52 1.44 16 12 C 0.13 2.66 3.19 -65.66 -0.21 2.45 16 13 H 0.11 2.64 7.02 -51.93 -0.36 2.28 16 14 C 0.13 2.80 6.79 -2.41 -0.02 2.79 16 15 N -0.60 -15.39 3.39 -169.94 -0.58 -15.96 16 16 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.86 10.31 55.49 0.57 -26.29 16 20 Si 0.92 22.04 29.55 -169.99 -5.02 17.01 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.15 3.69 5.14 -3.07 -0.02 3.67 16 25 C 0.06 1.27 3.89 -24.90 -0.10 1.18 16 26 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 27 O -0.56 -10.79 13.39 -35.23 -0.47 -11.27 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 32 H 0.07 0.55 8.14 -51.94 -0.42 0.13 16 33 H 0.10 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.07 0.66 6.64 -51.93 -0.34 0.31 16 37 H 0.07 0.92 6.41 -51.93 -0.33 0.59 16 38 H 0.03 0.51 7.01 -51.93 -0.36 0.15 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 41 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 42 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 43 H 0.37 5.59 9.11 45.56 0.42 6.00 16 LS Contribution 344.33 15.07 5.19 5.19 Total: -1.00 -33.60 344.33 -8.02 -41.63 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.19 Total: 5.22 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.11 Total: 5.77 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.50 Total: -52.46 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.38 Total: -22.36 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.60 -8.02 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047535943.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.234 kcal (2) G-P(sol) polarization free energy of solvation -33.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds