Wall clock time and date at job start Tue Mar 31 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 H 1.09002 * 109.46999 * 54.99826 * 3 2 1 5 5 C 1.53005 * 109.47043 * 295.00261 * 3 2 1 6 6 C 1.50694 * 109.47368 * 175.00353 * 3 2 1 7 7 O 1.21282 * 120.00207 * 15.98031 * 6 3 2 8 8 N 1.34777 * 120.00078 * 195.98550 * 6 3 2 9 9 C 1.47135 * 121.05968 * 174.37287 * 8 6 3 10 10 C 1.53226 * 108.72402 * 232.27504 * 9 8 6 11 11 O 1.43125 * 109.35382 * 305.80291 * 10 9 8 12 12 C 1.42366 * 113.99191 * 59.77988 * 11 10 9 13 13 C 1.52930 * 114.29160 * 74.95884 * 12 11 10 14 14 N 1.47165 * 87.84492 * 88.27647 * 13 12 11 15 15 C 1.36930 * 135.99814 * 206.64613 * 14 13 12 16 16 H 1.08000 * 120.00095 * 8.28608 * 15 14 13 17 17 C 1.38816 * 120.00122 * 188.28858 * 15 14 13 18 18 N 1.31621 * 120.00035 * 195.74434 * 17 15 14 19 19 Si 1.86803 * 120.00008 * 15.73737 * 17 15 14 20 20 H 1.48504 * 109.47125 * 270.00297 * 19 17 15 21 21 H 1.48504 * 109.47047 * 30.00009 * 19 17 15 22 22 H 1.48499 * 109.47306 * 150.00229 * 19 17 15 23 23 C 1.47178 * 88.00620 * 26.89399 * 14 13 12 24 24 C 1.47349 * 121.06161 * 354.35412 * 8 6 3 25 25 H 1.08994 * 109.47666 * 59.99952 * 1 2 3 26 26 H 1.08994 * 109.46961 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47099 * 300.00124 * 1 2 3 28 28 H 1.09002 * 109.47099 * 239.99876 * 2 1 3 29 29 H 1.08998 * 109.47617 * 119.99527 * 2 1 3 30 30 H 1.09005 * 109.46728 * 305.42837 * 5 3 2 31 31 H 1.09000 * 109.47224 * 65.42997 * 5 3 2 32 32 H 1.08999 * 109.46817 * 185.43303 * 5 3 2 33 33 H 1.08996 * 109.59159 * 112.50347 * 9 8 6 34 34 H 1.08997 * 109.71886 * 352.11937 * 9 8 6 35 35 H 1.09002 * 109.49116 * 185.83950 * 10 9 8 36 36 H 1.09003 * 109.49252 * 65.76765 * 10 9 8 37 37 H 1.08993 * 113.49427 * 333.52978 * 13 12 11 38 38 H 1.09007 * 113.54295 * 203.02745 * 13 12 11 39 39 H 0.97000 * 120.00137 * 354.91438 * 18 17 15 40 40 H 1.09001 * 113.48745 * 87.84330 * 23 14 13 41 41 H 1.08996 * 113.49489 * 218.35489 * 23 14 13 42 42 H 1.09004 * 109.75046 * 12.12765 * 24 8 6 43 43 H 1.09007 * 109.75021 * 251.41148 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5418 1.4444 0.1237 7 8 4.1688 0.4274 -0.0852 8 7 4.1884 2.5761 0.4667 9 6 5.6388 2.5766 0.7139 10 6 5.9049 3.2189 2.0794 11 8 5.2925 4.5118 2.1228 12 6 3.8822 4.4911 1.9295 13 6 3.0888 3.9920 3.1379 14 7 3.0652 5.3803 3.6258 15 6 2.9720 5.9939 4.8463 16 1 3.0255 5.4070 5.7513 17 6 2.8085 7.3704 4.9205 18 7 3.0264 7.9988 6.0563 19 14 2.2795 8.3310 3.4082 20 1 3.4815 8.7641 2.6513 21 1 1.4347 7.4679 2.5440 22 1 1.5016 9.5246 3.8270 23 6 3.1796 5.8199 2.2258 24 6 3.4653 3.8524 0.6057 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.9882 1.5344 -2.1517 31 1 0.5494 2.2116 -1.3519 32 1 2.0796 3.1210 -1.3498 33 1 6.1419 3.1505 -0.0643 34 1 6.0125 1.5527 0.7125 35 1 6.9796 3.3202 2.2304 36 1 5.4845 2.5908 2.8648 37 1 3.6536 3.3156 3.7793 38 1 2.1026 3.6049 2.8815 39 1 3.2291 7.4934 6.8590 40 1 2.2180 5.9243 1.7233 41 1 3.8213 6.6912 2.0950 42 1 2.3908 3.6688 0.6077 43 1 3.7246 4.5146 -0.2204 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053163758.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:08 Heat of formation + Delta-G solvation = -40.260035 kcal Electronic energy + Delta-G solvation = -23829.005122 eV Core-core repulsion = 20489.592106 eV Total energy + Delta-G solvation = -3339.413016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02006 -40.52873 -38.02859 -36.43863 -35.86877 -34.57742 -31.98103 -30.70134 -29.41589 -27.67100 -27.15597 -26.15893 -24.61483 -23.39385 -22.01224 -20.77815 -19.96359 -19.53534 -18.35977 -17.85866 -17.41084 -16.78552 -16.32956 -16.19268 -15.72976 -15.60591 -15.37629 -15.27013 -15.14137 -14.67749 -14.45614 -14.11933 -13.57310 -13.40018 -13.20073 -12.92426 -12.88037 -12.71053 -12.59031 -12.48380 -12.44045 -12.17547 -11.79041 -11.68104 -11.59284 -11.43126 -11.37359 -10.88755 -10.80107 -10.65442 -9.61892 -9.24004 -8.61900 -5.45641 1.42928 1.53679 1.55754 1.70171 1.81726 2.52850 2.59665 2.93900 3.17222 3.30035 3.53151 3.63509 3.79674 3.86160 3.98240 4.11952 4.19091 4.26966 4.38634 4.49211 4.53789 4.56035 4.59453 4.60155 4.61680 4.66752 4.72628 4.76519 4.84550 4.97641 4.97859 5.02272 5.14470 5.19365 5.20456 5.29981 5.38729 5.50681 5.94699 6.23530 6.27129 6.68896 7.06094 7.33649 8.25845 8.89269 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020603 B = 0.005290 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.688465 B = 5291.342878 C = 5900.742655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.102 4.102 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.144 4.144 6 C 0.520 3.480 7 O -0.580 6.580 8 N -0.613 5.613 9 C 0.083 3.917 10 C 0.047 3.953 11 O -0.365 6.365 12 C 0.075 3.925 13 C 0.098 3.902 14 N -0.648 5.648 15 C -0.293 4.293 16 H 0.040 0.960 17 C -0.084 4.084 18 N -0.969 5.969 19 Si 1.101 2.899 20 H -0.279 1.279 21 H -0.236 1.236 22 H -0.303 1.303 23 C 0.111 3.889 24 C 0.102 3.898 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.124 0.876 36 H 0.040 0.960 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.244 0.756 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.124 0.876 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.977 -12.965 -19.274 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.133 4.133 4 H 0.124 0.876 5 C -0.201 4.201 6 C 0.311 3.689 7 O -0.460 6.460 8 N -0.346 5.346 9 C -0.040 4.040 10 C -0.029 4.029 11 O -0.283 6.283 12 C 0.033 3.967 13 C -0.028 4.028 14 N -0.376 5.376 15 C -0.420 4.420 16 H 0.058 0.942 17 C -0.276 4.276 18 N -0.614 5.614 19 Si 0.924 3.076 20 H -0.206 1.206 21 H -0.160 1.160 22 H -0.231 1.231 23 C -0.014 4.014 24 C -0.021 4.021 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.115 0.885 35 H 0.142 0.858 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.142 0.858 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.839 -11.750 -19.679 23.095 hybrid contribution 0.647 -1.770 1.910 2.684 sum -2.191 -13.521 -17.769 22.435 Atomic orbital electron populations 1.21809 0.93537 1.02461 1.02831 1.21314 0.96991 0.93760 1.01955 1.21471 0.89381 0.99996 1.02465 0.87594 1.21892 1.03776 1.00468 0.93946 1.21276 0.91374 0.81657 0.74634 1.90647 1.69902 1.33566 1.51897 1.48277 1.08808 1.08996 1.68510 1.22233 0.81116 1.03147 0.97478 1.23084 0.99766 0.84176 0.95917 1.87943 1.18604 1.28910 1.92878 1.22879 0.82298 0.97773 0.93709 1.23115 0.98172 0.87956 0.93573 1.45972 1.87029 1.03618 1.00973 1.19865 1.47020 0.92466 0.82644 0.94228 1.27261 0.99369 0.94920 1.06004 1.71026 1.52412 1.37038 1.00885 0.83389 0.77433 0.74694 0.72083 1.20566 1.15985 1.23078 1.22990 0.98286 0.95535 0.84606 1.22414 0.99099 0.84289 0.96271 0.90934 0.92135 0.92344 0.92022 0.93425 0.92373 0.88958 0.91062 0.89062 0.88544 0.85788 0.94193 0.95262 0.91039 0.94708 0.88500 0.92965 0.85777 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 71.98 0.70 -1.27 16 2 C -0.10 -1.85 4.74 30.59 0.14 -1.71 16 3 C -0.11 -1.98 1.87 -11.54 -0.02 -2.00 16 4 H 0.11 1.70 7.00 -2.39 -0.02 1.68 16 5 C -0.14 -1.81 8.46 71.98 0.61 -1.20 16 6 C 0.52 12.64 6.92 87.66 0.61 13.24 16 7 O -0.58 -18.13 15.59 -3.03 -0.05 -18.17 16 8 N -0.61 -14.06 3.03 -818.02 -2.48 -16.53 16 9 C 0.08 1.88 6.57 86.33 0.57 2.45 16 10 C 0.05 1.26 6.90 72.06 0.50 1.76 16 11 O -0.36 -12.55 10.55 -148.98 -1.57 -14.12 16 12 C 0.08 2.36 1.29 -10.82 -0.01 2.34 16 13 C 0.10 3.61 7.90 83.33 0.66 4.27 16 14 N -0.65 -30.84 3.62 -738.64 -2.67 -33.51 16 15 C -0.29 -17.24 11.03 84.04 0.93 -16.31 16 16 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 17 C -0.08 -5.04 5.50 84.86 0.47 -4.57 16 18 N -0.97 -63.38 13.70 21.65 0.30 -63.09 16 19 Si 1.10 51.24 25.52 68.60 1.75 52.99 16 20 H -0.28 -12.36 6.96 99.48 0.69 -11.66 16 21 H -0.24 -9.07 5.70 99.48 0.57 -8.51 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 23 C 0.11 4.10 5.04 83.42 0.42 4.52 16 24 C 0.10 2.15 4.62 86.14 0.40 2.55 16 25 H 0.07 0.75 6.69 -2.39 -0.02 0.73 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 1.21 8.08 -2.39 -0.02 1.19 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.09 0.82 6.84 -2.39 -0.02 0.80 16 32 H 0.07 0.80 6.43 -2.39 -0.02 0.78 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 2.26 7.11 -2.39 -0.02 2.24 16 35 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.04 1.17 7.30 -2.39 -0.02 1.15 16 37 H 0.03 1.17 7.36 -2.39 -0.02 1.15 16 38 H 0.07 2.25 7.93 -2.38 -0.02 2.23 16 39 H 0.24 16.15 8.73 -92.71 -0.81 15.34 16 40 H 0.10 2.95 6.95 -2.39 -0.02 2.93 16 41 H 0.05 2.09 6.33 -2.39 -0.02 2.08 16 42 H 0.12 2.02 4.92 -2.38 -0.01 2.01 16 43 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -77.89 329.02 2.03 -75.86 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: 0.80 Total: 12.50 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.96 Total: 4.07 kcal Atomic # 7 Polarization: -108.28 SS G_CDS: -4.85 Total: -113.13 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -1.62 Total: -32.29 kcal Atomic # 14 Polarization: 51.24 SS G_CDS: 1.75 Total: 52.99 kcal Total: -77.89 2.03 -75.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053163758.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.599 kcal (2) G-P(sol) polarization free energy of solvation -77.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds