Wall clock time and date at job start Tue Mar 31 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.09002 * 109.46903 * 305.00249 * 3 2 1 5 5 C 1.53001 * 109.46948 * 64.99768 * 3 2 1 6 6 C 1.50702 * 109.46974 * 184.99986 * 3 2 1 7 7 O 1.21274 * 119.99756 * 265.02849 * 6 3 2 8 8 N 1.34771 * 119.99917 * 85.03268 * 6 3 2 9 9 C 1.47135 * 121.06249 * 4.50786 * 8 6 3 10 10 C 1.53228 * 108.72175 * 232.31665 * 9 8 6 11 11 O 1.43124 * 109.35399 * 305.79938 * 10 9 8 12 12 C 1.42360 * 113.99199 * 59.78104 * 11 10 9 13 13 C 1.52926 * 114.29305 * 74.95765 * 12 11 10 14 14 N 1.47164 * 87.84227 * 88.27508 * 13 12 11 15 15 C 1.36939 * 135.99940 * 206.64415 * 14 13 12 16 16 H 1.08003 * 119.99415 * 6.45783 * 15 14 13 17 17 C 1.38808 * 120.00386 * 186.46554 * 15 14 13 18 18 N 1.31613 * 120.00491 * 173.33133 * 17 15 14 19 19 Si 1.86805 * 119.99979 * 353.33311 * 17 15 14 20 20 H 1.48490 * 109.47445 * 176.01022 * 19 17 15 21 21 H 1.48501 * 109.46802 * 296.00833 * 19 17 15 22 22 H 1.48503 * 109.46945 * 56.00576 * 19 17 15 23 23 C 1.47180 * 88.00711 * 26.89899 * 14 13 12 24 24 C 1.47359 * 121.06341 * 184.52499 * 8 6 3 25 25 H 1.09000 * 109.46979 * 60.00419 * 1 2 3 26 26 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47179 * 299.99926 * 1 2 3 28 28 H 1.09002 * 109.47565 * 240.00054 * 2 1 3 29 29 H 1.09001 * 109.47083 * 120.00122 * 2 1 3 30 30 H 1.08996 * 109.47007 * 52.86570 * 5 3 2 31 31 H 1.09004 * 109.46967 * 172.85921 * 5 3 2 32 32 H 1.08997 * 109.47171 * 292.86395 * 5 3 2 33 33 H 1.09001 * 109.59651 * 112.54619 * 9 8 6 34 34 H 1.08995 * 109.59262 * 352.08776 * 9 8 6 35 35 H 1.09004 * 109.48534 * 185.83449 * 10 9 8 36 36 H 1.08994 * 109.48996 * 65.76854 * 10 9 8 37 37 H 1.08997 * 113.49514 * 333.52844 * 13 12 11 38 38 H 1.09001 * 113.54580 * 203.02388 * 13 12 11 39 39 H 0.97010 * 119.99804 * 355.01786 * 18 17 15 40 40 H 1.08998 * 113.49020 * 87.84154 * 23 14 13 41 41 H 1.08999 * 113.48833 * 218.35587 * 23 14 13 42 42 H 1.09006 * 109.73969 * 12.08735 * 24 8 6 43 43 H 1.09001 * 109.74989 * 251.37096 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.2323 1.5056 0.8713 8 7 4.1178 1.3778 -1.3405 9 6 3.3057 1.4018 -2.5672 10 6 3.6969 0.2044 -3.4395 11 8 5.1108 0.2204 -3.6606 12 6 5.8841 0.1487 -2.4675 13 6 5.9245 -1.2391 -1.8264 14 7 7.0897 -1.5361 -2.6748 15 6 7.6580 -2.6617 -3.2089 16 1 7.1623 -3.6161 -3.1094 17 6 8.8712 -2.5762 -3.8780 18 7 9.4818 -3.6719 -4.2763 19 14 9.6372 -0.9057 -4.2131 20 1 10.9662 -1.0893 -4.8495 21 1 8.7558 -0.1304 -5.1226 22 1 9.7985 -0.1695 -2.9335 23 6 7.3801 -0.0934 -2.6922 24 6 5.5810 1.2784 -1.4848 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9617 1.5192 2.1514 31 1 2.1041 3.1089 1.3638 32 1 0.5515 2.2389 1.3382 33 1 3.4930 2.3274 -3.1116 34 1 2.2492 1.3353 -2.3074 35 1 3.1783 0.2667 -4.3963 36 1 3.4182 -0.7202 -2.9340 37 1 5.0519 -1.8500 -2.0573 38 1 6.1561 -1.2203 -0.7614 39 1 9.1218 -4.5411 -4.0398 40 1 8.0031 0.2345 -1.8599 41 1 7.7401 0.2657 -3.6563 42 1 6.0320 1.0563 -0.5176 43 1 5.9778 2.2178 -1.8697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053163757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:06 Heat of formation + Delta-G solvation = -11.910282 kcal Electronic energy + Delta-G solvation = -23774.048549 eV Core-core repulsion = 20435.864871 eV Total energy + Delta-G solvation = -3338.183678 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.80117 -39.28518 -36.65557 -35.72998 -34.63441 -32.45949 -30.48994 -29.91701 -28.20548 -26.61447 -25.64249 -24.86774 -23.45721 -22.06004 -21.02626 -19.36021 -18.78098 -17.64555 -17.47977 -16.51359 -15.94476 -15.75582 -15.26965 -14.88267 -14.70790 -14.32574 -14.12049 -13.82162 -13.57430 -13.26691 -13.10924 -12.97951 -12.74921 -12.45142 -12.28009 -12.01111 -11.77213 -11.68099 -11.37472 -11.13852 -11.03583 -10.97131 -10.78584 -10.49083 -10.45792 -9.87814 -9.66385 -9.17094 -9.06431 -8.88740 -8.46825 -7.15817 -6.27123 -3.20200 2.53112 2.81108 3.43435 3.48780 3.66440 3.80162 4.24403 4.51164 4.58660 4.60447 4.63277 4.75281 4.80737 4.85095 5.00901 5.03392 5.09130 5.18564 5.22766 5.31871 5.45098 5.53725 5.57202 5.60825 5.65786 5.69229 5.74529 5.75401 5.86653 5.98964 6.02924 6.06199 6.14311 6.18469 6.25265 6.37550 6.49229 7.07732 7.28890 7.51290 8.09117 8.25274 8.99336 9.51497 10.35769 11.23240 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.004621 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.256591 B = 6058.033353 C = 6203.479228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C -0.111 4.111 4 H 0.091 0.909 5 C -0.133 4.133 6 C 0.520 3.480 7 O -0.538 6.538 8 N -0.612 5.612 9 C 0.070 3.930 10 C 0.046 3.954 11 O -0.335 6.335 12 C 0.058 3.942 13 C 0.107 3.893 14 N -0.618 5.618 15 C -0.300 4.300 16 H 0.083 0.917 17 C -0.023 4.023 18 N -0.934 5.934 19 Si 1.067 2.933 20 H -0.294 1.294 21 H -0.289 1.289 22 H -0.287 1.287 23 C 0.115 3.885 24 C 0.101 3.899 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.260 0.740 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.386 13.248 6.385 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.153 4.153 3 C -0.132 4.132 4 H 0.109 0.891 5 C -0.191 4.191 6 C 0.308 3.692 7 O -0.415 6.415 8 N -0.346 5.346 9 C -0.053 4.053 10 C -0.032 4.032 11 O -0.252 6.252 12 C 0.016 3.984 13 C -0.020 4.020 14 N -0.346 5.346 15 C -0.426 4.426 16 H 0.100 0.900 17 C -0.222 4.222 18 N -0.577 5.577 19 Si 0.899 3.101 20 H -0.222 1.222 21 H -0.217 1.217 22 H -0.214 1.214 23 C -0.011 4.011 24 C -0.022 4.022 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.533 13.785 5.883 23.067 hybrid contribution -1.476 -0.852 0.898 1.927 sum -19.010 12.933 6.781 23.971 Atomic orbital electron populations 1.21799 0.94821 1.02101 1.02048 1.21501 0.96518 0.94038 1.03262 1.21396 0.91870 0.98948 1.01017 0.89051 1.21663 1.00793 1.00680 0.95923 1.20689 0.90561 0.75551 0.82408 1.90687 1.64990 1.49567 1.36260 1.48233 1.07452 1.73191 1.05748 1.22520 0.96124 1.00432 0.86214 1.22922 0.83501 0.96586 1.00206 1.87987 1.15322 1.93950 1.27966 1.23144 0.94846 0.94309 0.86105 1.22800 0.92089 0.92457 0.94685 1.45813 1.30707 1.01574 1.56471 1.20116 1.03765 0.85345 1.33415 0.89980 1.25692 0.93220 1.05197 0.98056 1.70921 1.40679 0.97633 1.48423 0.83774 0.75552 0.74482 0.76252 1.22153 1.21726 1.21428 1.22752 0.90687 0.86950 1.00707 1.22149 0.79792 0.99023 1.01249 0.92577 0.92299 0.92234 0.91421 0.91018 0.91581 0.92393 0.91858 0.90352 0.88764 0.87745 0.92600 0.93633 0.93655 0.92985 0.92024 0.91716 0.87835 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.12 -1.00 5.24 -26.73 -0.14 -1.14 16 3 C -0.11 -1.03 1.90 -91.77 -0.17 -1.20 16 4 H 0.09 0.65 6.33 -51.93 -0.33 0.33 16 5 C -0.13 -1.17 8.19 37.16 0.30 -0.87 16 6 C 0.52 6.91 6.81 -10.99 -0.07 6.84 16 7 O -0.54 -9.17 15.75 5.56 0.09 -9.08 16 8 N -0.61 -7.96 3.03 -172.48 -0.52 -8.48 16 9 C 0.07 0.70 6.42 -3.58 -0.02 0.68 16 10 C 0.05 0.57 6.90 37.28 0.26 0.83 16 11 O -0.33 -6.02 10.55 -35.23 -0.37 -6.39 16 12 C 0.06 1.06 1.29 -90.67 -0.12 0.95 16 13 C 0.11 2.22 7.90 -8.19 -0.06 2.16 16 14 N -0.62 -15.79 3.70 -184.54 -0.68 -16.47 16 15 C -0.30 -8.93 11.08 -15.06 -0.17 -9.10 16 16 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 17 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 18 N -0.93 -30.06 13.70 55.49 0.76 -29.30 16 19 Si 1.07 27.31 25.14 -169.99 -4.27 23.04 16 20 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.29 -7.10 6.54 56.52 0.37 -6.73 16 22 H -0.29 -6.77 6.22 56.52 0.35 -6.42 16 23 C 0.12 2.51 5.15 -8.03 -0.04 2.47 16 24 C 0.10 1.54 5.81 -3.69 -0.02 1.52 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.35 6.73 -51.93 -0.35 0.00 16 28 H 0.07 0.61 8.02 -51.93 -0.42 0.20 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 32 H 0.06 0.41 6.93 -51.93 -0.36 0.05 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.67 5.36 -51.93 -0.28 0.39 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.72 7.30 -51.93 -0.38 0.35 16 37 H 0.05 0.94 7.36 -51.93 -0.38 0.56 16 38 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 39 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 40 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 41 H 0.07 1.48 4.64 -51.93 -0.24 1.24 16 42 H 0.10 1.68 6.94 -51.93 -0.36 1.32 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 330.66 15.07 4.98 4.98 Total: -1.00 -35.50 330.66 -6.96 -42.46 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -6.94 Total: -2.47 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 0.00 Total: 1.72 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.44 Total: -54.26 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.28 Total: -15.47 kcal Atomic # 14 Polarization: 27.31 SS G_CDS: -4.27 Total: 23.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.50 -6.96 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053163757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.546 kcal (2) G-P(sol) polarization free energy of solvation -35.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds