Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 H 1.09002 * 109.46999 * 54.99826 * 3 2 1 5 5 C 1.53005 * 109.47043 * 295.00261 * 3 2 1 6 6 C 1.50694 * 109.47368 * 175.00353 * 3 2 1 7 7 O 1.21282 * 120.00207 * 15.98031 * 6 3 2 8 8 N 1.34777 * 120.00078 * 195.98550 * 6 3 2 9 9 C 1.47135 * 121.05968 * 174.37287 * 8 6 3 10 10 C 1.53226 * 108.72402 * 232.27504 * 9 8 6 11 11 O 1.43125 * 109.35382 * 305.80291 * 10 9 8 12 12 C 1.42366 * 113.99191 * 59.77988 * 11 10 9 13 13 C 1.52930 * 114.29160 * 74.95884 * 12 11 10 14 14 N 1.47165 * 87.84492 * 88.27647 * 13 12 11 15 15 C 1.36930 * 135.99814 * 206.64613 * 14 13 12 16 16 H 1.08000 * 120.00095 * 8.28608 * 15 14 13 17 17 C 1.38816 * 120.00122 * 188.28858 * 15 14 13 18 18 N 1.31621 * 120.00035 * 195.74434 * 17 15 14 19 19 Si 1.86803 * 120.00008 * 15.73737 * 17 15 14 20 20 H 1.48504 * 109.47125 * 270.00297 * 19 17 15 21 21 H 1.48504 * 109.47047 * 30.00009 * 19 17 15 22 22 H 1.48499 * 109.47306 * 150.00229 * 19 17 15 23 23 C 1.47178 * 88.00620 * 26.89399 * 14 13 12 24 24 C 1.47349 * 121.06161 * 354.35412 * 8 6 3 25 25 H 1.08994 * 109.47666 * 59.99952 * 1 2 3 26 26 H 1.08994 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47099 * 300.00124 * 1 2 3 28 28 H 1.09002 * 109.47099 * 239.99876 * 2 1 3 29 29 H 1.08998 * 109.47617 * 119.99527 * 2 1 3 30 30 H 1.09005 * 109.46728 * 305.42837 * 5 3 2 31 31 H 1.09000 * 109.47224 * 65.42997 * 5 3 2 32 32 H 1.08999 * 109.46817 * 185.43303 * 5 3 2 33 33 H 1.08996 * 109.59159 * 112.50347 * 9 8 6 34 34 H 1.08997 * 109.71886 * 352.11937 * 9 8 6 35 35 H 1.09002 * 109.49116 * 185.83950 * 10 9 8 36 36 H 1.09003 * 109.49252 * 65.76765 * 10 9 8 37 37 H 1.08993 * 113.49427 * 333.52978 * 13 12 11 38 38 H 1.09007 * 113.54295 * 203.02745 * 13 12 11 39 39 H 0.97000 * 120.00137 * 354.91438 * 18 17 15 40 40 H 1.09001 * 113.48745 * 87.84330 * 23 14 13 41 41 H 1.08996 * 113.49489 * 218.35489 * 23 14 13 42 42 H 1.09004 * 109.75046 * 12.12765 * 24 8 6 43 43 H 1.09007 * 109.75021 * 251.41148 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5418 1.4444 0.1237 7 8 4.1688 0.4274 -0.0852 8 7 4.1884 2.5761 0.4667 9 6 5.6388 2.5766 0.7139 10 6 5.9049 3.2189 2.0794 11 8 5.2925 4.5118 2.1228 12 6 3.8822 4.4911 1.9295 13 6 3.0888 3.9920 3.1379 14 7 3.0652 5.3803 3.6258 15 6 2.9720 5.9939 4.8463 16 1 3.0255 5.4070 5.7513 17 6 2.8085 7.3704 4.9205 18 7 3.0264 7.9988 6.0563 19 14 2.2795 8.3310 3.4082 20 1 3.4815 8.7641 2.6513 21 1 1.4347 7.4679 2.5440 22 1 1.5016 9.5246 3.8270 23 6 3.1796 5.8199 2.2258 24 6 3.4653 3.8524 0.6057 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.9882 1.5344 -2.1517 31 1 0.5494 2.2116 -1.3519 32 1 2.0796 3.1210 -1.3498 33 1 6.1419 3.1505 -0.0643 34 1 6.0125 1.5527 0.7125 35 1 6.9796 3.3202 2.2304 36 1 5.4845 2.5908 2.8648 37 1 3.6536 3.3156 3.7793 38 1 2.1026 3.6049 2.8815 39 1 3.2291 7.4934 6.8590 40 1 2.2180 5.9243 1.7233 41 1 3.8213 6.6912 2.0950 42 1 2.3908 3.6688 0.6077 43 1 3.7246 4.5146 -0.2204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053163758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -15.389174 kcal Electronic energy + Delta-G solvation = -23827.926641 eV Core-core repulsion = 20489.592106 eV Total energy + Delta-G solvation = -3338.334534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.82346 -39.28433 -36.64093 -35.55736 -34.73080 -32.48438 -30.77674 -29.70914 -28.10436 -26.18454 -25.63801 -25.33158 -23.52297 -21.83201 -20.88466 -19.40192 -18.90734 -17.58931 -17.29840 -16.64555 -15.92414 -15.74179 -15.18006 -14.85295 -14.67473 -14.40898 -13.90967 -13.82996 -13.60773 -13.42946 -13.16858 -13.05497 -12.69611 -12.36594 -12.09196 -11.91075 -11.78087 -11.75526 -11.37553 -11.13663 -10.96839 -10.87162 -10.80962 -10.64398 -10.31260 -9.88636 -9.65976 -9.41674 -9.20451 -8.79909 -8.43431 -7.22283 -6.32140 -3.23965 2.54674 2.81125 3.38707 3.43955 3.58978 3.81326 4.28277 4.54415 4.55740 4.58434 4.73030 4.79611 4.86273 4.90469 5.08439 5.13770 5.17932 5.27571 5.29074 5.35818 5.42500 5.47387 5.53575 5.62816 5.67079 5.71099 5.77646 5.83413 5.88154 6.01230 6.03607 6.07425 6.15224 6.19357 6.28056 6.33647 6.44604 7.05614 7.27802 7.51370 8.07597 8.22210 8.95223 9.48390 10.32069 11.17794 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.005290 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.688465 B = 5291.342878 C = 5900.742655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.114 4.114 4 H 0.097 0.903 5 C -0.146 4.146 6 C 0.524 3.476 7 O -0.546 6.546 8 N -0.611 5.611 9 C 0.078 3.922 10 C 0.047 3.953 11 O -0.334 6.334 12 C 0.058 3.942 13 C 0.100 3.900 14 N -0.611 5.611 15 C -0.304 4.304 16 H 0.081 0.919 17 C -0.022 4.022 18 N -0.930 5.930 19 Si 1.061 2.939 20 H -0.291 1.291 21 H -0.283 1.283 22 H -0.294 1.294 23 C 0.118 3.882 24 C 0.093 3.907 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 -12.635 -15.637 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 C -0.135 4.135 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.313 3.687 7 O -0.424 6.424 8 N -0.345 5.345 9 C -0.044 4.044 10 C -0.030 4.030 11 O -0.252 6.252 12 C 0.016 3.984 13 C -0.027 4.027 14 N -0.339 5.339 15 C -0.430 4.430 16 H 0.099 0.901 17 C -0.221 4.221 18 N -0.572 5.572 19 Si 0.892 3.108 20 H -0.218 1.218 21 H -0.209 1.209 22 H -0.221 1.221 23 C -0.008 4.008 24 C -0.031 4.031 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.542 -11.360 -16.005 19.687 hybrid contribution 0.140 -1.709 0.702 1.853 sum -1.402 -13.069 -15.303 20.173 Atomic orbital electron populations 1.21836 0.95356 1.01850 1.02080 1.21338 0.95492 0.94021 1.03266 1.21391 0.91741 0.99517 1.00872 0.88478 1.21868 1.02395 1.00534 0.95581 1.20700 0.90177 0.82323 0.75547 1.90658 1.68937 1.32431 1.50326 1.48199 1.08654 1.08814 1.68850 1.22272 0.80860 1.03195 0.98120 1.22933 0.98971 0.85820 0.95321 1.87990 1.18000 1.26694 1.92520 1.23122 0.82928 0.99857 0.92531 1.22853 0.96481 0.90425 0.92897 1.45975 1.86374 1.00876 1.00651 1.20075 1.49072 0.92389 0.81449 0.90126 1.25780 0.99122 0.93277 1.03915 1.70894 1.49087 1.36796 1.00396 0.83792 0.76788 0.75621 0.74596 1.21841 1.20900 1.22125 1.22675 0.96547 0.94494 0.87107 1.22392 0.97824 0.84447 0.98395 0.92395 0.92524 0.92506 0.91151 0.91550 0.91984 0.90991 0.91883 0.90770 0.88384 0.87749 0.92678 0.93449 0.94131 0.92814 0.92082 0.91658 0.88252 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.67 37.15 0.36 -0.88 16 2 C -0.10 -1.04 4.74 -26.73 -0.13 -1.17 16 3 C -0.11 -1.20 1.87 -91.77 -0.17 -1.37 16 4 H 0.10 0.99 7.00 -51.93 -0.36 0.63 16 5 C -0.15 -1.25 8.46 37.16 0.31 -0.93 16 6 C 0.52 7.03 6.92 -10.99 -0.08 6.96 16 7 O -0.55 -8.89 15.59 5.56 0.09 -8.80 16 8 N -0.61 -8.00 3.03 -172.49 -0.52 -8.52 16 9 C 0.08 0.98 6.57 -3.58 -0.02 0.96 16 10 C 0.05 0.66 6.90 37.27 0.26 0.92 16 11 O -0.33 -6.05 10.55 -35.23 -0.37 -6.42 16 12 C 0.06 0.99 1.29 -90.67 -0.12 0.88 16 13 C 0.10 1.95 7.90 -8.19 -0.06 1.88 16 14 N -0.61 -14.89 3.62 -184.54 -0.67 -15.55 16 15 C -0.30 -8.75 11.03 -15.06 -0.17 -8.91 16 16 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 17 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 18 N -0.93 -29.31 13.70 55.49 0.76 -28.55 16 19 Si 1.06 26.00 25.52 -169.99 -4.34 21.66 16 20 H -0.29 -6.89 6.96 56.52 0.39 -6.49 16 21 H -0.28 -6.21 5.70 56.52 0.32 -5.88 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 C 0.12 2.39 5.04 -8.04 -0.04 2.35 16 24 C 0.09 1.20 4.62 -3.69 -0.02 1.18 16 25 H 0.06 0.41 6.69 -51.93 -0.35 0.07 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.51 6.84 -51.93 -0.36 0.15 16 32 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 1.23 7.11 -51.93 -0.37 0.86 16 35 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.05 0.81 7.30 -51.93 -0.38 0.43 16 37 H 0.05 0.95 7.36 -51.93 -0.38 0.57 16 38 H 0.04 0.72 7.93 -51.93 -0.41 0.31 16 39 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 40 H 0.06 1.12 6.95 -51.93 -0.36 0.76 16 41 H 0.07 1.41 6.33 -51.93 -0.33 1.08 16 42 H 0.10 1.10 4.92 -51.93 -0.26 0.85 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -34.13 329.02 -6.99 -41.12 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -6.93 Total: -1.01 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 0.03 Total: 1.13 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: -0.43 Total: -52.62 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.29 Total: -15.23 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.34 Total: 21.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.13 -6.99 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053163758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.728 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds