Wall clock time and date at job start Tue Mar 31 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47130 * 2 1 4 4 H 1.09002 * 109.46903 * 305.00249 * 3 2 1 5 5 C 1.53001 * 109.46948 * 64.99768 * 3 2 1 6 6 C 1.50702 * 109.46974 * 184.99986 * 3 2 1 7 7 O 1.21274 * 119.99756 * 265.02849 * 6 3 2 8 8 N 1.34771 * 119.99917 * 85.03268 * 6 3 2 9 9 C 1.47135 * 121.06249 * 4.50786 * 8 6 3 10 10 C 1.53228 * 108.72175 * 232.31665 * 9 8 6 11 11 O 1.43124 * 109.35399 * 305.79938 * 10 9 8 12 12 C 1.42360 * 113.99199 * 59.78104 * 11 10 9 13 13 C 1.52926 * 114.29305 * 74.95765 * 12 11 10 14 14 N 1.47164 * 87.84227 * 88.27508 * 13 12 11 15 15 C 1.36939 * 135.99940 * 206.64415 * 14 13 12 16 16 H 1.08003 * 119.99415 * 6.45783 * 15 14 13 17 17 C 1.38808 * 120.00386 * 186.46554 * 15 14 13 18 18 N 1.31613 * 120.00491 * 173.33133 * 17 15 14 19 19 Si 1.86805 * 119.99979 * 353.33311 * 17 15 14 20 20 H 1.48490 * 109.47445 * 176.01022 * 19 17 15 21 21 H 1.48501 * 109.46802 * 296.00833 * 19 17 15 22 22 H 1.48503 * 109.46945 * 56.00576 * 19 17 15 23 23 C 1.47180 * 88.00711 * 26.89899 * 14 13 12 24 24 C 1.47359 * 121.06341 * 184.52499 * 8 6 3 25 25 H 1.09000 * 109.46979 * 60.00419 * 1 2 3 26 26 H 1.09000 * 109.46853 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47179 * 299.99926 * 1 2 3 28 28 H 1.09002 * 109.47565 * 240.00054 * 2 1 3 29 29 H 1.09001 * 109.47083 * 120.00122 * 2 1 3 30 30 H 1.08996 * 109.47007 * 52.86570 * 5 3 2 31 31 H 1.09004 * 109.46967 * 172.85921 * 5 3 2 32 32 H 1.08997 * 109.47171 * 292.86395 * 5 3 2 33 33 H 1.09001 * 109.59651 * 112.54619 * 9 8 6 34 34 H 1.08995 * 109.59262 * 352.08776 * 9 8 6 35 35 H 1.09004 * 109.48534 * 185.83449 * 10 9 8 36 36 H 1.08994 * 109.48996 * 65.76854 * 10 9 8 37 37 H 1.08997 * 113.49514 * 333.52844 * 13 12 11 38 38 H 1.09001 * 113.54580 * 203.02388 * 13 12 11 39 39 H 0.97010 * 119.99804 * 355.01786 * 18 17 15 40 40 H 1.08998 * 113.49020 * 87.84154 * 23 14 13 41 41 H 1.08999 * 113.48833 * 218.35587 * 23 14 13 42 42 H 1.09006 * 109.73969 * 12.08735 * 24 8 6 43 43 H 1.09001 * 109.74989 * 251.37096 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 3.5419 1.4443 -0.1238 7 8 4.2323 1.5056 0.8713 8 7 4.1178 1.3778 -1.3405 9 6 3.3057 1.4018 -2.5672 10 6 3.6969 0.2044 -3.4395 11 8 5.1108 0.2204 -3.6606 12 6 5.8841 0.1487 -2.4675 13 6 5.9245 -1.2391 -1.8264 14 7 7.0897 -1.5361 -2.6748 15 6 7.6580 -2.6617 -3.2089 16 1 7.1623 -3.6161 -3.1094 17 6 8.8712 -2.5762 -3.8780 18 7 9.4818 -3.6719 -4.2763 19 14 9.6372 -0.9057 -4.2131 20 1 10.9662 -1.0893 -4.8495 21 1 8.7558 -0.1304 -5.1226 22 1 9.7985 -0.1695 -2.9335 23 6 7.3801 -0.0934 -2.6922 24 6 5.5810 1.2784 -1.4848 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.9617 1.5192 2.1514 31 1 2.1041 3.1089 1.3638 32 1 0.5515 2.2389 1.3382 33 1 3.4930 2.3274 -3.1116 34 1 2.2492 1.3353 -2.3074 35 1 3.1783 0.2667 -4.3963 36 1 3.4182 -0.7202 -2.9340 37 1 5.0519 -1.8500 -2.0573 38 1 6.1561 -1.2203 -0.7614 39 1 9.1218 -4.5411 -4.0398 40 1 8.0031 0.2345 -1.8599 41 1 7.7401 0.2657 -3.6563 42 1 6.0320 1.0563 -0.5176 43 1 5.9778 2.2178 -1.8697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053163757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:05 Heat of formation + Delta-G solvation = -38.269919 kcal Electronic energy + Delta-G solvation = -23775.191589 eV Core-core repulsion = 20435.864871 eV Total energy + Delta-G solvation = -3339.326718 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.02457 -40.56193 -38.07570 -36.52136 -35.79473 -34.63918 -31.86620 -30.60192 -29.54175 -28.10164 -27.33858 -25.76631 -24.59005 -23.39190 -22.30118 -20.81160 -19.79561 -19.60369 -18.58530 -17.91785 -17.27097 -16.93693 -16.32584 -16.21462 -15.83703 -15.55629 -15.47485 -15.16359 -15.04431 -14.91018 -14.45346 -13.94624 -13.59585 -13.49193 -13.25281 -13.09258 -12.90025 -12.75494 -12.67233 -12.43590 -12.37229 -12.21105 -11.91476 -11.67462 -11.60511 -11.45063 -11.28687 -11.08242 -10.79629 -10.62058 -9.62751 -9.28565 -8.66350 -5.51993 1.37499 1.48060 1.52992 1.67077 1.82724 2.49862 2.52572 2.85202 3.14121 3.31833 3.43126 3.67292 3.83362 3.87847 3.95338 4.06881 4.21552 4.24345 4.39768 4.43796 4.45639 4.47609 4.54137 4.56285 4.58259 4.63595 4.72527 4.77493 4.86619 4.90145 4.97221 5.04727 5.08731 5.15726 5.17881 5.25995 5.37750 5.47718 5.88654 6.21620 6.32382 6.63727 7.08631 7.26045 8.18661 8.85456 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029428 B = 0.004621 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.256591 B = 6058.033353 C = 6203.479228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.103 4.103 4 H 0.125 0.875 5 C -0.131 4.131 6 C 0.514 3.486 7 O -0.583 6.583 8 N -0.614 5.614 9 C 0.074 3.926 10 C 0.036 3.964 11 O -0.363 6.363 12 C 0.088 3.912 13 C 0.104 3.896 14 N -0.650 5.650 15 C -0.293 4.293 16 H 0.047 0.953 17 C -0.080 4.080 18 N -0.968 5.968 19 Si 1.106 2.894 20 H -0.301 1.301 21 H -0.272 1.272 22 H -0.256 1.256 23 C 0.103 3.897 24 C 0.108 3.892 25 H 0.074 0.926 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.020 16.434 6.208 28.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.124 4.124 4 H 0.143 0.857 5 C -0.189 4.189 6 C 0.304 3.696 7 O -0.463 6.463 8 N -0.347 5.347 9 C -0.047 4.047 10 C -0.040 4.040 11 O -0.281 6.281 12 C 0.046 3.954 13 C -0.022 4.022 14 N -0.378 5.378 15 C -0.420 4.420 16 H 0.065 0.935 17 C -0.272 4.272 18 N -0.613 5.613 19 Si 0.931 3.069 20 H -0.228 1.228 21 H -0.199 1.199 22 H -0.181 1.181 23 C -0.021 4.021 24 C -0.016 4.016 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.244 16.994 5.722 27.044 hybrid contribution -0.799 -1.931 0.987 2.311 sum -21.042 15.063 6.709 26.734 Atomic orbital electron populations 1.21781 0.92675 1.02559 1.03300 1.21491 0.98273 0.93334 1.02081 1.21472 0.88710 0.99699 1.02525 0.85723 1.21670 1.02522 0.99743 0.94961 1.21489 0.92175 0.74265 0.81679 1.90669 1.66312 1.51532 1.37763 1.48351 1.06682 1.72737 1.06921 1.22727 0.97520 0.99959 0.84535 1.23292 0.80730 0.97500 1.02484 1.87936 1.18192 1.94049 1.27938 1.22633 0.92779 0.93505 0.86479 1.22969 0.90269 0.94522 0.94415 1.45887 1.32197 1.02228 1.57520 1.19971 1.03453 0.85856 1.32708 0.93483 1.27083 0.94126 1.07749 0.98260 1.71025 1.41912 0.97695 1.50671 0.83328 0.74585 0.71115 0.77843 1.22849 1.19891 1.18079 1.22997 0.93807 0.84392 1.00947 1.21897 0.81787 0.98388 0.99498 0.90685 0.92351 0.91580 0.91804 0.93183 0.93603 0.93075 0.88983 0.88330 0.85131 0.84761 0.93543 0.94015 0.93260 0.94522 0.90398 0.92232 0.89166 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 71.98 0.70 -0.66 16 2 C -0.11 -1.68 5.24 30.60 0.16 -1.52 16 3 C -0.10 -1.57 1.90 -11.54 -0.02 -1.59 16 4 H 0.13 1.08 6.33 -2.39 -0.02 1.07 16 5 C -0.13 -1.98 8.19 71.98 0.59 -1.39 16 6 C 0.51 12.52 6.81 87.66 0.60 13.12 16 7 O -0.58 -19.43 15.75 -3.01 -0.05 -19.48 16 8 N -0.61 -14.10 3.03 -818.00 -2.48 -16.58 16 9 C 0.07 1.15 6.42 86.33 0.55 1.70 16 10 C 0.04 0.79 6.90 72.06 0.50 1.29 16 11 O -0.36 -12.19 10.55 -148.98 -1.57 -13.77 16 12 C 0.09 3.08 1.29 -10.82 -0.01 3.07 16 13 C 0.10 4.33 7.90 83.33 0.66 4.99 16 14 N -0.65 -33.37 3.70 -738.65 -2.73 -36.10 16 15 C -0.29 -17.94 11.08 84.03 0.93 -17.01 16 16 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 17 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 18 N -0.97 -64.49 13.70 21.65 0.30 -64.19 16 19 Si 1.11 55.02 25.14 68.60 1.72 56.74 16 20 H -0.30 -15.15 7.11 99.48 0.71 -14.45 16 21 H -0.27 -12.67 6.54 99.48 0.65 -12.02 16 22 H -0.26 -11.28 6.22 99.48 0.62 -10.66 16 23 C 0.10 4.36 5.15 83.42 0.43 4.79 16 24 C 0.11 3.04 5.81 86.14 0.50 3.54 16 25 H 0.07 0.44 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.54 6.73 -2.39 -0.02 0.53 16 28 H 0.06 0.99 8.02 -2.39 -0.02 0.97 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.87 8.08 -2.39 -0.02 0.85 16 31 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.09 0.85 6.93 -2.39 -0.02 0.83 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.13 1.08 5.36 -2.39 -0.01 1.07 16 35 H 0.13 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.05 1.10 7.30 -2.39 -0.02 1.08 16 37 H 0.04 1.73 7.36 -2.39 -0.02 1.72 16 38 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 39 H 0.25 16.45 8.73 -92.70 -0.81 15.64 16 40 H 0.08 3.04 7.67 -2.39 -0.02 3.02 16 41 H 0.06 2.59 4.64 -2.39 -0.01 2.58 16 42 H 0.09 2.81 6.94 -2.38 -0.02 2.80 16 43 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -81.17 330.66 2.05 -79.12 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.81 Total: 8.47 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.04 Total: 5.79 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -4.91 Total: -116.88 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.62 Total: -33.25 kcal Atomic # 14 Polarization: 55.02 SS G_CDS: 1.72 Total: 56.74 kcal Total: -81.17 2.05 -79.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053163757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.854 kcal (2) G-P(sol) polarization free energy of solvation -81.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds