Wall clock time and date at job start Tue Mar 31 2020 05:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47105 * 2 1 4 4 H 1.08996 * 115.56373 * 29.29917 * 3 2 1 5 5 C 1.53002 * 117.49718 * 243.60455 * 3 2 1 6 6 C 1.52995 * 60.00137 * 252.51153 * 5 3 2 7 7 H 1.09005 * 117.50074 * 107.51192 * 6 5 3 8 8 C 1.50696 * 117.50126 * 252.51128 * 6 5 3 9 9 O 1.21284 * 120.00256 * 68.60581 * 8 6 5 10 10 N 1.34779 * 119.99875 * 248.61139 * 8 6 5 11 11 C 1.46504 * 120.00093 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.68154 * 59.84801 * 12 11 10 14 14 C 1.53291 * 109.68318 * 180.40640 * 12 11 10 15 15 O 1.42965 * 109.22392 * 172.02390 * 14 12 11 16 16 C 1.42963 * 114.16358 * 297.41641 * 15 14 12 17 17 C 1.53293 * 109.22056 * 62.58428 * 16 15 14 18 18 N 1.47150 * 109.68047 * 299.33324 * 12 11 10 19 19 C 1.36942 * 120.98249 * 9.76447 * 18 12 11 20 20 H 1.07996 * 119.99827 * 328.29679 * 19 18 12 21 21 C 1.38816 * 120.00130 * 148.30386 * 19 18 12 22 22 N 1.31612 * 119.99932 * 349.26077 * 21 19 18 23 23 Si 1.86798 * 120.00040 * 169.26603 * 21 19 18 24 24 H 1.48496 * 109.47057 * 89.99556 * 23 21 19 25 25 H 1.48495 * 109.47089 * 209.99916 * 23 21 19 26 26 H 1.48505 * 109.47195 * 329.99940 * 23 21 19 27 27 H 1.09003 * 109.47153 * 300.00661 * 1 2 3 28 28 H 1.09002 * 109.47304 * 60.00222 * 1 2 3 29 29 H 1.08995 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47259 * 239.99730 * 2 1 3 31 31 H 1.09006 * 109.46843 * 119.99688 * 2 1 3 32 32 H 1.08998 * 117.50028 * 145.01892 * 5 3 2 33 33 H 1.08996 * 117.49699 * 0.02562 * 5 3 2 34 34 H 0.97002 * 120.00260 * 359.97438 * 10 8 6 35 35 H 1.09007 * 109.46805 * 299.99617 * 11 10 8 36 36 H 1.08994 * 109.46970 * 59.99349 * 11 10 8 37 37 H 1.08997 * 109.51238 * 291.94683 * 14 12 11 38 38 H 1.09005 * 109.51098 * 52.09776 * 14 12 11 39 39 H 1.08999 * 109.51355 * 302.65792 * 16 15 14 40 40 H 1.09007 * 109.50866 * 182.50258 * 16 15 14 41 41 H 1.09005 * 109.68327 * 187.96815 * 17 16 15 42 42 H 1.09002 * 109.68574 * 67.41664 * 17 16 15 43 43 H 0.97003 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1806 0.7721 0.1966 8 6 4.0226 2.8620 0.8917 9 8 3.2155 3.6169 1.3913 10 7 5.3422 3.1000 1.0280 11 6 5.8016 4.2710 1.7791 12 6 7.3312 4.3075 1.7814 13 1 7.6985 4.3657 0.7568 14 6 7.8173 5.5257 2.5749 15 8 9.2366 5.4508 2.7297 16 6 9.6850 4.3156 3.4743 17 6 9.2945 3.0355 2.7267 18 7 7.8549 3.0936 2.4275 19 6 7.0271 2.0486 2.7406 20 1 5.9976 2.2365 3.0075 21 6 7.5113 0.7479 2.7153 22 7 8.6920 0.4953 2.1915 23 14 6.4870 -0.6440 3.4243 24 1 5.6185 -1.2106 2.3614 25 1 7.3863 -1.7042 3.9462 26 1 5.6419 -0.1237 4.5290 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7217 2.9425 -1.5344 33 1 3.0097 1.1857 -2.0156 34 1 5.9878 2.4961 0.6287 35 1 5.4176 5.1770 1.3102 36 1 5.4376 4.2104 2.8047 37 1 7.5573 6.4376 2.0376 38 1 7.3438 5.5332 3.5568 39 1 9.2183 4.3188 4.4593 40 1 10.7687 4.3571 3.5838 41 1 9.5050 2.1671 3.3510 42 1 9.8600 2.9659 1.7975 43 1 9.0306 -0.4135 2.1741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051124085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:56 Heat of formation + Delta-G solvation = -41.001885 kcal Electronic energy + Delta-G solvation = -23306.943264 eV Core-core repulsion = 19967.498080 eV Total energy + Delta-G solvation = -3339.445185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62029 -38.49776 -36.85668 -35.22695 -33.54354 -32.05940 -31.46095 -30.43464 -27.28050 -26.03484 -23.95050 -23.48432 -23.20383 -21.56107 -20.38490 -19.78481 -19.34287 -17.16784 -16.36078 -15.90577 -15.74538 -15.04716 -14.75401 -14.59683 -14.47925 -14.18029 -13.91259 -13.68738 -13.57595 -13.01431 -12.72305 -12.45110 -12.21859 -12.05990 -11.83551 -11.57668 -11.28983 -11.07743 -10.98348 -10.88988 -10.76198 -10.42711 -10.28379 -10.11556 -10.07330 -9.86757 -9.67584 -9.37000 -8.96388 -8.68777 -8.25246 -6.74035 -5.92919 -3.42954 2.99691 3.25239 3.34422 3.38267 3.73123 4.05421 4.32522 4.51855 4.79601 4.93606 5.02144 5.13421 5.22480 5.24792 5.34712 5.49633 5.56225 5.59764 5.71472 5.72033 5.82739 5.88050 5.94892 6.01238 6.05971 6.09592 6.12891 6.14484 6.18392 6.23934 6.31824 6.46538 6.51222 6.75267 7.05243 7.13814 7.46548 7.69032 7.85183 8.24678 8.28831 8.86553 9.03789 9.63908 10.23501 11.13639 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.005720 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.823670 B = 4894.088316 C = 6139.494250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.121 4.121 4 H 0.116 0.884 5 C -0.151 4.151 6 C -0.184 4.184 7 H 0.124 0.876 8 C 0.538 3.462 9 O -0.566 6.566 10 N -0.690 5.690 11 C 0.136 3.864 12 C 0.125 3.875 13 H 0.041 0.959 14 C 0.056 3.944 15 O -0.392 6.392 16 C 0.035 3.965 17 C 0.144 3.856 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.073 0.927 21 C 0.010 3.990 22 N -0.900 5.900 23 Si 0.896 3.104 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.279 1.279 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.416 0.584 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.029 0.971 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 1.976 -4.475 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.139 4.139 4 H 0.134 0.866 5 C -0.189 4.189 6 C -0.205 4.205 7 H 0.142 0.858 8 C 0.324 3.676 9 O -0.447 6.447 10 N -0.340 5.340 11 C 0.012 3.988 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.023 4.023 15 O -0.311 6.311 16 C -0.043 4.043 17 C 0.019 3.981 18 N -0.317 5.317 19 C -0.384 4.384 20 H 0.091 0.909 21 C -0.190 4.190 22 N -0.543 5.543 23 Si 0.725 3.275 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.204 1.204 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.109 0.891 42 H 0.047 0.953 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.507 2.477 -4.203 8.953 hybrid contribution -0.087 -1.422 0.378 1.474 sum -7.593 1.055 -3.824 8.567 Atomic orbital electron populations 1.21729 0.95429 1.01352 1.01966 1.21159 0.95966 0.94046 1.02231 1.22407 0.92028 0.98287 1.01198 0.86627 1.23043 1.02655 1.02692 0.90479 1.22328 0.97155 0.99716 1.01341 0.85846 1.19515 0.82625 0.85313 0.80174 1.90617 1.54415 1.49325 1.50359 1.45942 1.06544 1.28031 1.53493 1.21153 0.93762 0.87296 0.96617 1.21431 0.91599 0.89382 0.95812 0.94121 1.22866 0.82207 0.97851 0.99382 1.87801 1.21448 1.46103 1.75752 1.23354 0.98271 0.88206 0.94492 1.21403 0.84264 0.94568 0.97869 1.44091 1.04570 1.14337 1.68706 1.19223 0.94676 0.84329 1.40193 0.90934 1.25154 0.97186 0.97452 0.99200 1.69978 1.18504 1.19610 1.46250 0.86393 0.79591 0.82187 0.79299 1.21081 1.21509 1.20393 0.92566 0.92672 0.92844 0.91744 0.91398 0.88577 0.88174 0.74593 0.92441 0.91572 0.89916 0.93501 0.94112 0.90226 0.89075 0.95250 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.87 37.16 0.37 -1.10 16 2 C -0.10 -1.13 6.22 -26.73 -0.17 -1.30 16 3 C -0.12 -1.66 5.25 -90.62 -0.48 -2.14 16 4 H 0.12 1.74 7.60 -51.93 -0.39 1.35 16 5 C -0.15 -1.93 9.88 -26.73 -0.26 -2.20 16 6 C -0.18 -2.91 5.91 -91.78 -0.54 -3.46 16 7 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 8 C 0.54 10.20 7.61 -10.99 -0.08 10.12 16 9 O -0.57 -12.18 16.26 5.55 0.09 -12.09 16 10 N -0.69 -13.19 3.78 -60.29 -0.23 -13.42 16 11 C 0.14 2.56 4.45 -4.04 -0.02 2.54 16 12 C 0.12 2.45 3.21 -67.43 -0.22 2.23 16 13 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 14 C 0.06 1.00 6.29 37.31 0.23 1.23 16 15 O -0.39 -7.65 10.74 -35.23 -0.38 -8.03 16 16 C 0.03 0.67 6.98 37.31 0.26 0.93 16 17 C 0.14 3.27 5.37 -3.53 -0.02 3.25 16 18 N -0.59 -13.60 3.03 -164.30 -0.50 -14.10 16 19 C -0.25 -6.29 7.04 -15.06 -0.11 -6.40 16 20 H 0.07 1.84 5.84 -52.49 -0.31 1.53 16 21 C 0.01 0.25 5.06 -17.43 -0.09 0.16 16 22 N -0.90 -24.06 11.17 55.49 0.62 -23.44 16 23 Si 0.90 20.64 29.57 -169.99 -5.03 15.61 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.68 7.87 -51.93 -0.41 0.28 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.10 1.08 8.03 -51.93 -0.42 0.66 16 34 H 0.42 8.31 7.32 -40.82 -0.30 8.01 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.35 7.56 -51.93 -0.39 0.96 16 37 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.09 2.27 6.37 -51.93 -0.33 1.94 16 42 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -28.49 343.75 -8.54 -37.03 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -7.18 Total: 9.38 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -1.12 Total: 3.87 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.11 Total: -50.96 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.29 Total: -20.12 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.49 -8.54 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051124085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.974 kcal (2) G-P(sol) polarization free energy of solvation -28.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds