Wall clock time and date at job start Tue Mar 31 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47105 * 2 1 4 4 H 1.08996 * 115.56373 * 29.29917 * 3 2 1 5 5 C 1.53002 * 117.49718 * 243.60455 * 3 2 1 6 6 C 1.52995 * 60.00137 * 252.51153 * 5 3 2 7 7 H 1.09005 * 117.50074 * 107.51192 * 6 5 3 8 8 C 1.50696 * 117.50126 * 252.51128 * 6 5 3 9 9 O 1.21284 * 120.00256 * 68.60581 * 8 6 5 10 10 N 1.34779 * 119.99875 * 248.61139 * 8 6 5 11 11 C 1.46504 * 120.00093 * 179.97438 * 10 8 6 12 12 C 1.52997 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.68154 * 59.84801 * 12 11 10 14 14 C 1.53291 * 109.68318 * 180.40640 * 12 11 10 15 15 O 1.42965 * 109.22392 * 172.02390 * 14 12 11 16 16 C 1.42963 * 114.16358 * 297.41641 * 15 14 12 17 17 C 1.53293 * 109.22056 * 62.58428 * 16 15 14 18 18 N 1.47150 * 109.68047 * 299.33324 * 12 11 10 19 19 C 1.36942 * 120.98249 * 9.76447 * 18 12 11 20 20 H 1.07996 * 119.99827 * 328.29679 * 19 18 12 21 21 C 1.38816 * 120.00130 * 148.30386 * 19 18 12 22 22 N 1.31612 * 119.99932 * 349.26077 * 21 19 18 23 23 Si 1.86798 * 120.00040 * 169.26603 * 21 19 18 24 24 H 1.48496 * 109.47057 * 89.99556 * 23 21 19 25 25 H 1.48495 * 109.47089 * 209.99916 * 23 21 19 26 26 H 1.48505 * 109.47195 * 329.99940 * 23 21 19 27 27 H 1.09003 * 109.47153 * 300.00661 * 1 2 3 28 28 H 1.09002 * 109.47304 * 60.00222 * 1 2 3 29 29 H 1.08995 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47259 * 239.99730 * 2 1 3 31 31 H 1.09006 * 109.46843 * 119.99688 * 2 1 3 32 32 H 1.08998 * 117.50028 * 145.01892 * 5 3 2 33 33 H 1.08996 * 117.49699 * 0.02562 * 5 3 2 34 34 H 0.97002 * 120.00260 * 359.97438 * 10 8 6 35 35 H 1.09007 * 109.46805 * 299.99617 * 11 10 8 36 36 H 1.08994 * 109.46970 * 59.99349 * 11 10 8 37 37 H 1.08997 * 109.51238 * 291.94683 * 14 12 11 38 38 H 1.09005 * 109.51098 * 52.09776 * 14 12 11 39 39 H 1.08999 * 109.51355 * 302.65792 * 16 15 14 40 40 H 1.09007 * 109.50866 * 182.50258 * 16 15 14 41 41 H 1.09005 * 109.68327 * 187.96815 * 17 16 15 42 42 H 1.09002 * 109.68574 * 67.41664 * 17 16 15 43 43 H 0.97003 * 120.00319 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1717 0.4812 5 6 2.8443 1.9074 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1806 0.7721 0.1966 8 6 4.0226 2.8620 0.8917 9 8 3.2155 3.6169 1.3913 10 7 5.3422 3.1000 1.0280 11 6 5.8016 4.2710 1.7791 12 6 7.3312 4.3075 1.7814 13 1 7.6985 4.3657 0.7568 14 6 7.8173 5.5257 2.5749 15 8 9.2366 5.4508 2.7297 16 6 9.6850 4.3156 3.4743 17 6 9.2945 3.0355 2.7267 18 7 7.8549 3.0936 2.4275 19 6 7.0271 2.0486 2.7406 20 1 5.9976 2.2365 3.0075 21 6 7.5113 0.7479 2.7153 22 7 8.6920 0.4953 2.1915 23 14 6.4870 -0.6440 3.4243 24 1 5.6185 -1.2106 2.3614 25 1 7.3863 -1.7042 3.9462 26 1 5.6419 -0.1237 4.5290 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.7217 2.9425 -1.5344 33 1 3.0097 1.1857 -2.0156 34 1 5.9878 2.4961 0.6287 35 1 5.4176 5.1770 1.3102 36 1 5.4376 4.2104 2.8047 37 1 7.5573 6.4376 2.0376 38 1 7.3438 5.5332 3.5568 39 1 9.2183 4.3188 4.4593 40 1 10.7687 4.3571 3.5838 41 1 9.5050 2.1671 3.3510 42 1 9.8600 2.9659 1.7975 43 1 9.0306 -0.4135 2.1741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051124085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:55 Heat of formation + Delta-G solvation = -58.157338 kcal Electronic energy + Delta-G solvation = -23307.687181 eV Core-core repulsion = 19967.498080 eV Total energy + Delta-G solvation = -3340.189101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08058 -40.05215 -38.10893 -36.85141 -35.28090 -33.35216 -32.85978 -32.11287 -29.05032 -27.53657 -25.29446 -24.98409 -24.45177 -23.13264 -21.49387 -21.41361 -20.81862 -18.79689 -17.93249 -17.57642 -17.29475 -16.51440 -16.28879 -16.17249 -15.74238 -15.57650 -15.35849 -15.16575 -15.04938 -14.71077 -14.32971 -13.63852 -13.46006 -13.34339 -13.11470 -12.97591 -12.88830 -12.72450 -12.51830 -12.19576 -12.16704 -12.02316 -11.93161 -11.87540 -11.32319 -11.24068 -11.01596 -10.86342 -10.60378 -10.54767 -9.85887 -8.62359 -7.88297 -5.39803 1.39419 1.45155 1.51536 1.58203 2.30811 2.45217 2.87091 3.02079 3.27962 3.42669 3.69906 3.79518 3.89728 4.02080 4.19430 4.24056 4.27668 4.35267 4.46349 4.47662 4.54782 4.59710 4.62598 4.64776 4.73383 4.75853 4.90454 4.98701 5.01478 5.10092 5.14029 5.22041 5.27429 5.28624 5.48268 5.57004 5.63046 5.68412 6.28400 6.36421 6.70933 7.09923 7.33799 7.75137 8.31751 9.16142 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.005720 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.823670 B = 4894.088316 C = 6139.494250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.100 0.900 5 C -0.126 4.126 6 C -0.209 4.209 7 H 0.121 0.879 8 C 0.535 3.465 9 O -0.596 6.596 10 N -0.692 5.692 11 C 0.142 3.858 12 C 0.126 3.874 13 H 0.037 0.963 14 C 0.058 3.942 15 O -0.397 6.397 16 C 0.046 3.954 17 C 0.150 3.850 18 N -0.606 5.606 19 C -0.243 4.243 20 H 0.065 0.935 21 C -0.031 4.031 22 N -0.926 5.926 23 Si 0.943 3.057 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.285 1.285 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.412 0.588 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.118 0.882 38 H 0.048 0.952 39 H 0.043 0.957 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.007 0.993 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.121 2.392 -5.313 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.135 4.135 4 H 0.118 0.882 5 C -0.163 4.163 6 C -0.230 4.230 7 H 0.139 0.861 8 C 0.323 3.677 9 O -0.479 6.479 10 N -0.341 5.341 11 C 0.018 3.982 12 C 0.020 3.980 13 H 0.055 0.945 14 C -0.021 4.021 15 O -0.315 6.315 16 C -0.032 4.032 17 C 0.024 3.976 18 N -0.332 5.332 19 C -0.373 4.373 20 H 0.083 0.917 21 C -0.227 4.227 22 N -0.571 5.571 23 Si 0.773 3.227 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.211 1.211 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.146 0.854 34 H 0.249 0.751 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.136 0.864 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.025 0.975 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.444 2.911 -5.045 10.258 hybrid contribution 0.181 -1.486 0.632 1.625 sum -8.263 1.425 -4.413 9.475 Atomic orbital electron populations 1.21714 0.94048 1.02345 1.02111 1.21190 0.97165 0.92469 1.02446 1.22473 0.90249 0.99337 1.01490 0.88187 1.23177 0.99733 1.03534 0.89856 1.22300 0.98548 0.98316 1.03827 0.86084 1.20038 0.82116 0.85818 0.79776 1.90593 1.54926 1.50695 1.51679 1.45993 1.06725 1.28032 1.53396 1.21106 0.93144 0.88179 0.95817 1.21550 0.92006 0.88812 0.95635 0.94495 1.22986 0.81336 0.98165 0.99606 1.87806 1.22370 1.45652 1.75702 1.23224 0.99879 0.86329 0.93766 1.21234 0.84050 0.95559 0.96740 1.44295 1.04594 1.15030 1.69241 1.19226 0.94387 0.84842 1.38816 0.91713 1.25618 0.97971 0.99026 1.00114 1.70094 1.19691 1.19457 1.47883 0.85648 0.78342 0.80168 0.78591 1.20233 1.22074 1.21067 0.93275 0.91726 0.91431 0.90150 0.92563 0.88467 0.85404 0.75137 0.90327 0.93442 0.86405 0.93341 0.93868 0.87665 0.91693 0.97460 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.87 71.98 0.71 -1.87 16 2 C -0.10 -2.05 6.22 30.59 0.19 -1.86 16 3 C -0.12 -3.07 5.25 -10.79 -0.06 -3.12 16 4 H 0.10 2.96 7.60 -2.39 -0.02 2.94 16 5 C -0.13 -2.94 9.88 30.59 0.30 -2.64 16 6 C -0.21 -6.43 5.91 -11.54 -0.07 -6.50 16 7 H 0.12 3.78 8.14 -2.38 -0.02 3.76 16 8 C 0.53 20.20 7.61 87.66 0.67 20.87 16 9 O -0.60 -25.64 16.26 -3.04 -0.05 -25.69 16 10 N -0.69 -26.40 3.78 -463.05 -1.75 -28.15 16 11 C 0.14 5.24 4.45 86.38 0.38 5.62 16 12 C 0.13 4.84 3.21 44.96 0.14 4.99 16 13 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 14 C 0.06 1.92 6.29 72.08 0.45 2.37 16 15 O -0.40 -14.60 10.74 -148.98 -1.60 -16.20 16 16 C 0.05 1.70 6.98 72.08 0.50 2.21 16 17 C 0.15 6.83 5.37 86.35 0.46 7.29 16 18 N -0.61 -27.90 3.03 -673.73 -2.04 -29.94 16 19 C -0.24 -12.07 7.04 84.03 0.59 -11.48 16 20 H 0.07 3.32 5.84 -2.91 -0.02 3.30 16 21 C -0.03 -1.57 5.06 84.86 0.43 -1.14 16 22 N -0.93 -50.40 11.17 21.65 0.24 -50.16 16 23 Si 0.94 42.81 29.57 68.60 2.03 44.84 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.48 7.87 -2.39 -0.02 1.46 16 31 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 32 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.13 2.30 8.03 -2.39 -0.02 2.28 16 34 H 0.41 16.52 7.32 -92.71 -0.68 15.84 16 35 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.05 1.93 7.56 -2.39 -0.02 1.92 16 37 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.11 3.36 8.14 -2.38 -0.02 3.34 16 41 H 0.06 3.30 6.37 -2.38 -0.02 3.28 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 Total: -1.00 -61.11 343.75 1.85 -59.26 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.31 Total: 31.32 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 4.71 Total: 14.72 kcal Atomic # 7 Polarization: -104.70 SS G_CDS: -3.55 Total: -108.25 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -1.65 Total: -41.89 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.11 1.85 -59.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051124085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.100 kcal (2) G-P(sol) polarization free energy of solvation -61.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds