Wall clock time and date at job start Tue Mar 31 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47187 * 2 1 4 4 H 1.08999 * 109.46592 * 305.64505 * 3 2 1 5 5 O 1.42901 * 109.47009 * 65.64404 * 3 2 1 6 6 C 1.42901 * 113.99911 * 258.85684 * 5 3 2 7 7 C 1.50698 * 109.46938 * 185.64588 * 3 2 1 8 8 O 1.21279 * 119.99607 * 244.99456 * 7 3 2 9 9 N 1.34781 * 120.00039 * 65.00082 * 7 3 2 10 10 C 1.47387 * 135.85231 * 359.62540 * 9 7 3 11 11 C 1.52071 * 87.40901 * 154.38891 * 10 9 7 12 12 C 1.47387 * 135.85187 * 180.02562 * 9 7 3 13 13 C 1.53513 * 117.21407 * 267.28066 * 11 10 9 14 14 C 1.54624 * 102.70309 * 262.92726 * 13 11 10 15 15 N 1.47149 * 107.37951 * 339.38548 * 14 13 11 16 16 C 1.36936 * 125.57883 * 179.03972 * 15 14 13 17 17 H 1.08004 * 119.99768 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00363 * 0.02562 * 16 15 14 19 19 N 1.31614 * 119.99865 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99984 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.46883 * 60.00272 * 20 18 16 22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47118 * 300.00217 * 20 18 16 24 24 C 1.47751 * 108.83605 * 359.08876 * 15 14 13 25 25 H 1.08996 * 109.46968 * 295.81626 * 1 2 3 26 26 H 1.09001 * 109.47292 * 175.80941 * 1 2 3 27 27 H 1.09001 * 109.46953 * 55.81453 * 1 2 3 28 28 H 1.09004 * 109.46900 * 119.99433 * 2 1 3 29 29 H 1.08994 * 109.47358 * 240.00045 * 2 1 3 30 30 H 1.08998 * 109.47263 * 54.75696 * 6 5 3 31 31 H 1.09000 * 109.47096 * 174.76515 * 6 5 3 32 32 H 1.09004 * 109.47286 * 294.76308 * 6 5 3 33 33 H 1.08995 * 113.54405 * 268.99933 * 10 9 7 34 34 H 1.09007 * 113.54413 * 39.68361 * 10 9 7 35 35 H 1.08998 * 113.54568 * 320.32208 * 12 9 7 36 36 H 1.09002 * 113.54490 * 90.93091 * 12 9 7 37 37 H 1.09001 * 110.76482 * 21.23153 * 13 11 10 38 38 H 1.09004 * 110.76634 * 144.62540 * 13 11 10 39 39 H 1.09008 * 109.86497 * 98.83633 * 14 13 11 40 40 H 1.09004 * 109.86756 * 219.93392 * 14 13 11 41 41 H 0.97008 * 120.00131 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.40403 * 263.49920 * 24 15 14 43 43 H 1.08998 * 110.40350 * 141.08288 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5965 1.9847 -0.8351 5 8 1.6750 2.0768 1.2274 6 6 0.5383 2.9365 1.1217 7 6 3.5405 1.4448 -0.1398 8 8 4.2332 1.8582 0.7658 9 7 4.1126 0.9875 -1.2712 10 6 3.6331 0.4196 -2.5440 11 6 4.9208 0.9256 -3.1752 12 6 5.4903 0.8311 -1.7712 13 6 4.8861 2.3176 -3.8214 14 6 4.6596 1.9931 -5.3162 15 7 5.0713 0.5966 -5.5300 16 6 5.0084 -0.0794 -6.7193 17 1 5.3357 -1.1071 -6.7741 18 6 4.5240 0.5563 -7.8542 19 7 4.1256 1.8089 -7.7874 20 14 4.4389 -0.3657 -9.4766 21 1 3.5582 -1.5518 -9.3262 22 1 3.8896 0.5295 -10.5264 23 1 5.8018 -0.8075 -9.8669 24 6 5.5625 0.0429 -4.2513 25 1 -0.3633 0.4475 0.9251 26 1 -0.3634 -1.0249 -0.0751 27 1 -0.3633 0.5774 -0.8501 28 1 1.8933 -0.5138 0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 -0.2997 2.3808 0.7010 31 1 0.2692 3.3061 2.1112 32 1 0.7786 3.7784 0.4724 33 1 3.5516 -0.6672 -2.5325 34 1 2.7372 0.9072 -2.9282 35 1 6.1453 1.6622 -1.5101 36 1 5.9289 -0.1402 -1.5425 37 1 4.0599 2.9074 -3.4245 38 1 5.8352 2.8342 -3.6777 39 1 3.6048 2.1105 -5.5650 40 1 5.2640 2.6563 -5.9350 41 1 3.7874 2.2533 -8.5806 42 1 6.6492 0.1108 -4.2002 43 1 5.2398 -0.9918 -4.1363 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072533790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:09 Heat of formation + Delta-G solvation = -14.171708 kcal Electronic energy + Delta-G solvation = -23156.498159 eV Core-core repulsion = 19818.216418 eV Total energy + Delta-G solvation = -3338.281741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.78216 -39.08644 -37.34426 -35.67310 -33.57417 -32.18969 -29.84975 -28.97899 -28.09483 -26.28025 -25.98843 -25.05824 -23.62658 -22.11089 -20.34730 -19.46737 -18.39090 -17.34556 -16.88640 -16.71425 -15.96484 -15.55341 -15.21560 -14.88323 -14.52971 -14.30311 -13.83312 -13.62822 -13.58920 -13.14513 -12.75999 -12.49423 -12.31345 -12.12401 -11.98168 -11.88506 -11.81751 -11.55666 -11.04226 -11.00546 -10.92857 -10.69975 -10.44753 -10.25345 -10.16774 -10.02305 -9.84503 -9.68523 -9.30007 -8.63609 -8.56375 -6.88153 -5.75202 -3.09034 2.59703 2.73881 3.37817 3.42573 3.43600 3.72490 4.34213 4.45396 4.61425 4.64709 4.71520 4.92829 5.04569 5.07498 5.18162 5.22454 5.26762 5.45198 5.46093 5.50519 5.51414 5.62789 5.63934 5.73090 5.76842 5.79151 5.81616 5.87455 5.99718 6.13670 6.19768 6.42314 6.47887 6.62554 6.67451 6.89388 7.51147 7.57048 7.77803 7.81721 8.20628 8.24606 9.17501 9.77613 10.43101 11.36304 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.003986 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.412197 B = 7022.654737 C = 7422.302128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C 0.079 3.921 4 H 0.087 0.913 5 O -0.359 6.359 6 C 0.024 3.976 7 C 0.537 3.463 8 O -0.530 6.530 9 N -0.642 5.642 10 C 0.118 3.882 11 C -0.105 4.105 12 C 0.121 3.879 13 C -0.117 4.117 14 C 0.180 3.820 15 N -0.605 5.605 16 C -0.230 4.230 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.154 3.846 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.253 0.747 42 H 0.027 0.973 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.441 -1.492 13.518 15.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.174 4.174 3 C 0.018 3.982 4 H 0.105 0.895 5 O -0.276 6.276 6 C -0.072 4.072 7 C 0.326 3.674 8 O -0.406 6.406 9 N -0.379 5.379 10 C -0.004 4.004 11 C -0.107 4.107 12 C -0.002 4.002 13 C -0.155 4.155 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.027 3.973 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.162 -1.144 14.168 15.492 hybrid contribution -0.284 -0.376 -1.167 1.259 sum -6.446 -1.521 13.001 14.591 Atomic orbital electron populations 1.21831 0.94767 1.02395 1.02004 1.21931 0.97080 0.94743 1.03681 1.21923 0.92025 0.95393 0.88878 0.89482 1.88008 1.48014 1.62001 1.29621 1.23001 0.88082 0.93202 1.02962 1.20062 0.89647 0.77674 0.80044 1.90696 1.64467 1.47001 1.38468 1.49816 1.10591 1.62032 1.15495 1.22925 0.98887 0.98858 0.79728 1.22190 0.95758 0.99369 0.93364 1.22779 0.84957 1.01903 0.90548 1.22468 1.00930 0.93253 0.98877 1.21223 0.99622 0.85698 0.87946 1.44534 1.74696 1.09675 1.04231 1.19004 1.36554 0.95268 0.84970 0.90433 1.24785 1.01212 0.96331 0.97949 1.69947 1.48390 1.10380 1.28242 0.86210 0.77758 0.78531 0.83313 1.21169 1.21627 1.21172 1.21138 0.95939 0.94918 0.85321 0.92134 0.91980 0.92483 0.90543 0.90180 0.93364 0.89318 0.93859 0.89400 0.90170 0.90434 0.89727 0.92184 0.91748 0.93543 0.93796 0.93690 0.95534 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.79 37.16 0.33 -0.97 16 2 C -0.14 -1.44 5.59 -26.73 -0.15 -1.59 16 3 C 0.08 1.01 2.51 -27.88 -0.07 0.94 16 4 H 0.09 0.99 7.70 -51.93 -0.40 0.59 16 5 O -0.36 -4.88 9.67 -55.09 -0.53 -5.42 16 6 C 0.02 0.23 10.37 101.05 1.05 1.27 16 7 C 0.54 8.58 7.43 -10.98 -0.08 8.50 16 8 O -0.53 -10.58 17.28 -14.30 -0.25 -10.83 16 9 N -0.64 -9.34 3.65 -185.73 -0.68 -10.02 16 10 C 0.12 1.63 6.43 -7.33 -0.05 1.58 16 11 C -0.11 -1.65 1.06 -155.21 -0.16 -1.82 16 12 C 0.12 1.70 8.03 -7.47 -0.06 1.64 16 13 C -0.12 -2.06 6.41 -25.61 -0.16 -2.23 16 14 C 0.18 4.11 5.39 -2.83 -0.02 4.09 16 15 N -0.60 -14.43 3.41 -170.54 -0.58 -15.01 16 16 C -0.23 -6.09 10.28 -15.06 -0.15 -6.24 16 17 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -26.15 10.30 55.49 0.57 -25.58 16 20 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.15 2.85 6.70 -3.22 -0.02 2.83 16 25 H 0.06 0.50 6.64 -51.93 -0.35 0.16 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.81 6.66 -51.93 -0.35 0.46 16 30 H 0.05 0.37 6.02 -51.93 -0.31 0.06 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 1.08 8.01 -51.93 -0.42 0.67 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 38 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 1.17 7.38 -51.92 -0.38 0.79 16 40 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -32.20 343.19 -8.17 -40.37 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.20 Total: -2.75 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 0.35 Total: 7.74 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.69 Total: -50.61 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.78 Total: -16.25 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.20 -8.17 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072533790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.195 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds